{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T08:42:28Z","timestamp":1776760948278,"version":"3.51.2"},"reference-count":73,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","award":["REF341061127"],"award-info":[{"award-number":["REF341061127"]}],"id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Science of The Total Environment"],"published-print":{"date-parts":[[2022,2]]},"DOI":"10.1016\/j.scitotenv.2021.150996","type":"journal-article","created":{"date-parts":[[2021,10,15]],"date-time":"2021-10-15T17:57:04Z","timestamp":1634320624000},"page":"150996","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"special_numbering":"P3","title":["Identifying chemolithotrophic and pathogenic-related gene expression within suspended sediment flocs in freshwater environments: A metatranscriptomic assessment"],"prefix":"10.1016","volume":"807","author":[{"given":"Danielle","family":"VanMensel","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ian G.","family":"Droppo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christopher G.","family":"Weisener","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.scitotenv.2021.150996_bb0005","doi-asserted-by":"crossref","first-page":"3978","DOI":"10.1016\/S0043-1354(03)00301-4","article-title":"Fecal indicator bacteria are abundant in wet sand at freshwater beaches","volume":"37","author":"Alm","year":"2003","journal-title":"Water Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0010","doi-asserted-by":"crossref","first-page":"588","DOI":"10.1111\/j.1574-6976.2010.00216.x","article-title":"Common patterns - unique features: nitrogen metabolism and regulation in gram-positive bacteria","volume":"34","author":"Amon","year":"2010","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0015","doi-asserted-by":"crossref","first-page":"3825","DOI":"10.1029\/2017WR021876","article-title":"Nutrient loss rates in relation to transport time scales in a large shallow Lake (Lake St. Clair, USA\u2014Canada): insights from a three-dimensional model","volume":"54","author":"Bocaniov","year":"2018","journal-title":"Water Resour. Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0020","series-title":"Risk of Infection from Exposure to Waterborne Helicobacter pylori?","author":"Boehnke","year":"2017"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0025","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1029\/2010GC003380","article-title":"Grain size control of river suspended sediment geochemistry: clues from Amazon River depth profiles","volume":"12","author":"Bouchez","year":"2011","journal-title":"Geochem. Geophys. Geosyst."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0030","doi-asserted-by":"crossref","first-page":"9546","DOI":"10.1073\/pnas.0914005107","article-title":"Independent filtering increases detection power for high-throughput experiments","volume":"107","author":"Bourgon","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0035","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1080\/10643389.2012.710449","article-title":"Transport and fate of microbial pathogens in agricultural settings","volume":"43","author":"Bradford","year":"2013","journal-title":"Crit. Rev. Environ. Sci. Technol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0040","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1016\/j.jglr.2014.11.027","article-title":"Wildlife, urban inputs, and landscape configuration are responsible for degraded swimming water quality at an embayed beach","volume":"41","author":"Byappanahalli","year":"2015","journal-title":"J. Great Lakes Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0045","article-title":"Hydrodynamic controls of particulate metals partitioning along the lower selenga river-main tributary of the Lake baikal","volume":"12","author":"Chalov","year":"2020","journal-title":"Water (Switzerland)"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0050","series-title":"edgeR: Differential Analysis of Sequence Read Count Data User\u2019s Guide. R Packag","first-page":"1","author":"Chen","year":"2020"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0055","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1038\/nrmicro3238","article-title":"Coordination of microbial metabolism","volume":"12","author":"Chubukov","year":"2014","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0060","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1146\/annurev.mi.41.100187.002251","article-title":"Bacterial biofilms in nature and disease","volume":"41","author":"Costerton","year":"1987","journal-title":"Ann. Rev. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0065","doi-asserted-by":"crossref","first-page":"3481","DOI":"10.1073\/pnas.1121286109","article-title":"The protein SdhA maintains the integrity of the legionella-containing vacuole","volume":"109","author":"Creasey","year":"2012","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0070","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1371\/journal.pone.0238438","article-title":"Characterization of vibrio cholerae isolates from freshwater sources in Northwest Ohio","volume":"15","author":"Daboul","year":"2020","journal-title":"PLoS One"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0075","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12940-017-0347-9","article-title":"Estimate of incidence and cost of recreational waterborne illness on United States surface waters","volume":"17","author":"DeFlorio-Barker","year":"2018","journal-title":"Environ. Health"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0080","doi-asserted-by":"crossref","first-page":"736","DOI":"10.1007\/s00128-020-03019-0","article-title":"Evidence for microbial community effect on sediment equilibrium phosphorus concentration (EPC0)","volume":"105","author":"DiCarlo","year":"2020","journal-title":"Bull. Environ. Contam. Toxicol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0085","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1002\/hyp.228","article-title":"Rethinking what constitutes suspended sediment","volume":"15","author":"Droppo","year":"2001","journal-title":"Hydrol. Process."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0090","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1071\/MF08019","article-title":"Biofilm structure and bed stability of five contrasting freshwater sediments","volume":"60","author":"Droppo","year":"2009","journal-title":"Mar. Freshw. Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0095","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1023\/A:1018359726978","article-title":"The freshwater floc - a functional relationship of water and organic and inorganic floc constituents affecting suspended sediment properties","volume":"99","author":"Droppo","year":"1997","journal-title":"Water Air Soil Pollut."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0100","doi-asserted-by":"crossref","first-page":"1737","DOI":"10.1021\/es802321w","article-title":"Dynamic existence of waterborne pathogens within river sediment compartments. implications for water quality regulatory affairs","volume":"43","author":"Droppo","year":"2009","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0105","doi-asserted-by":"crossref","first-page":"364","DOI":"10.1111\/j.1574-6976.2011.00299.x","article-title":"Sergei winogradsky: a founder of modern microbiology and the first microbial ecologist","volume":"36","author":"Dworkin","year":"2012","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0110","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1016\/j.chemgeo.2013.11.017","article-title":"Collaborative microbial fe-redox cycling by pelagic floc bacteria across wide ranging oxygenated aquatic systems","volume":"366","author":"Elliott","year":"2014","journal-title":"Chem. Geol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0115","doi-asserted-by":"crossref","first-page":"4728","DOI":"10.1002\/anie.201408900","article-title":"From bacteria to mollusks: the principles underlying the biomineralization of iron oxide materials","volume":"54","author":"Faivre","year":"2015","journal-title":"Angew. Chem. Int. Ed."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0120","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/j.scitotenv.2019.06.451","article-title":"Microbial metatranscriptomic investigations across contaminant gradients of the Detroit River","volume":"690","author":"Falk","year":"2019","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0125","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1016\/j.marpolbul.2019.04.073","article-title":"The application of quantitative microbial risk assessment to natural recreational waters: a review","volume":"144","author":"Federigi","year":"2019","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0130","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1128\/aem.32.1.114-120.1976","article-title":"Effects of sediments on the survival of Escherichia coli in marine waters","volume":"32","author":"Gerba","year":"1976","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0135","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fmicb.2017.00282","article-title":"Fish as hosts of vibrio cholerae","volume":"8","author":"Halpern","year":"2017","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0140","doi-asserted-by":"crossref","first-page":"882","DOI":"10.1111\/jam.12559","article-title":"Viable Legionella pneumophila bacteria in natural soil and rainwater puddles","volume":"117","author":"van Heijnsbergen","year":"2014","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0145","first-page":"1","article-title":"Bioactive compounds from green microalga scenedesmus and its potential applications: a brief review","volume":"39","author":"Ishaq","year":"2016","journal-title":"Pertanika J. Trop. Agric. Sci."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0150","doi-asserted-by":"crossref","first-page":"A52","DOI":"10.1016\/j.vaccine.2019.06.033","article-title":"Environmental reservoirs of vibrio cholerae","volume":"38","author":"Islam","year":"2020","journal-title":"Vaccine"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0155","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1371\/journal.pone.0141150","article-title":"Auxosporulation in paralia Guyana macgillivary (bacillariophyta) and possible new insights into the habit of the earliest diatoms","volume":"10","author":"Kaczmarska","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0160","doi-asserted-by":"crossref","DOI":"10.1007\/s13127-020-00476-7","article-title":"Enlarge or die! An auxospore perspective on diatom diversification","author":"Kaczmarska","year":"2021","journal-title":"Org. Divers. Evol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0165","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/ncomms4804","article-title":"Chemodiversity of dissolved organic matter in lakes driven by climate and hydrology","volume":"5","author":"Kellerman","year":"2014","journal-title":"Nat. Commun."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0170","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-662-13187-9_79","article-title":"Introduction to the chemolithotrophic bacteria","volume":"997\u20131004","author":"Kelly","year":"1981","journal-title":"The Prokaryotes"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0175","doi-asserted-by":"crossref","first-page":"315","DOI":"10.1111\/j.1574-6976.1997.tb00317.x","article-title":"Bacterial iron biomineralisation in nature","volume":"20","author":"Konhauser","year":"1997","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0180","doi-asserted-by":"crossref","first-page":"4905","DOI":"10.1021\/acs.est.5b06186","article-title":"Untangling the impacts of climate change on waterborne diseases: a systematic review of relationships between diarrheal diseases and temperature, rainfall, flooding, and drought","volume":"50","author":"Levy","year":"2016","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0185","doi-asserted-by":"crossref","first-page":"1625","DOI":"10.1128\/AEM.02583-15","article-title":"Ultrafiltration and microarray detect microbial source tracking marker and pathogen genes in riverine and marine systems","volume":"82","author":"Li","year":"2016","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0190","first-page":"2000","article-title":"Microbial flocs suspended biofilms","volume":"Vol. 4","author":"Liss","year":"2002"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0195","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1029\/2010JF001947","article-title":"A rouse-based method to integrate the chemical composition of river sediments: application to the ganga basin","volume":"116","author":"Lupker","year":"2011","journal-title":"J. Geophys. Res. Earth Surf."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0200","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1016\/j.jglr.2019.12.005","article-title":"Three dimensional modelling to assess contributions of major tributaries to fecal microbial pollution of Lake St. Clair and Sandpoint Beach","volume":"46","author":"Madani","year":"2020","journal-title":"J. Great Lakes Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0205","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1016\/j.scitotenv.2018.03.188","article-title":"Increased nutrient concentrations in Lake Erie tributaries influenced by greenhouse agriculture","volume":"633","author":"Maguire","year":"2018","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0210","doi-asserted-by":"crossref","first-page":"99","DOI":"10.2166\/wqrjc.2013.132","article-title":"Occurrence and predictive correlations of Escherichia coli and Enterococci at Sandpoint beach (Lake St Clair), Windsor, Ontario and holiday beach (Lake Erie), Amherstburg, Ontario","volume":"48","author":"McPhedran","year":"2013","journal-title":"Water Qual. Res. J. Can."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0215","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-9-386","article-title":"The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes","volume":"9","author":"Meyer","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0220","series-title":"Detection and Widespread Distribution of the nrfA Gene Encoding Nitrite Reduction to Ammonia, A Short Circuit in the Biological Nitrogen Cycle That Competes With Denitrification","first-page":"433","volume":"49","author":"Mohan","year":"2004"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0225","doi-asserted-by":"crossref","first-page":"360","DOI":"10.1016\/j.watres.2017.02.057","article-title":"Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens","volume":"115","author":"Mohiuddin","year":"2017","journal-title":"Water Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0230","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/j.jglr.2018.10.007","article-title":"Temporal and spatial changes in bacterial diversity in mixed use watersheds of the Great Lakes region","volume":"45","author":"Mohiuddin","year":"2019","journal-title":"J. Great Lakes Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0235","doi-asserted-by":"crossref","DOI":"10.1016\/j.algal.2020.101911","article-title":"An assessment of heterotrophy and mixotrophy in scenedesmus and its utilization in wastewater treatment","volume":"48","author":"Msanne","year":"2020","journal-title":"Algal Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0240","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1007\/s000270050044","article-title":"Influence of catchment quality and altitude on the water and sediment composition of 68 small lakes in Central Europe","volume":"60","author":"M\u00fcller","year":"1998","journal-title":"Aquat. Sci."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0245","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1038\/ismej.2008.81","article-title":"Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities","volume":"3","author":"Nelson","year":"2009","journal-title":"ISME J."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0250","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1093\/bioinformatics\/btw624","article-title":"The START app: a web-based RNAseq analysis and visualization resource","volume":"33","author":"Nelson","year":"2017","journal-title":"Bioinformatics"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0255","doi-asserted-by":"crossref","first-page":"2212","DOI":"10.1002\/2014JC010457","article-title":"Investigation of interbasin exchange and interannual variability in Lake Erie using an unstructured-grid hydrodynamic model","volume":"120","author":"Niu","year":"2015","journal-title":"J. Geophys. Res. Oceans"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0260","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1111\/j.1574-6976.2009.00200.x","article-title":"Recent findings on the viable but nonculturable state in pathogenic bacteria","volume":"34","author":"Oliver","year":"2010","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0265","doi-asserted-by":"crossref","first-page":"1973","DOI":"10.1016\/j.watres.2010.09.018","article-title":"Controlling harmful cyanobacterial blooms in a hyper-eutrophic lake (Lake Taihu, China): The need for a dual nutrient (N & P) management strategy","volume":"45","author":"Paerl","year":"2011","journal-title":"Water Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0270","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13568-014-0051-x","article-title":"Contamination of water resources by pathogenic bacteria","volume":"4","author":"Pandey","year":"2014","journal-title":"AMB Express"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0275","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2019.115167","article-title":"Tracking functional bacterial biomarkers in response to a gradient of contaminant exposure within a river continuum","volume":"168","author":"Reid","year":"2020","journal-title":"Water Res."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0280","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1007\/s00253-010-2838-2","article-title":"Storage of environmental samples for guaranteeing nucleic acid yields for molecular microbiological studies","volume":"88","author":"Rissanen","year":"2010","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0285","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"edgeR: a bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0290","doi-asserted-by":"crossref","DOI":"10.1007\/s41207-017-0035-8","article-title":"Assessment of the microbiological quality of recreational waters: indicators and methods","volume":"2","author":"Rodrigues","year":"2017","journal-title":"Euro-Mediterranean J. Environ. Integr."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0295","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0104134","article-title":"16S rRNA gene survey of microbial communities in Winogradsky columns","volume":"9","author":"Rundell","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0300","doi-asserted-by":"crossref","first-page":"8923","DOI":"10.1021\/acs.est.6b02204","article-title":"Reducing phosphorus to curb lake eutrophication is a success","volume":"50","author":"Schindler","year":"2016","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0305","doi-asserted-by":"crossref","first-page":"37","DOI":"10.2166\/wh.2018.108","article-title":"Assessing high-throughput environmental DNA extraction methods for meta-barcode characterization of aquatic microbial communities","volume":"17","author":"Shahraki","year":"2019","journal-title":"J. Water Health"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0310","doi-asserted-by":"crossref","first-page":"271","DOI":"10.4269\/ajtmh.1999.60.271","article-title":"Transmission of epidemic Vibrio cholerae O1 in rural western Kenya associated with drinking water from Lake Victoria: an environmental reservoir for cholera?","volume":"60","author":"Shapiro","year":"1999","journal-title":"Am. J. Trop. Med. Hyg."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0315","doi-asserted-by":"crossref","first-page":"2876","DOI":"10.1074\/jbc.M110230200","article-title":"Cell surface-localized nucleolin is a eukaryotic receptor for the adhesin intimin-\u03b3 of enterohemorrhagic Escherichia coli O157:H7","volume":"277","author":"Sinclair","year":"2002","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0320","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1139\/cjm-2014-0815","article-title":"Influence of wave action on the partitioning and transport of unattached and floc-associated bacteria in fresh water","volume":"61","author":"Sousa","year":"2015","journal-title":"Can. J. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0325","doi-asserted-by":"crossref","first-page":"1070","DOI":"10.1016\/j.chemosphere.2018.07.108","article-title":"Human activities altered water N: P ratios in the populated regions of China","volume":"210","author":"Tong","year":"2018","journal-title":"Chemosphere"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0330","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1073\/pnas.1920759117","article-title":"Improvement in municipal wastewater treatment alters lake nitrogen to phosphorus ratios in populated regions","volume":"117","author":"Tong","year":"2020","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0335","doi-asserted-by":"crossref","first-page":"568","DOI":"10.1111\/1462-2920.14860","article-title":"Exploring bacterial pathogen community dynamics in freshwater beach sediments: a tale of two lakes","volume":"22","author":"VanMensel","year":"2020","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0340","doi-asserted-by":"crossref","first-page":"1993","DOI":"10.1099\/mic.0.2006\/005173-0","article-title":"Growth of Vibrio cholerae O1 Ogawa Eltor in freshwater","volume":"153","author":"Vital","year":"2007","journal-title":"Microbiology"},{"key":"10.1016\/j.scitotenv.2021.150996_bb0345","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1177\/1757913918791198","article-title":"The influence of climate change on waterborne disease and Legionella: a review","volume":"138","author":"Walker","year":"2018","journal-title":"Perspect. Public Health"},{"key":"10.1016\/j.scitotenv.2021.150996_bb6005","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1016\/B978-0-12-407863-5.00022-8","article-title":"A metagenomics portal for a democratized sequencing world","volume":"531","author":"Wilke","year":"2013","journal-title":"Methods Enzymol."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0350","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1899\/0887-3593(2007)26[1:DBBPEA]2.0.CO;2","article-title":"Do benthic biologists pay enough attention to aggregates formed in the water column of streams and rivers?","volume":"26","author":"Wotton","year":"2007","journal-title":"J. N. Am. Benthol. Soc."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0355","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1111\/j.1752-1688.2008.00287.x","article-title":"Fate and transport modeling of potential pathogens: the contribution from sediments","volume":"45","author":"Wu","year":"2009","journal-title":"J. Am. Water Resour. Assoc."},{"key":"10.1016\/j.scitotenv.2021.150996_bb0360","doi-asserted-by":"crossref","first-page":"863","DOI":"10.1039\/C8EM00042E","article-title":"The cycle of nitrogen in river systems: sources, transformation, and flux","volume":"20","author":"Xia","year":"2018","journal-title":"Environ. Sci. Process. Impacts"}],"container-title":["Science of The Total Environment"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0048969721060745?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0048969721060745?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,24]],"date-time":"2025-09-24T13:31:55Z","timestamp":1758720715000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0048969721060745"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,2]]},"references-count":73,"alternative-id":["S0048969721060745"],"URL":"https:\/\/doi.org\/10.1016\/j.scitotenv.2021.150996","relation":{},"ISSN":["0048-9697"],"issn-type":[{"value":"0048-9697","type":"print"}],"subject":[],"published":{"date-parts":[[2022,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Identifying chemolithotrophic and pathogenic-related gene expression within suspended sediment flocs in freshwater environments: A metatranscriptomic assessment","name":"articletitle","label":"Article Title"},{"value":"Science of The Total Environment","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.scitotenv.2021.150996","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2021 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"150996"}}