{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T23:52:28Z","timestamp":1793145148222,"version":"4.5.0"},"reference-count":53,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy"],"published-print":{"date-parts":[[2021,6]]},"DOI":"10.1016\/j.saa.2021.119647","type":"journal-article","created":{"date-parts":[[2021,3,11]],"date-time":"2021-03-11T01:15:03Z","timestamp":1615425303000},"page":"119647","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":21,"special_numbering":"C","title":["Rapid classification of chromoblastomycosis agents genera by infrared spectroscopy and chemometrics supervised by sequencing of rDNA regions"],"prefix":"10.1016","volume":"254","author":[{"given":"Daiane","family":"Heidrich","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alessandra","family":"Koehler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mauricio","family":"Ram\u00edrez-Castrill\u00f3n","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danielle Machado","family":"Pagani","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marco Flores","family":"Ferr\u00e3o","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maria L\u00facia","family":"Scroferneker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Valeriano Antonio","family":"Corbellini","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.saa.2021.119647_b0005","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1128\/CMR.00032-16","article-title":"Chromoblastomycosis","volume":"30","author":"Queiroz-Telles","year":"2017","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.saa.2021.119647_b0010","doi-asserted-by":"crossref","first-page":"e41512","DOI":"10.1371\/journal.pone.0041512","article-title":"Molecular characterization of pathogenic members of the genus Fonsecaea using multilocus analysis","volume":"7","author":"Sun","year":"2012","journal-title":"PLoS ONE"},{"key":"10.1016\/j.saa.2021.119647_b0015","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1080\/13693780802527178","article-title":"Genetic diversity and species delimitation in the opportunistic genus Fonsecaea","volume":"47","author":"Najafzadeh","year":"2009","journal-title":"Med. Mycol."},{"key":"10.1016\/j.saa.2021.119647_b0020","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.trac.2013.12.009","article-title":"Recent developments and applications of metabolomics in microbiological investigations","volume":"56","author":"Xu","year":"2014","journal-title":"TrAC, Trends Anal. Chem."},{"key":"10.1016\/j.saa.2021.119647_b0025","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1038\/nrm.2016.25","article-title":"Metabolomics: beyond biomarkers and towards mechanisms","volume":"17","author":"Johnson","year":"2016","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.saa.2021.119647_b0030","doi-asserted-by":"crossref","first-page":"766","DOI":"10.1039\/C4AY01712A","article-title":"Assessing the discrimination potential of linear and non-linear supervised chemometric methods on a filamentous fungi FTIR spectral database","volume":"7","author":"Gaydou","year":"2015","journal-title":"Anal. Methods"},{"key":"10.1016\/j.saa.2021.119647_b0035","first-page":"80","article-title":"Rapid identification of 6328 isolates of pathogenic yeasts using MALDI-ToF MS and a simplified, rapid extraction procedure that is compatible with the Bruker Biotyper platform and database","volume":"54","author":"Fraser","year":"2016","journal-title":"Med. Mycol."},{"key":"10.1016\/j.saa.2021.119647_b0040","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/j.ijvsm.2013.03.001","article-title":"Use of Fourier transform infrared spectroscopy (FTIR) spectroscopy for rapid and accurate identification of yeasts isolates from human and animals","volume":"1","author":"Taha","year":"2013","journal-title":"Int. J. Vet. Sci. Med."},{"key":"10.1016\/j.saa.2021.119647_b0045","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1016\/j.saa.2015.07.061","article-title":"Characterization of Paracaccidioides brasiliensis by FT-IR spectroscopy and nanotechnology","volume":"152","author":"Ferreira","year":"2016","journal-title":"Spectrochim. Acta A Mol. Biomol. Spectrosc."},{"key":"10.1016\/j.saa.2021.119647_b0050","doi-asserted-by":"crossref","first-page":"826","DOI":"10.1093\/mmy\/myu064","article-title":"Identification of filamentous fungi isolates by MALDI-TOF mass spectrometry: clinical evaluation of an extended reference spectra library","volume":"52","author":"Becker","year":"2014","journal-title":"Med. Mycol."},{"key":"10.1016\/j.saa.2021.119647_b0055","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1016\/j.resmic.2009.12.007","article-title":"Fourier transform infrared as a powerful technique for the identification and characterization of filamentous fungi and yeast","volume":"161","author":"Santos","year":"2010","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0060","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1016\/j.jpba.2004.08.010","article-title":"FTIR microscopy as a method for identification of bacterial and fungal infections","volume":"37","author":"Erukhimovitch","year":"2005","journal-title":"J. Pharm. Biomed. Anal."},{"key":"10.1016\/j.saa.2021.119647_b0065","doi-asserted-by":"crossref","first-page":"1162","DOI":"10.1128\/JCM.02459-16","article-title":"Rapid identification of clinically relevant members of the genus Exophiala by MALDI-ToF mass spectrometry and description of two novel species: Exophiala campbellii and Exophiala lavatrina","volume":"55","author":"Borman","year":"2017","journal-title":"J. Clin. Microbiol."},{"issue":"2","key":"10.1016\/j.saa.2021.119647_b0070","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1007\/s00248-015-0670-z","article-title":"ATR-FTIR spectroscopy highlights the problem of distinguishing between Exophiala dermaitidis and E. phaeomuriformis using MALDI-TOF MS","volume":"71","author":"Ergin","year":"2016","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.saa.2021.119647_b0075","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1016\/j.mimet.2013.03.011","article-title":"Fourier transform infrared spectral evaluation for the differentiation of clinically relevant Trichophyton species","volume":"93","author":"Ergin","year":"2013","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.saa.2021.119647_b0080","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1039\/c0an00801j","article-title":"Distinction of Fusarium oxysporum fungal isolates (strains) using FTIR-ATR spectroscopy and advanced statistical methods","volume":"136","author":"Salman","year":"2011","journal-title":"Analyst"},{"key":"10.1016\/j.saa.2021.119647_b0085","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1002\/jbio.201000014","article-title":"A high-throughput microcultivation protocol for FTIR spectroscopic characterization and identification of fungi","volume":"3","author":"Shapaval","year":"2010","journal-title":"J. Biophot."},{"key":"10.1016\/j.saa.2021.119647_b0090","doi-asserted-by":"crossref","first-page":"1729","DOI":"10.1007\/s00216-006-1005-1","article-title":"FTIR spectroscopy in medical mycology: applications to the differentiation and typing of Candida","volume":"387","author":"Toubas","year":"2007","journal-title":"Anal. Bioanal. Chem."},{"key":"10.1016\/j.saa.2021.119647_b0095","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/j.mimet.2005.04.005","article-title":"FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi","volume":"64","author":"Fischer","year":"2006","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.saa.2021.119647_b0100","doi-asserted-by":"crossref","first-page":"1100","DOI":"10.1016\/j.funbio.2015.08.007","article-title":"Comparison of methodologies for separation of fungal isolates using Fourier transform infrared (FTIR) spectroscopy and Fourier transform infraredattenuated total reflectance (FTIR-ATR) microspectroscopy","volume":"119","author":"Oberle","year":"2015","journal-title":"Fungal Biol."},{"key":"10.1016\/j.saa.2021.119647_b0105","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0169-7439(95)00006-2","article-title":"Robust methods for multivariate analysis","volume":"32","author":"Liang","year":"1996","journal-title":"Chemom. Intell. Lab. Syst."},{"key":"10.1016\/j.saa.2021.119647_b0110","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/j.mimet.2017.08.013","article-title":"Differentiation of Candida albicans, Candida glabrata, and Candida krusei by FT -IR and chemometrics by CHROMagar\u2122 Candida","volume":"141","author":"Wohlmeister","year":"2017","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.saa.2021.119647_b0115","doi-asserted-by":"crossref","first-page":"788","DOI":"10.1111\/jam.12092","article-title":"Characterization of food spoilage fungi by FTIR spectroscopy","volume":"114","author":"Shapaval","year":"2013","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0120","doi-asserted-by":"crossref","first-page":"1215","DOI":"10.1039\/b821286d","article-title":"A novel procedure for strain classification of fungal mycelium by cluster and artificial neural network analysis of Fourier transform infrared (FTIR) spectra","volume":"134","author":"Naumman","year":"2009","journal-title":"Analyst"},{"key":"10.1016\/j.saa.2021.119647_b0125","doi-asserted-by":"crossref","first-page":"364","DOI":"10.1111\/j.1439-0434.2007.01245.x","article-title":"FT-IR spectroscopy and artificial neural network identification of Fusarium species","volume":"155","author":"Nie","year":"2007","journal-title":"J. Phytopathol."},{"key":"10.1016\/j.saa.2021.119647_b0130","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1016\/j.ijfoodmicro.2013.10.011","article-title":"Differentiation and identification of filamentous fungi by high-throughput FTIR spectroscopic analysis of mycelia","volume":"168\u2013169","author":"Lecellier","year":"2014","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0135","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.1186\/s12866-017-1108-1","article-title":"1H NMR spectroscopy-based metabolomics analysis for the diagnosis of symptomatic E. coli-associated urinary tract infection (UTI)","volume":"17","author":"Lussu","year":"2017","journal-title":"BMC Microbiol."},{"issue":"1","key":"10.1016\/j.saa.2021.119647_b0140","doi-asserted-by":"crossref","first-page":"5","DOI":"10.4014\/jmb.1008.08018","article-title":"Chemotaxonomy of Trichoderma spp. using spectrometry-based metabolite profiling","volume":"21","author":"Kang","year":"2011","journal-title":"J. Microbiol. Biotechnol."},{"key":"10.1016\/j.saa.2021.119647_b0145","first-page":"378","article-title":"Multivariate analysis of Raman spectra applied to microbiology: Discrimination of microorganisms at the species level","volume":"56","author":"Mobili","year":"2010","journal-title":"Rev. Mexic. F\u00eds."},{"key":"10.1016\/j.saa.2021.119647_b0150","first-page":"1288","article-title":"Fast differentiation of bacteria causing pharyngitis by low resolution Raman Spectroscopy and PLS-Discriminant Analysis","volume":"28","author":"Mello","year":"2008","journal-title":"J. Braz. Chem. Soc."},{"key":"10.1016\/j.saa.2021.119647_b0155","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1080\/13693780802566333","article-title":"In vitro activity of antifungal drugs against Cladophialophora species associated with human chromoblastomycosis","volume":"47","author":"Vitale","year":"2009","journal-title":"Med. Mycol."},{"key":"10.1016\/j.saa.2021.119647_b0160","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1007\/s11046-013-9660-1","article-title":"A case of relapsed chromoblastomycosis due to Fonsecaea monophora: antifungal susceptibility and phylogenetic analysis","volume":"176","author":"Daboit","year":"2013","journal-title":"Mycopathologia"},{"key":"10.1016\/j.saa.2021.119647_b0165","doi-asserted-by":"crossref","first-page":"490","DOI":"10.1016\/j.saa.2013.11.053","article-title":"Identifications of household\u2019s spores using mid infrared spectroscopy","volume":"123","author":"Dixit","year":"2014","journal-title":"Spectrochim. Acta A Mol. Biomol. Spectrosc."},{"key":"10.1016\/j.saa.2021.119647_b0170","unstructured":"ASTM E1655-05. Standard practices for infrared, multivariate, quantitative analysis. Pennsylvania: ASTM, 2012."},{"key":"10.1016\/j.saa.2021.119647_b0175","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1016\/j.ipm.2009.03.002","article-title":"A systematic analysis of performance measures for classification tasks","volume":"45","author":"Sokolova","year":"2009","journal-title":"Inf. Process Manag."},{"key":"10.1016\/j.saa.2021.119647_b0180","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.mmcr.2012.08.006","article-title":"A case of Exophiala spinifera infection in Southern Brazil: Molecular identification and antifungal susceptibility","volume":"1","author":"Daboit","year":"2012","journal-title":"Med. Mycol. Case Rep."},{"key":"10.1016\/j.saa.2021.119647_b0185","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/j.mmcr.2017.04.002","article-title":"Chromoblastomycosis caused by Rhinocladiella similis: case report","volume":"16","author":"Heidrich","year":"2017","journal-title":"Med. Mycol. Case Rep."},{"key":"10.1016\/j.saa.2021.119647_b0190","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0005102","article-title":"Molecular epidemiology of agents of human chromoblastomycosis in Brazil with the description of two novel species","volume":"10","author":"Gomes","year":"2016","journal-title":"PLoS. Negl. Trop. Dis."},{"key":"10.1016\/j.saa.2021.119647_b0195","article-title":"Application of ATR-FTIR Spectroscopy to compare the cell materials of wood decay fungi with wood mould fungi","volume":"2015","author":"Gupta","year":"2015","journal-title":"Int J Spec"},{"key":"10.1016\/j.saa.2021.119647_b0200","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1186\/s13068-019-1481-0","article-title":"Biochemical profiling, prediction of total lipid content and fatty acid profile in oleaginous yeasts by FTIR spectroscopy","volume":"12","author":"Shapaval","year":"2019","journal-title":"Biotechnol. Biofuels"},{"key":"10.1016\/j.saa.2021.119647_b0205","first-page":"9","article-title":"Production and characterization of melanin pigment from halophilic black yeast Hortaea werneckii","volume":"2","author":"Rani","year":"2013","journal-title":"Int. J. Pharm. Res. Rev."},{"key":"10.1016\/j.saa.2021.119647_b0210","first-page":"239","article-title":"Rapid identification of Candida species by FT-IR microspectroscopy","volume":"1724","author":"Essendoubi","year":"2005","journal-title":"BBA"},{"key":"10.1016\/j.saa.2021.119647_b0215","doi-asserted-by":"crossref","first-page":"954","DOI":"10.1128\/JCM.41.3.954-959.2003","article-title":"Use of Fourier-transform infrared spectroscopy for typing of Candida albicans strains isolated in intensive care units","volume":"41","author":"Sandt","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0220","doi-asserted-by":"crossref","first-page":"1599","DOI":"10.1128\/JCM.38.4.1599-1608.2000","article-title":"Evaluation of phenotypic markers for selection and identification of Candida dubliensis","volume":"38","author":"Tintelnot","year":"2000","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0225","doi-asserted-by":"crossref","first-page":"525","DOI":"10.1046\/j.1439-0507.1999.00513.x","article-title":"Identification of dermatophytes by Fourier transform infrared spectroscopy (FT-IR)","volume":"42","author":"Bastert","year":"1999","journal-title":"Mycoses"},{"key":"10.1016\/j.saa.2021.119647_b0230","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1111\/j.1439-0507.1998.tb00587.x","article-title":"Differentiation and characterization of yeasts pathogenic for humans (Candida albicans, Exophiala dermatitidis) and algae pathogenic for animals (Prototheca spp.) using Fourier transform infrared spectroscopy (FTIR) in comparison with conventional methods","volume":"41","author":"Schmalreck","year":"1998","journal-title":"Mycoses"},{"key":"10.1016\/j.saa.2021.119647_b0235","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1080\/13693780802566325","article-title":"Lipolytic activity of chromoblastomycosis agents measured by infrared spectroscopy and chemometric methods","volume":"47","author":"Corbellini","year":"2009","journal-title":"Med. Mycol."},{"key":"10.1016\/j.saa.2021.119647_b0240","doi-asserted-by":"crossref","first-page":"7111","DOI":"10.1007\/s00253-013-5087-3","article-title":"Identification of microorganisms by FTIR spectroscopy: perspectives and limitations of the method","volume":"97","author":"Wenning","year":"2013","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.saa.2021.119647_b0245","series-title":"Encyclopedia of Analytical Chemistry","first-page":"102","article-title":"Infrared spectroscopy in microbiology","author":"Naumann","year":"2000"},{"key":"10.1016\/j.saa.2021.119647_b0250","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1016\/j.fm.2014.01.002","article-title":"Implementation of an FTIR spectral library of 486 filamentous fungi strains for rapid identification of molds","volume":"45","author":"Lecellier","year":"2015","journal-title":"Food Microbiol."},{"key":"10.1016\/j.saa.2021.119647_b0255","first-page":"262","article-title":"FTIR spectroscopy for detection and identification of fungal phytopathogenes","volume":"24","author":"Salman","year":"2010","journal-title":"Spectroscopy"},{"key":"10.1016\/j.saa.2021.119647_b0260","doi-asserted-by":"crossref","first-page":"3202","DOI":"10.1039\/c2an16300d","article-title":"Extracting biological information with computational analysis of Fourier-transform infrared (FTIR) biospectroscopy datasets: current practices to future perspectives","volume":"137","author":"Trevisan","year":"2012","journal-title":"Analyst"},{"key":"10.1016\/j.saa.2021.119647_b0265","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1016\/j.jbi.2014.12.001","article-title":"Comparative analysis of targeted metabolomics: Dominance-based rough set approach versus orthogonal partial least square-discriminant analysis","volume":"53","author":"Blasco","year":"2015","journal-title":"J. Biomed. Inf."}],"container-title":["Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1386142521002237?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1386142521002237?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,25]],"date-time":"2025-10-25T01:43:25Z","timestamp":1761356605000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1386142521002237"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6]]},"references-count":53,"alternative-id":["S1386142521002237"],"URL":"https:\/\/doi.org\/10.1016\/j.saa.2021.119647","relation":{},"ISSN":["1386-1425"],"issn-type":[{"value":"1386-1425","type":"print"}],"subject":[],"published":{"date-parts":[[2021,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Rapid classification of chromoblastomycosis agents genera by infrared spectroscopy and chemometrics supervised by sequencing of rDNA regions","name":"articletitle","label":"Article Title"},{"value":"Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.saa.2021.119647","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2021 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"119647"}}