{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,3]],"date-time":"2026-06-03T02:57:45Z","timestamp":1780455465257,"version":"3.54.1"},"reference-count":51,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2019,2,1]],"date-time":"2019-02-01T00:00:00Z","timestamp":1548979200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2019,2,1]],"date-time":"2019-02-01T00:00:00Z","timestamp":1548979200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"name":"Department of Science and Technology-SERB-N-PDF","award":["PDF\/2015\/000473\/LS"],"award-info":[{"award-number":["PDF\/2015\/000473\/LS"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Science of The Total Environment"],"published-print":{"date-parts":[[2019,2]]},"DOI":"10.1016\/j.scitotenv.2018.09.078","type":"journal-article","created":{"date-parts":[[2018,9,7]],"date-time":"2018-09-07T03:36:15Z","timestamp":1536291375000},"page":"858-867","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":38,"special_numbering":"P1","title":["Convergent evolution in bacteria from multiple origins under antibiotic and heavy metal stress, and endophytic conditions of host plant"],"prefix":"10.1016","volume":"650","author":[{"given":"Ruma","family":"Karmakar","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shefali","family":"Bindiya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"P.","family":"Hariprasad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.scitotenv.2018.09.078_bb0005","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1016\/j.ijantimicag.2007.03.012","article-title":"Antibiotic and heavy metal resistance in motile aeromonads and pseudomonads from rainbow trout (Oncorhynchus mykiss) farms in Australia","volume":"30","author":"Akinbowale","year":"2007","journal-title":"Int. J. Antimicrob. Agents"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0010","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0015","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1111\/j.1574-6968.2010.02140.x","article-title":"Persistence and spread of Salmonella enterica serovar Weltevreden in soil and on spinach plants","volume":"314","author":"Arthurson","year":"2011","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0020","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1016\/j.plantsci.2014.11.006","article-title":"Improvement of growth, fruit weight and early blight disease protection of tomato plants by rhizosphere bacteria is correlated with their beneficial traits and induced biosynthesis of antioxidant peroxidase and polyphenol oxidase","volume":"231","author":"Babu","year":"2015","journal-title":"Plant Sci."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0025","doi-asserted-by":"crossref","first-page":"1126","DOI":"10.1111\/1574-6976.12077","article-title":"SOS, the formidable strategy of bacteria against aggressions","volume":"38","author":"Baharoglu","year":"2014","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0030","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1016\/j.tim.2006.02.006","article-title":"Co-selection of antibiotic and metal resistance","volume":"1","author":"Baker-Austin","year":"2006","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0035","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1016\/S0168-6445(03)00046-9","article-title":"Bacterial mercury resistance from atoms to ecosystems","volume":"27","author":"Barkay","year":"2003","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0040","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1016\/S0162-0134(99)00234-2","article-title":"Bacterial metal-resistance proteins and their use in biosensors for the detection of bioavailable heavy metals","volume":"79","author":"Bontidean","year":"2000","journal-title":"J. Inorg. Biochem."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0045","first-page":"315","article-title":"Delivery methods for introducing endophytic bacteria into maize","volume":"49","author":"Bressan","year":"2004","journal-title":"Biol. Control"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0050","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.1128\/aem.47.6.1238-1242.1984","article-title":"Association of metal tolerance with multiple antibiotics resistance of bacteria isolated from drinking water","volume":"47","author":"Calomiris","year":"1984","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0055","series-title":"Microbiology a Laboratory Manual","author":"Cappuccino","year":"2013"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0060","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1155\/2014\/752708","article-title":"Heavy metal polluted soils: effect on plants and bioremediation methods","author":"Chibuike","year":"2014","journal-title":"Appl. Environ. Soil Sci."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0065","series-title":"Performance Standards for Antimicrobial Susceptibility Testing. CLSI Approved Standard M100-S17","author":"Clinical and Laboratory Standards Institute (CLSI)","year":"2007"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0070","article-title":"Performance Standards for Antimicrobial Susceptibility Testing","author":"Clinical and Laboratory Standards Institute (CLSI)","year":"2017"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0075","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1099\/jmm.0.000229","article-title":"Multiple antibiotic resistance index, fitness and virulence potential in respiratory Pseudomonas aeruginosa from Jamaica","volume":"65","author":"Davis","year":"2016","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0080","doi-asserted-by":"crossref","first-page":"8860","DOI":"10.1073\/pnas.88.19.8860","article-title":"An unusual mechanism for resistance to the antibiotic coumermycin-A1","volume":"88","author":"del Castillo","year":"1991","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0085","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1002\/jobm.201100063","article-title":"Interaction of endophytic microbes with legumes","volume":"52","author":"Dudeja","year":"2012","journal-title":"J. Basic Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0090","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1080\/10409230701648494","article-title":"Stress-induced mutagenesis in bacteria","volume":"42","author":"Foster","year":"2007","journal-title":"Crit. Rev. Biochem. Mol. Biol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0095","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.biocontrol.2014.01.012","article-title":"Diversity of cultivable rhizobacteria across tomato growing regions of Karnataka","volume":"72","author":"Hariprasad","year":"2014","journal-title":"Biol. Control"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0100","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fmicb.2014.00191","article-title":"Colonization of plants by human pathogenic bacteria in the course of organic vegetable production","volume":"5","author":"Hofmann","year":"2014","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0105","series-title":"Bergey's Manual of Determinative Bacteriology","author":"Holt","year":"1994"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0110","first-page":"1","article-title":"Proceedings of the international seed testing association. International rules of seed testing","volume":"15A","author":"International Seed Testing Association (ISTA)","year":"2007","journal-title":"Seed Sci. Technol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0115","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1016\/j.watres.2003.10.042","article-title":"Metal fractionation study on bed sediments of river Yamuna, India","volume":"38","author":"Jain","year":"2004","journal-title":"Water Res."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb1000","doi-asserted-by":"crossref","first-page":"4615","DOI":"10.1128\/AEM.66.11.4615-4619.2000","article-title":"Natural antibiotic resistance of bacteria isolated from larvae of the oil fly, Helaeomyia petrolei","volume":"66","author":"Kadavy","year":"2000","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0120","doi-asserted-by":"crossref","first-page":"77","DOI":"10.3390\/microorganisms5040077","article-title":"Bacterial endophyte colonization and distribution within plants","volume":"5","author":"Kandel","year":"2017","journal-title":"Microorganisms"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0125","doi-asserted-by":"crossref","first-page":"5384","DOI":"10.1128\/JB.186.16.5384-5391.2004","article-title":"Indole\u20113\u2011acetic acid biosynthesis in deficient in Gluconacetobacter diazotrophicus strain with mutations in cytochrome C biogenesis genes","volume":"186","author":"Lee","year":"2009","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0130","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1046\/j.1365-2672.92.5s1.4.x","article-title":"Active efflux, a common mechanism for biocide and antibiotic resistance","volume":"92","author":"Levy","year":"2002","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0135","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1111\/j.1472-765X.2011.03088.x","article-title":"A colorimetric assay of 1\u2011aminocyclopropane\u20111\u2011carboxylate (ACC) based on ninhydrin reaction for rapid screening of bacteria containing ACC deaminase","volume":"53","author":"Li","year":"2011","journal-title":"Lett. Appl. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0140","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1111\/j.1469-8137.1991.tb00968.x","article-title":"Detection of extracellular cellulolytic and proteolytic activity in ectomycorrhizal fungi and Heterobasidion annosum (Fr.) Bref","volume":"117","author":"Maijala","year":"1991","journal-title":"New Phytol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0145","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s10661-010-1690-2","article-title":"Incidence of metal and antibiotic resistance in Pseudomonas spp. from the river water, agricultural soil irrigated with wastewater and groundwater","volume":"178","author":"Malik","year":"2011","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0150","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1016\/0092-8674(95)90501-4","article-title":"Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species","volume":"80","author":"Matic","year":"1995","journal-title":"Cell"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0155","doi-asserted-by":"crossref","first-page":"1450","DOI":"10.3389\/fmicb.2015.01450","article-title":"Endophytic cultivable bacteria of the metal bioaccumulator Spartina maritima improve plant growth but not metal uptake in polluted marshes soils","volume":"6","author":"Mesa","year":"2015","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0160","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.0030255","article-title":"After 30\u202fyears of study, the bacterial SOS response still surprises us","volume":"3","author":"Michel","year":"2005","journal-title":"PLoS Biol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0165","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1111\/j.1574-6941.1996.tb00314.x","article-title":"Survival of potentially pathogenic human-associated bacteria in the rhizosphere of hydroponically grown wheat","volume":"20","author":"Morales","year":"1996","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0170","doi-asserted-by":"crossref","first-page":"745","DOI":"10.1289\/ehp.02110s5745","article-title":"Arsenate reductases in prokaryotes and eukaryotes","volume":"110","author":"Mukhopadhyay","year":"2002","journal-title":"Environ. Health Perspect."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0175","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1128\/microbiolspec.VMBF-0016-2015","article-title":"Mechanisms of antibiotic resistance","volume":"4","author":"Munita","year":"2016","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0180","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1007\/s10661-013-3398-6","article-title":"Occurrence and fate of selected human antibiotics in influents and effluents of sewage treatment plant and effluent-receiving river Yamuna in Delhi (India)","volume":"186","author":"Mutiyar","year":"2014","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0185","series-title":"Susceptibility Testing of Mycobacteria, Nocardiae, and Other Aerobic Actinomycetes: Approved Standard M24-A","author":"National Committee for Clinical Laboratory Standards","year":"2003"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0190","doi-asserted-by":"crossref","first-page":"4800","DOI":"10.1021\/es204665b","article-title":"Impact of treated wastewater irrigation on antibiotic resistance in agricultural soils","volume":"46","author":"Negreanu","year":"2012","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0195","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/S0168-6445(03)00048-2","article-title":"Efflux-mediated heavy metal resistance in prokaryotes","volume":"27","author":"Nies","year":"2003","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0200","series-title":"Future Challenges in Crop Protection Against Fungal Pathogens. Fungal Biology","article-title":"Understanding the mechanism involved in PGPR-mediated growth promotion and suppression of biotic and abiotic stress in plants","author":"Niranjana","year":"2014"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb1005","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/j.femsle.2005.02.034","article-title":"Update on acquired tetracycline resistance genes","volume":"245","author":"Roberts","year":"2005","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0205","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1089\/107662903322286463","article-title":"The role of Serratia marcescens porins in antibiotic resistance","volume":"9","author":"Ruiz","year":"2003","journal-title":"Microb. Drug Resist."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0210","doi-asserted-by":"crossref","first-page":"1181","DOI":"10.1007\/s10661-011-2031-9","article-title":"Heavy metal contamination in the Delhi segment of Yamuna basin","volume":"184","author":"Sehgal","year":"2012","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0215","doi-asserted-by":"crossref","first-page":"753","DOI":"10.1146\/annurev.micro.50.1.753","article-title":"Bacterial heavy metal resistance: new surprises","volume":"50","author":"Silver","year":"1996","journal-title":"Annu. Rev. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0220","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1016\/j.jgar.2017.05.012","article-title":"Antibiotic resistance of bacteria isolated from heavy metal-polluted soils with different land uses","volume":"10","author":"Sinegani","year":"2017","journal-title":"J. Glob. Antimicrob. Resist."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0225","series-title":"Aspects of Bacterial Resistance to Silver. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine","volume":"1084","author":"S\u00fctterlin","year":"2015"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0230","doi-asserted-by":"crossref","first-page":"1111","DOI":"10.1590\/S1517-838246420131366","article-title":"Antibiotic susceptibility profile of bacilli isolated from the skin of healthy humans","volume":"46","author":"Tarale","year":"2015","journal-title":"Braz. J. Microbiol."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0235","author":"The European Committee on Antimicrobial Susceptibility Testing (EUCAST)"},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0240","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1016\/j.aasci.2016.08.011","article-title":"Standards for the contents of heavy metals in soils of some states","volume":"14","author":"Vodyanitskii","year":"2016","journal-title":"Ann. Agrar. Sci."},{"key":"10.1016\/j.scitotenv.2018.09.078_bb0245","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1016\/j.addr.2005.04.002","article-title":"Bacterial resistance to antibiotics: enzymatic degradation and modification","volume":"57","author":"Wright","year":"2005","journal-title":"Adv. Drug Deliv. Rev."}],"container-title":["Science of The Total Environment"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0048969718335150?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0048969718335150?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T20:14:22Z","timestamp":1758658462000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0048969718335150"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,2]]},"references-count":51,"alternative-id":["S0048969718335150"],"URL":"https:\/\/doi.org\/10.1016\/j.scitotenv.2018.09.078","relation":{},"ISSN":["0048-9697"],"issn-type":[{"value":"0048-9697","type":"print"}],"subject":[],"published":{"date-parts":[[2019,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Convergent evolution in bacteria from multiple origins under antibiotic and heavy metal stress, and endophytic conditions of host plant","name":"articletitle","label":"Article Title"},{"value":"Science of The Total Environment","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.scitotenv.2018.09.078","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2018 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}]}}