{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,31]],"date-time":"2026-10-31T01:21:50Z","timestamp":1793409710387,"version":"4.5.0"},"reference-count":725,"publisher":"Westerdijk Fungal Biodiversity Institute","issue":"1","license":[{"start":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T00:00:00Z","timestamp":1630454400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2021,3,16]],"date-time":"2021-03-16T00:00:00Z","timestamp":1615852800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Studies in Mycology"],"published-print":{"date-parts":[[2021,9,1]]},"abstract":"<jats:p>\n                    The airborne fungus\n                    <jats:italic>Aspergillus fumigatus<\/jats:italic>\n                    poses a serious health threat to humans by causing numerous invasive infections and a notable mortality in humans, especially in immunocompromised patients. Mould-active azoles are the frontline therapeutics employed to treat aspergillosis.\n The global emergence of azole-resistant\n                    <jats:italic>A<\/jats:italic>\n                    .\n                    <jats:italic>fumigatus<\/jats:italic>\n                    isolates in clinic and environment, however, notoriously limits the therapeutic options of mould-active antifungals and potentially can be attributed to a mortality rate reaching up to 100\u00a0%. Although specific mutations\n in\n                    <jats:italic>CYP<\/jats:italic>\n                    <jats:italic>51A<\/jats:italic>\n                    are the main cause of azole resistance, there is a new wave of azole-resistant isolates with wild-type\n                    <jats:italic>CYP<\/jats:italic>\n                    <jats:italic>51A<\/jats:italic>\n                    genotype challenging the efficacy of the current diagnostic tools. Therefore, applications of whole-genome sequencing are increasingly gaining\n popularity to overcome such challenges. Prominent echinocandin tolerance, as well as liver and kidney toxicity posed by amphotericin B, necessitate a continuous quest for novel antifungal drugs to combat emerging azole-resistant\n                    <jats:italic>A<\/jats:italic>\n                    .\n                    <jats:italic>fumigatus<\/jats:italic>\n                    isolates. Animal models and the tools\n used for genetic engineering require further refinement to facilitate a better understanding about the resistance mechanisms, virulence, and immune reactions orchestrated against\n                    <jats:italic>A<\/jats:italic>\n                    .\n                    <jats:italic>fumigatus<\/jats:italic>\n                    . This review paper comprehensively discusses the current clinical challenges caused\n by\n                    <jats:italic>A<\/jats:italic>\n                    .\n                    <jats:italic>fumigatus<\/jats:italic>\n                    and provides insights on how to address them.\n                  <\/jats:p>","DOI":"10.1016\/j.simyco.2021.100115","type":"journal-article","created":{"date-parts":[[2021,5,10]],"date-time":"2021-05-10T06:11:32Z","timestamp":1620627092000},"page":"100115-100115","source":"Crossref","is-referenced-by-count":236,"title":["<i>Aspergillus fumigatus<\/i>\n                    and aspergillosis: From basics to clinics"],"prefix":"10.3114","volume":"100","author":[{"given":"A.","family":"Arastehfar","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A.","family":"Carvalho","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Houbraken","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"L.","family":"Lombardi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Garcia-Rubio","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.D.","family":"Jenks","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"O.","family":"Rivero-Menendez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Aljohani","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"I.D.","family":"Jacobsen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Berman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N.","family":"Osherov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.T.","family":"Hedayati","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Ilkit","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.","family":"Armstrong-James","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"T.","family":"Gabald\u00f3n","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Meletiadis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Kostrzewa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"W.","family":"Pan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Lass-Fl\u00f6rl","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.S.","family":"Perlin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Hoenigl","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1645","reference":[{"key":"10.1016\/j.simyco.2021.100115_bib1","doi-asserted-by":"crossref","first-page":"2234","DOI":"10.3389\/fmicb.2018.02234","article-title":"Surveillance for azole-resistant Aspergillus fumigatus in a centralized diagnostic mycology service, London, United Kingdom, 1998\u20132017","volume":"9","author":"Abdolrasouli","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib2","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.00939-15","article-title":"Genomic context of azole resistance mutations in Aspergillus fumigatus determined using whole-genome sequencing","volume":"6","author":"Abdolrasouli","year":"2015","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib3","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1016\/j.ijantimicag.2018.08.004","article-title":"High prevalence of triazole resistance in clinical Aspergillus fumigatus isolates in a specialist cardiothoracic centre","volume":"52","author":"Abdolrasouli","year":"2018","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib4","doi-asserted-by":"crossref","first-page":"850","DOI":"10.1111\/cea.12141","article-title":"Allergic bronchopulmonary aspergillosis: review of literature and proposal of new diagnostic and classification criteria","volume":"43","author":"Agarwal","year":"2013","journal-title":"Clinical and Experimental Allergy"},{"key":"10.1016\/j.simyco.2021.100115_bib5","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1111\/myc.13064","article-title":"First azole-resistant Aspergillus fumigatus isolates with the environmental TR46\/Y121F\/T289A mutation in Iran","volume":"63","author":"Ahangarkani","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib6","doi-asserted-by":"crossref","first-page":"412","DOI":"10.1093\/jac\/dku410","article-title":"Concomitant occurrence of itraconazole-resistant and -susceptible strains of Aspergillus fumigatus in routine cultures","volume":"70","author":"Ahmad","year":"2015","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib7","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.envres.2014.05.009","article-title":"Occurrence of triazole-resistant Aspergillus fumigatus with TR34\/L98H mutations in outdoor and hospital environment in Kuwait","volume":"133","author":"Ahmad","year":"2014","journal-title":"Environmental Research"},{"key":"10.1016\/j.simyco.2021.100115_bib8","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00446-17","article-title":"A\u00a0simple and universal system for gene manipulation in Aspergillus fumigatus: In\u00a0vitro-assembled Cas9-guide RNA ribonucleoproteins coupled with microhomology repair templates","volume":"2","author":"Al Abdallah","year":"2017","journal-title":"mSphere"},{"key":"10.1016\/j.simyco.2021.100115_bib9","doi-asserted-by":"crossref","first-page":"e48","DOI":"10.1016\/S2213-2600(20)30237-X","article-title":"Prevalence of putative invasive pulmonary aspergillosis in critically ill patients with COVID-19","volume":"8","author":"Alanio","year":"2020","journal-title":"Lancet Respiratory Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib10","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1093\/jac\/dkq450","article-title":"Low prevalence of resistance to azoles in Aspergillus fumigatus in a French cohort of patients treated for haematological malignancies","volume":"66","author":"Alanio","year":"2011","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib11","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1007\/s11046-014-9775-z","article-title":"Antifungal susceptibility profile of cryptic species of Aspergillus","volume":"178","author":"Alastruey-Izquierdo","year":"2014","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib12","doi-asserted-by":"crossref","first-page":"4604","DOI":"10.1128\/AAC.01287-13","article-title":"Population-based survey of filamentous fungi and antifungal resistance in Spain (FILPOP Study)","volume":"57","author":"Alastruey-Izquierdo","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib13","doi-asserted-by":"crossref","first-page":"5113","DOI":"10.1128\/AAC.00517-11","article-title":"Interrogation of related clinical pan-azole-resistant Aspergillus fumigatus strains: G138C, Y431C, and G434C single nucleotide polymorphisms in cyp51A, upregulation of cyp51A, and integration and activation of transposon Atf1 in the cyp51A promoter","volume":"55","author":"Albarrag","year":"2011","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib14","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1080\/21505594.2015.1025192","article-title":"An alternative host model of a mixed fungal infection by azole susceptible and resistant Aspergillus spp strains","volume":"6","author":"Alcazar-Fuoli","year":"2015","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib15","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1016\/j.steroids.2007.11.005","article-title":"Ergosterol biosynthesis pathway in Aspergillus fumigatus","volume":"73","author":"Alcazar-Fuoli","year":"2008","journal-title":"Steroids"},{"key":"10.1016\/j.simyco.2021.100115_bib16","doi-asserted-by":"crossref","DOI":"10.1093\/omcr\/omz147","article-title":"Native valve fungal endocarditis caused by Aspergillus fumigatus: management dilemma","volume":"2020","author":"Aldosari","year":"2020","journal-title":"Oxford Medical Case Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib17","doi-asserted-by":"crossref","first-page":"1025","DOI":"10.1002\/cncr.11115","article-title":"Refractory Aspergillus pneumonia in patients with acute leukemia: successful therapy with combination caspofungin and liposomal amphotericin","volume":"97","author":"Aliff","year":"2003","journal-title":"Cancer"},{"key":"10.1016\/j.simyco.2021.100115_bib18","doi-asserted-by":"crossref","first-page":"751","DOI":"10.1016\/j.sjbs.2019.12.030","article-title":"Evaluation of molecular identification of Aspergillus species causing fungal keratitis","volume":"27","author":"Alshehri","year":"2020","journal-title":"Saudi Journal of Biological Sciences"},{"key":"10.1016\/j.simyco.2021.100115_bib19","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1186\/s12915-019-0702-0","article-title":"Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A.\u00a0flavus, and sexual aberrancy in non-homologous end-joining mutants","volume":"17","author":"\u00c1lvarez-Escribano","year":"2019","journal-title":"BMC Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib20","doi-asserted-by":"crossref","first-page":"45631","DOI":"10.1038\/srep45631","article-title":"Azole-resistant Aspergillus fumigatus harboring TR34\/L98H, TR46\/Y121F\/T289A and TR53 mutations related to flower fields in Colombia","volume":"7","author":"\u00c1lvarez-Moreno","year":"2017","journal-title":"Scientific Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib21","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1080\/00275514.2018.1557796","article-title":"Fungicide-driven alterations in azole-resistant Aspergillus fumigatus are related to vegetable crops in Colombia, South America","volume":"111","author":"\u00c1lvarez-Moreno","year":"2019","journal-title":"Mycologia"},{"key":"10.1016\/j.simyco.2021.100115_bib22","doi-asserted-by":"crossref","first-page":"322","DOI":"10.1093\/mmy\/myz066","article-title":"Evaluating VITEK MS for the identification of clinically relevant Aspergillus species","volume":"58","author":"Am\u00e9rico","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib23","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.02752-19","article-title":"Three-dimensional light sheet fluorescence microscopy of lungs to dissect local host immune-Aspergillus fumigatus interactions","volume":"11","author":"Amich","year":"2020","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib24","doi-asserted-by":"crossref","first-page":"128","DOI":"10.1016\/j.mycmed.2010.03.004","article-title":"Aspergillus sclerotiorum: \u00e0 propos d\u2019un cas d\u2019onychomycose en Tunisie","volume":"20","author":"Amri","year":"2020","journal-title":"Journal of Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib25","doi-asserted-by":"crossref","first-page":"91","DOI":"10.3390\/jof6020091","article-title":"COVID-19 associated pulmonary aspergillosis (CAPA) \u2013From immunology to treatment","volume":"6","author":"Arastehfar","year":"2020","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib26","doi-asserted-by":"crossref","first-page":"E138","DOI":"10.3390\/jof6030138","article-title":"The quiet and underappreciated rise of drug-resistant invasive fungal pathogens","volume":"6","author":"Arastehfar","year":"2020","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib27","doi-asserted-by":"crossref","first-page":"1464","DOI":"10.1016\/j.cmi.2020.06.007","article-title":"How to interpret MICs of antifungal compounds according to the revised clinical breakpoints v. 10.0 European committee on antimicrobial susceptibility testing (EUCAST)","volume":"26","author":"Arendrup","year":"2020","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib28","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0010080","article-title":"Development of azole resistance in Aspergillus fumigatus during azole therapy associated with change in virulence","volume":"5","author":"Arendrup","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib29","series-title":"EUCAST Definitive Document E.DEF 9.3.1: Method for the determination of broth dilution minimum inhibitory concentrations of antifungal agents for conidia forming moulds","author":"Arendrup","year":"2017"},{"key":"10.1016\/j.simyco.2021.100115_bib30","doi-asserted-by":"crossref","first-page":"3504","DOI":"10.1128\/AAC.00190-08","article-title":"Establishing in\u00a0vitro-in\u00a0vivo correlations for Aspergillus fumigatus: the challenge of azoles versus echinocandins","volume":"52","author":"Arendrup","year":"2008","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib31","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01659-16","article-title":"Evaluation of MIC strip isavuconazole test for susceptibility testing of wild-type and non-wild-type Aspergillus fumigatus isolates","volume":"61","author":"Arendrup","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib32","doi-asserted-by":"crossref","first-page":"3325","DOI":"10.1093\/jac\/dkx319","article-title":"Multicentre validation of 4-well azole agar plates as a screening method for detection of clinically relevant azole-resistant Aspergillus fumigatus","volume":"72","author":"Arendrup","year":"2017","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib33","doi-asserted-by":"crossref","first-page":"e00399","DOI":"10.1128\/AAC.00399-19","article-title":"Echinocandins for the treatment of invasive aspergillosis: from laboratory to bedside","volume":"63","author":"Aruanno","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib34","doi-asserted-by":"crossref","first-page":"3731","DOI":"10.1128\/JCM.01365-14","article-title":"PCR in diagnosis of invasive aspergillosis: a meta-analysis of diagnostic performance","volume":"52","author":"Arvanitis","year":"2014","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib35","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1007\/s10156-010-0202-1","article-title":"Molecular typing and in-vitro activity of azoles against clinical isolates of Aspergillus fumigatus and A.\u00a0niger in Japan","volume":"17","author":"Asano","year":"2011","journal-title":"Journal of Infection and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib36","doi-asserted-by":"crossref","first-page":"1162","DOI":"10.1093\/jac\/dkt508","article-title":"Therapeutic drug monitoring (TDM) of antifungal agents: guidelines from the British Society for Medical Mycology","volume":"69","author":"Ashbee","year":"2014","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib37","doi-asserted-by":"crossref","first-page":"5096","DOI":"10.1128\/AAC.02855-14","article-title":"First detection of TR46\/Y121F\/T289A and TR34\/L98H alterations in Aspergillus fumigatus isolates from azole-na\u00efve patients in Denmark despite negative findings in the environment","volume":"58","author":"Astvad","year":"2014","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib38","doi-asserted-by":"crossref","first-page":"e00895","DOI":"10.1128\/AAC.00895-17","article-title":"Fluconazole pharmacokinetics in Galleria mellonella larvae and performance evaluation of a bioassay compared to liquid chromatography-tandem mass spectrometry for hemolymph specimens","volume":"61","author":"Astvad","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib39","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01624-18","article-title":"Implications of the EUCAST trailing phenomenon in Candida tropicalis for the in\u00a0vivo susceptibility in invertebrate and murine models","volume":"62","author":"Astvad","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib40","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1007\/BF00444031","article-title":"Maxillary sinusitis from Microascus cinereus and Aspergillus repens","volume":"105","author":"Aznar","year":"1989","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib41","doi-asserted-by":"crossref","first-page":"509827","DOI":"10.1155\/2015\/509827","article-title":"Rare case of Aspergillus ochraceus osteomyelitis of calcaneus bone in a patient with diabetic foot ulcers","volume":"2015","author":"Babamahmoodi","year":"2015","journal-title":"Case Reports in Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib42","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1111\/myc.12089","article-title":"Environmental study of azole-resistant Aspergillus fumigatus with TR34\/L98H mutations in the cyp51A gene in Iran","volume":"56","author":"Badali","year":"2013","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib43","doi-asserted-by":"crossref","first-page":"4356","DOI":"10.1128\/AAC.00100-15","article-title":"Environmental isolates of azole-resistant Aspergillus fumigatus in Germany","volume":"59","author":"Bader","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib44","doi-asserted-by":"crossref","first-page":"1469","DOI":"10.1128\/JCM.00064-07","article-title":"Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus","volume":"45","author":"Bain","year":"2007","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib45","doi-asserted-by":"crossref","first-page":"625","DOI":"10.1128\/EC.4.3.625-632.2005","article-title":"Aspergillus lentulus sp. nov., a new sibling species of A.\u00a0fumigatus","volume":"4","author":"Balajee","year":"2005","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib46","doi-asserted-by":"crossref","first-page":"39","DOI":"10.3114\/sim.2007.59.05","article-title":"Aspergillus species identification in the clinical setting","volume":"59","author":"Balajee","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib47","doi-asserted-by":"crossref","first-page":"3138","DOI":"10.1128\/JCM.01070-09","article-title":"Molecular identification of Aspergillus species collected for the Transplant-Associated Infection Surveillance Network","volume":"47","author":"Balajee","year":"2009","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib48","doi-asserted-by":"crossref","first-page":"1392","DOI":"10.1128\/EC.00164-07","article-title":"Characterization of a novel gene for strain typing reveals substructuring of Aspergillus fumigatus across North America","volume":"6","author":"Balajee","year":"2007","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib49","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.fgb.2018.02.003","article-title":"In-host microevolution of Aspergillus fumigatus: A phenotypic and genotypic analysis","volume":"113","author":"Ballard","year":"2018","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib50","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1016\/j.fgb.2019.05.005","article-title":"Recreation of in-host acquired single nucleotide polymorphisms by CRISPR-Cas9 reveals an uncharacterised gene playing a role in Aspergillus fumigatus azole resistance via a non-cyp51A mediated resistance mechanism","volume":"130","author":"Ballard","year":"2019","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib51","doi-asserted-by":"crossref","first-page":"6865","DOI":"10.1007\/s00253-018-9161-8","article-title":"Improved and adopted murine models to combat pulmonary aspergillosis","volume":"102","author":"Banfalvi","year":"2018","journal-title":"Applied Microbiology and Biotechnology"},{"key":"10.1016\/j.simyco.2021.100115_bib52","doi-asserted-by":"crossref","first-page":"2413","DOI":"10.1128\/JCM.36.9.2413-2418.1998","article-title":"Microsatellite markers for typing Aspergillus fumigatus isolates","volume":"36","author":"Bart-Delabesse","year":"1998","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib53","article-title":"Epidemiology of invasive pulmonary aspergillosis among COVID-19 intubated patients: a prospective study","volume":"28","author":"Bartoletti","year":"2021","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib54","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1016\/j.jinf.2020.03.065","article-title":"Performance of existing definitions and tests for the diagnosis of invasive aspergillosis in critically ill, adult patients: A systematic review with qualitative evidence synthesis","volume":"81","author":"Bassetti","year":"2020","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib55","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1007\/s40121-017-0183-9","article-title":"Challenges and solution of invasive aspergillosis in non-neutropenic patients: A review","volume":"7","author":"Bassetti","year":"2018","journal-title":"Infectious Diseases and Therapy"},{"key":"10.1016\/j.simyco.2021.100115_bib56","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00153-20","article-title":"Functional characterization of clinical isolates of the opportunistic fungal pathogen Aspergillus nidulans","volume":"5","author":"Bastos","year":"2020","journal-title":"mSphere"},{"key":"10.1016\/j.simyco.2021.100115_bib57","doi-asserted-by":"crossref","first-page":"638","DOI":"10.1136\/thx.2010.155515","article-title":"Pulmonary aspergillosis: an alternative diagnosis to lung cancer after positive [18F]FDG positron emission tomography","volume":"66","author":"Baxter","year":"2011","journal-title":"Thorax"},{"key":"10.1016\/j.simyco.2021.100115_bib58","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1080\/13693780500271749","article-title":"Pathophysiology of unilateral pulmonary aspergillosis in an experimental rat model","volume":"44","author":"Becker","year":"2006","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib59","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1099\/jmm.0.005488-0","article-title":"Aspergillus fumigatus germ tube growth and not conidia ingestion induces expression of inflammatory mediator genes in the human lung epithelial cell line A549","volume":"58","author":"Bellanger","year":"2009","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib60","doi-asserted-by":"crossref","first-page":"197","DOI":"10.3109\/13693780902717018","article-title":"Acquired resistance to voriconazole and itraconazole in a patient with pulmonary aspergilloma","volume":"48","author":"Bellete","year":"2010","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib61","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1007\/s15010-017-1042-z","article-title":"Pharmacokinetics of antifungal drugs: practical implications for optimized treatment of patients","volume":"45","author":"Bellmann","year":"2017","journal-title":"Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib62","doi-asserted-by":"crossref","first-page":"1079","DOI":"10.1164\/ajrccm.152.3.7663787","article-title":"Pathogenesis of pulmonary aspergillosis. Granulocytopenia versus cyclosporine and methylprednisolone-induced immunosuppression","volume":"152","author":"Berenguer","year":"1995","journal-title":"American Journal of Respiratory and Critical Care Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib63","doi-asserted-by":"crossref","first-page":"1831","DOI":"10.1182\/blood-2011-04-351601","article-title":"The strategy for the diagnosis of invasive pulmonary aspergillosis should depend on both the underlying condition and the leukocyte count of patients with hematologic malignancies","volume":"119","author":"Bergeron","year":"2012","journal-title":"Blood"},{"key":"10.1016\/j.simyco.2021.100115_bib64","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.02240-17","article-title":"Detection of TR34\/L98H CYP51A mutation through passive surveillance for azole-resistant Aspergillus fumigatus in the United States from 2015 to 2017","volume":"62","author":"Berkow","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib65","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1038\/s41579-019-0322-2","article-title":"Drug resistance and tolerance in fungi","volume":"18","author":"Berman","year":"2020","journal-title":"Nature Reviews Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib66","doi-asserted-by":"crossref","first-page":"e01083","DOI":"10.1128\/AAC.01083-17","article-title":"Development and validation of a high-resolution melting assay to detect azole resistance in Aspergillus fumigatus","volume":"61","author":"Bernal-Mart\u00ednez","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib67","doi-asserted-by":"crossref","first-page":"1731","DOI":"10.1128\/JCM.39.5.1731-1737.2001","article-title":"Genetic polymorphism of Aspergillus fumigatus in clinical samples from patients with invasive aspergillosis: investigation using multiple typing methods","volume":"39","author":"Bertout","year":"2001","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib68","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1099\/0022-1317-49-4-375","article-title":"Multilocus enzyme electrophoresis analysis of Aspergillus fumigatus strains isolated from the first clinical sample from patients with invasive aspergillosis. EBGA Network. European Research Group on Biotype and Genotype of Aspergillus","volume":"49","author":"Bertout","year":"2000","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib69","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1005637","article-title":"A\u00a0sweet response to a sour situation: The role of soluble pattern pecognition receptors in the innate immune response to invasive Aspergillus fumigatus infections","volume":"12","author":"Bidula","year":"2016","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib70","doi-asserted-by":"crossref","first-page":"234","DOI":"10.1093\/infdis\/jiv027","article-title":"The serum opsonin L-ficolin is detected in lungs of human transplant recipients following fungal infections and modulates inflammation and killing of Aspergillus fumigatus","volume":"212","author":"Bidula","year":"2015","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib71","doi-asserted-by":"crossref","first-page":"3679","DOI":"10.2174\/13816128113199990366","article-title":"New insights into invasive aspergillosis \u2013 from the pathogen to the disease","volume":"19","author":"Binder","year":"2013","journal-title":"Current Pharmaceutical Design"},{"key":"10.1016\/j.simyco.2021.100115_bib72","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1016\/j.funbio.2015.06.002","article-title":"Galleria mellonella: An invertebrate model to study pathogenicity in correctly defined fungal species","volume":"120","author":"Binder","year":"2016","journal-title":"Fungal Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib73","doi-asserted-by":"crossref","first-page":"1636","DOI":"10.3201\/eid2607.201603","article-title":"Fatal invasive aspergillosis and coronavirus disease in an immunocompetent patient","volume":"26","author":"Blaize","year":"2020","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib74","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1016\/j.mib.2017.11.015","article-title":"Metal-homeostasis in the pathobiology of the opportunistic human fungal pathogen Aspergillus fumigatus","volume":"40","author":"Blatzer","year":"2017","journal-title":"Current Opinion in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib75","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1128\/AAC.05027-11","article-title":"SREBP-dependent triazole susceptibility in Aspergillus fumigatus is mediated through direct transcriptional regulation of erg11A (cyp51A)","volume":"56","author":"Blosser","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib76","doi-asserted-by":"crossref","first-page":"1583","DOI":"10.1128\/AAC.01283-12","article-title":"New insight into amphotericin B resistance in Aspergillus terreus","volume":"57","author":"Blum","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib77","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1111\/j.1469-0691.2008.02099.x","article-title":"A\u00a01-year Aspergillus terreus surveillance study at the University Hospital of Innsbruck: molecular typing of environmental and clinical isolates","volume":"14","author":"Blum","year":"2008","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib78","doi-asserted-by":"crossref","first-page":"e159","DOI":"10.1093\/cid\/cir731","article-title":"Invasive mold infections in chronic granulomatous disease: a 25-year retrospective survey","volume":"53","author":"Blumental","year":"2011","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib79","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1007\/s11046-017-0222-9","article-title":"A\u00a0review of onychomycosis due to Aspergillus species","volume":"183","author":"Bongomin","year":"2018","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib80","doi-asserted-by":"crossref","first-page":"1267","DOI":"10.1086\/315027","article-title":"Proteases from Aspergillus fumigatus induce interleukin (IL)-6 and IL-8 production in airway epithelial cell lines by transcriptional mechanisms","volume":"180","author":"Borger","year":"1999","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib81","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1007\/s11046-019-00383-2","article-title":"Onychomycosis associated with superficial skin infection due to Aspergillus sydowii in an immunocompromised patient","volume":"184","author":"Borgohain","year":"2019","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib82","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1146\/annurev.micro.56.012302.160625","article-title":"Menacing mold: the molecular biology of Aspergillus fumigatus","volume":"56","author":"Brakhage","year":"2002","journal-title":"Annual Review of Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib83","doi-asserted-by":"crossref","first-page":"658","DOI":"10.1080\/13693780902803032","article-title":"Nail infection by Aspergillus ochraceopetaliformis","volume":"47","author":"Brasch","year":"2009","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib84","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1016\/j.mib.2009.05.004","article-title":"Fungal metabolism in host niches","volume":"12","author":"Brock","year":"2009","journal-title":"Current Opinion in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib85","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1016\/j.jgar.2014.05.004","article-title":"Occurrence of azole-resistant species of Aspergillus in the UK environment","volume":"2","author":"Bromley","year":"2014","journal-title":"Journal of Global Antimicrobial Resistance"},{"key":"10.1016\/j.simyco.2021.100115_bib86","doi-asserted-by":"crossref","first-page":"165rv113","DOI":"10.1126\/scitranslmed.3004404","article-title":"Hidden killers: human fungal infections","volume":"4","author":"Brown","year":"2012","journal-title":"Science Translational Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib87","doi-asserted-by":"crossref","first-page":"374","DOI":"10.1038\/s41577-018-0004-8","article-title":"C-type lectins in immunity and homeostasis","volume":"18","author":"Brown","year":"2018","journal-title":"Nature Reviews Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib88","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1097\/QCO.0000000000000408","article-title":"The evolving landscape of new diagnostic tests for invasive aspergillosis in hematology patients: strengths and weaknesses","volume":"30","author":"Buchheidt","year":"2017","journal-title":"Current Opinion in Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib89","doi-asserted-by":"crossref","first-page":"2116","DOI":"10.1093\/jac\/dkq279","article-title":"Azole antifungal resistance in Aspergillus fumigatus: 2008 and 2009","volume":"65","author":"Bueid","year":"2010","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib90","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1093\/jac\/dks451","article-title":"High-level expression of cyp51B in azole-resistant clinical Aspergillus fumigatus isolates","volume":"68","author":"Buied","year":"2013","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib91","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1093\/jac\/dkx354","article-title":"Isavuconazole susceptibility of clinical Aspergillus fumigatus isolates and feasibility of isavuconazole dose escalation to treat isolates with elevated MICs","volume":"73","author":"Buil","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib92","doi-asserted-by":"crossref","first-page":"103","DOI":"10.3390\/jof4030103","article-title":"Itraconazole, voriconazole, and posaconazole CLSI MIC distributions for wild-type and azole-resistant Aspergillus fumigatus isolates","volume":"4","author":"Buil","year":"2018","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib93","doi-asserted-by":"crossref","first-page":"2548","DOI":"10.1093\/jac\/dkx177","article-title":"In\u00a0vitro activity of the novel antifungal compound F901318 against difficult-to-treat Aspergillus isolates","volume":"72","author":"Buil","year":"2017","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib94","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01250-17","article-title":"Single-center evaluation of an agar-based screening for azole resistance in Aspergillus fumigatus by using VIPcheck","volume":"61","author":"Buil","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib95","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.mmcr.2017.03.005","article-title":"Successful treatment of azole-resistant invasive aspergillosis in a bottlenose dolphin with high-dose posaconazole","volume":"16","author":"Bunskoek","year":"2017","journal-title":"Medical Mycology Case Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib96","doi-asserted-by":"crossref","first-page":"1744","DOI":"10.3389\/fmicb.2018.01744","article-title":"Susceptibility testing of bacteria using MALDI-ToF mass spectrometry","volume":"9","author":"Burckhardt","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib97","doi-asserted-by":"crossref","first-page":"2740","DOI":"10.1002\/cncr.23109","article-title":"Liposomal amphotericin B in combination with caspofungin for invasive aspergillosis in patients with hematologic malignancies: a randomized pilot study (Combistrat trial)","volume":"110","author":"Caillot","year":"2007","journal-title":"Cancer"},{"key":"10.1016\/j.simyco.2021.100115_bib98","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1016\/j.tim.2015.09.008","article-title":"New and improved techniques for the study of pathogenic fungi","volume":"24","author":"Cairns","year":"2016","journal-title":"Trends in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib99","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1093\/cid\/ciu337","article-title":"Immune correlates of protection in human invasive aspergillosis","volume":"59","author":"Camargo","year":"2014","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib100","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0050034","article-title":"Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing","volume":"7","author":"Camps","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib101","doi-asserted-by":"crossref","first-page":"2674","DOI":"10.1128\/JCM.00335-12","article-title":"Molecular epidemiology of Aspergillus fumigatus isolates harboring the TR34\/L98H azole resistance mechanism","volume":"50","author":"Camps","year":"2012","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib102","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/AAC.05088-11","article-title":"Rapid induction of multiple resistance mechanisms in Aspergillus fumigatus during azole therapy: a case study and review of the literature","volume":"56","author":"Camps","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib103","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.02510-19","article-title":"Species distribution and comparison between EUCAST and gradient concentration strips methods for antifungal susceptibility testing of 112 Aspergillus section Nigri isolates","volume":"64","author":"Carrara","year":"2020","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib104","doi-asserted-by":"crossref","first-page":"4358","DOI":"10.1128\/JCM.42.9.4358-4360.2004","article-title":"Comparison of the Sensititre YeastOne colorimetric antifungal panel with a modified NCCLS M38-A method to determine the activity of voriconazole against clinical isolates of Aspergillus spp","volume":"42","author":"Castro","year":"2004","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib105","doi-asserted-by":"crossref","first-page":"736","DOI":"10.1093\/infdis\/jiq102","article-title":"The Y238X stop codon polymorphism in the human beta-glucan receptor dectin-1 and susceptibility to invasive aspergillosis","volume":"203","author":"Chai","year":"2011","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib106","doi-asserted-by":"crossref","first-page":"9367","DOI":"10.1073\/pnas.0709578105","article-title":"Drosophila melanogaster as a model host to dissect the immunopathogenesis of zygomycosis","volume":"105","author":"Chamilos","year":"2008","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"10.1016\/j.simyco.2021.100115_bib107","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1093\/cid\/cix687","article-title":"Call for action: Invasive fungal infections associated with ibrutinib and other small molecule kinase inhibitors targeting immune signaling pathways","volume":"66","author":"Chamilos","year":"2018","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib108","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1111\/j.1439-0507.2009.01695.x","article-title":"The utility of a nebulised intra-tracheal rat model of invasive pulmonary aspergillosis","volume":"52","author":"Chandenier","year":"2009","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib109","doi-asserted-by":"crossref","first-page":"E201","DOI":"10.1111\/tid.12127","article-title":"Primary hepatic aspergillosis following induction chemotherapy for acute leukemia","volume":"15","author":"Chasan","year":"2013","journal-title":"Transplant Infectious Disease"},{"key":"10.1016\/j.simyco.2021.100115_bib110","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.simyco.2016.10.001","article-title":"Aspergillus section Nidulantes (formerly Emericella): Polyphasic taxonomy, chemistry and biology","volume":"84","author":"Chen","year":"2016","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib111","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.simyco.2017.07.001","article-title":"Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food","volume":"88","author":"Chen","year":"2017","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib112","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/j.simyco.2016.11.001","article-title":"Polyphasic taxonomy of Aspergillus section Cervini","volume":"85","author":"Chen","year":"2016","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib113","doi-asserted-by":"crossref","first-page":"2620","DOI":"10.1172\/JCI137244","article-title":"Clinical and immunological features of severe and moderate coronavirus disease 2019","volume":"130","author":"Chen","year":"2020","journal-title":"Journal of Clinical Investigation"},{"key":"10.1016\/j.simyco.2021.100115_bib114","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/jac\/dkh507","article-title":"Mutations in the cyp51A gene and susceptibility to itraconazole in Aspergillus fumigatus serially isolated from a patient with lung aspergilloma","volume":"55","author":"Chen","year":"2005","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib115","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1016\/S0140-6736(20)30211-7","article-title":"Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study","volume":"395","author":"Chen","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.simyco.2021.100115_bib116","doi-asserted-by":"crossref","first-page":"3127","DOI":"10.3389\/fmicb.2019.03127","article-title":"Uncovering new mutations conferring azole resistance in the Aspergillus fumigatus cyp51A gene","volume":"10","author":"Chen","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib117","doi-asserted-by":"crossref","first-page":"5878","DOI":"10.1128\/AAC.01005-16","article-title":"Epidemiology and molecular characterizations of azole resistance in clinical and environmental Aspergillus fumigatus isolates from China","volume":"60","author":"Chen","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib118","doi-asserted-by":"crossref","first-page":"7148","DOI":"10.1128\/AAC.00887-15","article-title":"Emergence of TR46\/Y121F\/T289A in an Aspergillus fumigatus isolate from a Chinese patient","volume":"59","author":"Chen","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib119","doi-asserted-by":"crossref","first-page":"1174","DOI":"10.1111\/myc.13008","article-title":"Azole resistance in Aspergillus species in Southern Taiwan: An epidemiological surveillance study","volume":"62","author":"Chen","year":"2019","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib120","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1086\/341567","article-title":"Development of a murine model of cerebral aspergillosis","volume":"186","author":"Chiller","year":"2002","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib121","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1007\/BF00436221","article-title":"Bronchoalveolar lavage in an immunosuppressed rabbit model of invasive pulmonary aspergillosis","volume":"108","author":"Chilvers","year":"1989","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib122","doi-asserted-by":"crossref","first-page":"416","DOI":"10.1093\/mmy\/myx066","article-title":"Survey of laboratory practices for diagnosis of fungal infection in seven Asian countries: An Asia Fungal Working Group (AFWG) initiative","volume":"56","author":"Chindamporn","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib123","doi-asserted-by":"crossref","first-page":"e01610","DOI":"10.1128\/AAC.01610-18","article-title":"Microsatellite typing and resistance mechanism analysis of voriconazole-resistant Aspergillus flavus isolates in South Korean hospitals","volume":"63","author":"Choi","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib124","doi-asserted-by":"crossref","first-page":"868","DOI":"10.1128\/JCM.03216-14","article-title":"Validation of a new Aspergillus real-time PCR assay for direct detection of Aspergillus and azole resistance of Aspergillus fumigatus on bronchoalveolar lavage fluid","volume":"53","author":"Chong","year":"2015","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib125","doi-asserted-by":"crossref","first-page":"3528","DOI":"10.1093\/jac\/dkw323","article-title":"PCR-based detection of Aspergillus fumigatus Cyp51A mutations on bronchoalveolar lavage: a multicentre validation of the AsperGenius assay\u00ae in 201 patients with haematological disease suspected for invasive aspergillosis","volume":"71","author":"Chong","year":"2016","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib126","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1093\/mmy\/myv029","article-title":"Prospective evaluation of azole resistance in Aspergillus fumigatus clinical isolates in France","volume":"53","author":"Choukri","year":"2015","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib127","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1093\/jac\/dkr443","article-title":"Isolation of multiple-triazole-resistant Aspergillus fumigatus strains carrying the TR\/L98H mutations in the cyp51A gene in India","volume":"67","author":"Chowdhary","year":"2012","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib128","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0052871","article-title":"Clonal expansion and emergence of environmental multiple-triazole-resistant Aspergillus fumigatus strains carrying the TR34\/L98H mutations in the cyp51A gene in India","volume":"7","author":"Chowdhary","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib129","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1093\/jac\/dkt397","article-title":"Azole-resistant Aspergillus fumigatus with the environmental TR46\/Y121F\/T289A mutation in India","volume":"69","author":"Chowdhary","year":"2014","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib130","doi-asserted-by":"crossref","first-page":"428","DOI":"10.3389\/fmicb.2015.00428","article-title":"Prevalence and mechanism of triazole resistance in Aspergillus fumigatus in a referral chest hospital in Delhi, India and an update of the situation in Asia","volume":"6","author":"Chowdhary","year":"2015","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib131","doi-asserted-by":"crossref","first-page":"2979","DOI":"10.1093\/jac\/dku259","article-title":"Multi-azole-resistant Aspergillus fumigatus in the environment in Tanzania","volume":"69","author":"Chowdhary","year":"2014","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib132","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1007\/s11046-017-0223-8","article-title":"Proven invasive pulmonary aspergillosis in stem cell transplant recipient due to Aspergillus sublatus, a cryptic species of A.\u00a0nidulans","volume":"183","author":"Chrenkova","year":"2018","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib133","doi-asserted-by":"crossref","first-page":"509","DOI":"10.3109\/00365549709011864","article-title":"In\u00a0vitro susceptibility of respiratory isolates of Aspergillus species to itraconazole and amphotericin B. Acquired resistance to itraconazole","volume":"29","author":"Chryssanthou","year":"1997","journal-title":"Scandinavian Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib134","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004487","article-title":"ChIP-seq and in\u00a0vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence","volume":"10","author":"Chung","year":"2014","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib135","doi-asserted-by":"crossref","first-page":"336","DOI":"10.4049\/jimmunol.1502037","article-title":"Zinc and manganese chelation by neutrophil S100A8\/A9 (Calprotectin) limits extracellular Aspergillus fumigatus hyphal growth and corneal infection","volume":"196","author":"Clark","year":"2016","journal-title":"Journal of Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib136","doi-asserted-by":"crossref","first-page":"4439","DOI":"10.1128\/AAC.06015-11","article-title":"Experimental central nervous system aspergillosis therapy: efficacy, drug levels and localization, immunohistopathology, and toxicity","volume":"56","author":"Clemons","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib137","series-title":"Evaluate F901318 treatment of invasive fungal infections in patients lacking treatment options (FORMULA-OLS)","author":"ClinicalTrials.gov","year":"2020"},{"key":"10.1016\/j.simyco.2021.100115_bib138","series-title":"An open-label study of APX001 for treatment of patients with invasive mold infections caused by Aspergillus species or rare molds (AEGIS)","author":"ClinicalTrials.gov","year":"2020"},{"key":"10.1016\/j.simyco.2021.100115_bib139","series-title":"Reference method for broth dilution antifungal susceptibility testing of filamentous fungi; approved standard-second edition (CLSI Document M38-A2)","author":"CLSI","year":"2008"},{"key":"10.1016\/j.simyco.2021.100115_bib140","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1093\/femsre\/fuz015","article-title":"Recent trends in molecular diagnostics of yeast infections: from PCR to NGS","volume":"43","author":"Consortium OPATHY","year":"2019","journal-title":"FEMS Microbiology Reviews"},{"key":"10.1016\/j.simyco.2021.100115_bib141","doi-asserted-by":"crossref","first-page":"e405","DOI":"10.1016\/S1473-3099(19)30312-3","article-title":"Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium","volume":"19","author":"Cornely","year":"2019","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib142","doi-asserted-by":"crossref","first-page":"716","DOI":"10.1111\/myc.12960","article-title":"Defining breakthrough invasive fungal infection\u2013Position paper of the mycoses study group education and research consortium and the European Confederation of Medical Mycology","volume":"62","author":"Cornely","year":"2019","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib143","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1086\/514341","article-title":"Liposomal amphotericin B as initial therapy for invasive mold infection: a randomized trial comparing a high-loading dose regimen with standard dosing (AmBiLoad trial)","volume":"44","author":"Cornely","year":"2007","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib144","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1086\/505870","article-title":"Comparison of epidemiological, clinical, and biological features of invasive aspergillosis in neutropenic and nonneutropenic patients: a 6-year survey","volume":"43","author":"Cornillet","year":"2006","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib145","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1056\/NEJMoa1211161","article-title":"Genetic PTX3 deficiency and aspergillosis in stem-cell transplantation","volume":"370","author":"Cunha","year":"2014","journal-title":"New England Journal of Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib146","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1093\/cid\/cix944","article-title":"Toward the identification of a genetic risk signature for pulmonary aspergillosis in chronic obstructive pulmonary disease","volume":"66","author":"Cunha","year":"2018","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib147","doi-asserted-by":"crossref","first-page":"5394","DOI":"10.1182\/blood-2010-04-279307","article-title":"Dectin-1 Y238X polymorphism associates with susceptibility to invasive aspergillosis in hematopoietic transplantation through impairment of both recipient- and donor-dependent mechanisms of antifungal immunity","volume":"116","author":"Cunha","year":"2010","journal-title":"Blood"},{"key":"10.1016\/j.simyco.2021.100115_bib148","doi-asserted-by":"crossref","first-page":"1893","DOI":"10.1093\/cid\/civ679","article-title":"PTX3-based genetic testing for risk of aspergillosis after lung transplant","volume":"61","author":"Cunha","year":"2015","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib149","doi-asserted-by":"crossref","first-page":"4405","DOI":"10.1128\/AAC.48.11.4405-4413.2004","article-title":"In\u00a0vitro evolution of itraconazole resistance in Aspergillus fumigatus involves multiple mechanisms of resistance","volume":"48","author":"da Silva Ferreira","year":"2004","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib150","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1128\/EC.5.1.207-211.2006","article-title":"The akuB(KU80) mutant deficient for nonhomologous end joining is a powerful tool for analyzing pathogenicity in Aspergillus fumigatus","volume":"5","author":"da Silva Ferreira","year":"2006","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib151","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1007\/s00294-006-0073-2","article-title":"Transcriptome analysis of Aspergillus fumigatus exposed to voriconazole","volume":"50","author":"da Silva Ferreira","year":"2006","journal-title":"Current Genetics"},{"key":"10.1016\/j.simyco.2021.100115_bib152","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.02264-17","article-title":"Emergence of azole-resistant Aspergillus fumigatus from immunocompromised hosts in India","volume":"62","author":"Dabas","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib153","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1093\/jac\/47.3.333","article-title":"Acquired itraconazole resistance in Aspergillus fumigatus","volume":"47","author":"Dannaoui","year":"2001","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib154","doi-asserted-by":"crossref","first-page":"1087","DOI":"10.1099\/00222615-48-12-1087","article-title":"In-vivo itraconazole resistance of Aspergillus fumigatus in systemic murine aspergillosis. EBGA Network. European research group on biotypes and genotypes of Aspergillus fumigatus","volume":"48","author":"Dannaoui","year":"1999","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib155","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1099\/0022-1317-49-7-601","article-title":"Amphotericin B resistance of Aspergillus terreus in a murine model of disseminated aspergillosis","volume":"49","author":"Dannaoui","year":"2000","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib156","doi-asserted-by":"crossref","first-page":"3210","DOI":"10.1128\/JCM.01032-17","article-title":"Molecular diagnosis of invasive aspergillosis and detection of azole resistance by a newly commercialized PCR kit","volume":"55","author":"Dannaoui","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib157","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1093\/jac\/44.4.553","article-title":"In-vitro susceptibility of Aspergillus spp. isolates to amphotericin B and itraconazole","volume":"44","author":"Dannaoui","year":"1999","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib158","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1097\/01.APO.0000617928.43993.7e","article-title":"Aspergillus endophthalmitis: Clinical presentations and factors determining outcomes","volume":"9","author":"Dave","year":"2020","journal-title":"Asia-Pacific Journal of Ophthalmology"},{"key":"10.1016\/j.simyco.2021.100115_bib159","doi-asserted-by":"crossref","first-page":"2479","DOI":"10.1128\/JCM.00224-12","article-title":"Use of matrix-assisted laser desorption ionization-time of flight mass spectrometry for caspofungin susceptibility testing of Candida and Aspergillus species","volume":"50","author":"De Carolis","year":"2012","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib160","doi-asserted-by":"crossref","first-page":"377","DOI":"10.3389\/fcimb.2018.00377","article-title":"Genotyping of Aspergillus fumigatus in formalin-fixed paraffin-embedded tissues and serum samples from patients with invasive aspergillosis","volume":"8","author":"de Groot","year":"2018","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib161","doi-asserted-by":"crossref","first-page":"82","DOI":"10.3389\/fcimb.2019.00082","article-title":"Microsatellite stability in STR analysis Aspergillus fumigatus depends on number of repeat units","volume":"9","author":"de Groot","year":"2019","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib162","article-title":"Galactomannan detection in broncho-alveolar lavage fluid for invasive aspergillosis in immunocompromised patients","volume":"5","author":"de Heer","year":"2019","journal-title":"The Cochrane Database of Systematic Reviews"},{"key":"10.1016\/j.simyco.2021.100115_bib163","doi-asserted-by":"crossref","first-page":"528","DOI":"10.1016\/j.mimet.2007.06.009","article-title":"Retrotransposon insertion-site context (RISC) typing: a novel typing method for Aspergillus fumigatus and a convenient PCR alternative to restriction fragment length polymorphism analysis","volume":"70","author":"de Ruiter","year":"2007","journal-title":"Journal of Microbiological Methods"},{"key":"10.1016\/j.simyco.2021.100115_bib164","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1111\/j.1469-0691.2008.02656.x","article-title":"Interlaboratory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept","volume":"15","author":"de Valk","year":"2009","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib165","doi-asserted-by":"crossref","first-page":"4112","DOI":"10.1128\/JCM.43.8.4112-4120.2005","article-title":"Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates","volume":"43","author":"de Valk","year":"2005","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib166","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1007\/s12281-016-0255-4","article-title":"Therapeutic drug monitoring of posaconazole: an update","volume":"10","author":"Dekkers","year":"2016","journal-title":"Current Fungal Infection Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib167","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1016\/j.drup.2015.10.001","article-title":"Defining the frontiers between antifungal resistance, tolerance and the concept of persistence","volume":"23","author":"Delarze","year":"2015","journal-title":"Drug Resistance Updates"},{"key":"10.1016\/j.simyco.2021.100115_bib168","doi-asserted-by":"crossref","first-page":"19","DOI":"10.3389\/fcimb.2019.00019","article-title":"Investigating antifungal susceptibility in Candida species with MALDI-TOF MS-based assays","volume":"9","author":"Delavy","year":"2019","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib169","series-title":"20th Congress of the International Society for Human and Animal Mycology, Amsterdam, The Netherlands: Abstract no: S6.6c","article-title":"First report of azole-resistant Aspergillus fumigatus harboring TR34\/L98H and M220R in Brazil","author":"Denardi","year":"2018"},{"key":"10.1016\/j.simyco.2021.100115_bib170","doi-asserted-by":"crossref","first-page":"e109","DOI":"10.1038\/emi.2017.97","article-title":"Triazole phenotypes and genotypic characterization of clinical Aspergillus fumigatus isolates in China","volume":"6","author":"Deng","year":"2017","journal-title":"Emerging Microbes & Infections"},{"key":"10.1016\/j.simyco.2021.100115_bib171","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1016\/j.jmoldx.2017.12.005","article-title":"Evaluation of two commercial real-time PCR kits for Aspergillus DNA detection in bronchoalveolar lavage fluid in patients with invasive pulmonary aspergillosis","volume":"20","author":"Denis","year":"2018","journal-title":"Journal of Molecular Diagnostics"},{"key":"10.1016\/j.simyco.2021.100115_bib172","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1183\/13993003.00583-2015","article-title":"Chronic pulmonary aspergillosis: rationale and clinical guidelines for diagnosis and management","volume":"47","author":"Denning","year":"2016","journal-title":"European Respiratory Journal"},{"key":"10.1016\/j.simyco.2021.100115_bib173","doi-asserted-by":"crossref","first-page":"e357","DOI":"10.1016\/S1473-3099(17)30309-2","article-title":"Pulmonary and sinus fungal diseases in non-immunocompromised patients","volume":"17","author":"Denning","year":"2017","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib174","doi-asserted-by":"crossref","DOI":"10.3201\/eid2408.171312","article-title":"Case definition of chronic pulmonary aspergillosis in resource-constrained settings","volume":"24","author":"Denning","year":"2018","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib175","doi-asserted-by":"crossref","first-page":"1123","DOI":"10.1093\/cid\/cir179","article-title":"High-frequency triazole resistance found in nonculturable Aspergillus fumigatus from lungs of patients with chronic fungal disease","volume":"52","author":"Denning","year":"2011","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib176","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.2217\/fmb.11.118","article-title":"Azole resistance in Aspergillus: a growing public health menace","volume":"6","author":"Denning","year":"2011","journal-title":"Future Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib177","doi-asserted-by":"crossref","first-page":"361","DOI":"10.3109\/13693786.2012.738312","article-title":"Global burden of allergic bronchopulmonary aspergillosis with asthma and its complication chronic pulmonary aspergillosis in adults","volume":"51","author":"Denning","year":"2013","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib178","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1093\/jac\/40.3.401","article-title":"Correlation between in-vitro susceptibility testing to itraconazole and in-vivo outcome of Aspergillus fumigatus infection","volume":"40","author":"Denning","year":"1997","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib179","doi-asserted-by":"crossref","first-page":"1364","DOI":"10.1128\/AAC.41.6.1364","article-title":"Itraconazole resistance in Aspergillus fumigatus","volume":"41","author":"Denning","year":"1997","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib180","doi-asserted-by":"crossref","first-page":"841","DOI":"10.3389\/fmicb.2017.00841","article-title":"Rodent models of invasive aspergillosis due to Aspergillus fumigatus: Still a long path toward standardization","volume":"8","author":"Desoubeaux","year":"2017","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib181","first-page":"109","article-title":"Animal models of aspergillosis","volume":"68","author":"Desoubeaux","year":"2018","journal-title":"Comparative Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib182","doi-asserted-by":"crossref","first-page":"92","DOI":"10.3389\/fmicb.2017.00092","article-title":"Regulation of sterol biosynthesis in the human fungal pathogen Aspergillus fumigatus: Opportunities for therapeutic development","volume":"8","author":"Dhingra","year":"2017","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib183","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1017\/ice.2016.220","article-title":"A\u00a0pseudo-outbreak of aspergillosis at a tertiary care hospital: Thinking beyond the infection control risk assessment","volume":"38","author":"Doll","year":"2017","journal-title":"Infection Control and Hospital Epidemiology"},{"key":"10.1016\/j.simyco.2021.100115_bib184","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1093\/cid\/ciz1008","article-title":"Revision and Update of the Consensus Definitions of Invasive Fungal Disease From the European Organization for Research and Treatment of Cancer and the Mycoses Study Group Education and Research Consortium","volume":"71","author":"Donnelly","year":"2020","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib185","doi-asserted-by":"crossref","first-page":"e00416","DOI":"10.1128\/mSphere.00416-19","article-title":"The Aspergillus fumigatus mismatch repair MSH2 homolog is important for virulence and azole resistance","volume":"4","author":"Dos Reis","year":"2019","journal-title":"mSphere"},{"key":"10.1016\/j.simyco.2021.100115_bib186","doi-asserted-by":"crossref","first-page":"459","DOI":"10.3389\/fgene.2020.00459","article-title":"Genomic and phenotypic heterogeneity of clinical isolates of the human pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis","volume":"11","author":"Dos Santos","year":"2020","journal-title":"Frontiers in Genetics"},{"key":"10.1016\/j.simyco.2021.100115_bib187","doi-asserted-by":"crossref","first-page":"e00156","DOI":"10.1128\/mSphere.00156-20","article-title":"Diversity of secondary metabolism in Aspergillus nidulans clinical isolates","volume":"5","author":"Drott","year":"2020","journal-title":"mSphere"},{"key":"10.1016\/j.simyco.2021.100115_bib188","doi-asserted-by":"crossref","first-page":"e00231","DOI":"10.1128\/AAC.00231-18","article-title":"Effect of the novel antifungal drug F901318 (Olorofim) on growth and viability of Aspergillus fumigatus","volume":"62","author":"du Pr\u00e9","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib189","doi-asserted-by":"crossref","first-page":"1696","DOI":"10.1093\/cid\/ciu673","article-title":"Serum galactomannan-based early detection of invasive aspergillosis in hematology patients receiving effective antimold prophylaxis","volume":"59","author":"Duarte","year":"2014","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib190","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1128\/CMR.00095-16","article-title":"Molecular tools for the detection and deduction of azole antifungal drug resistance phenotypes in Aspergillus species","volume":"30","author":"Dudakova","year":"2017","journal-title":"Clinical Microbiology Reviews"},{"key":"10.1016\/j.simyco.2021.100115_bib191","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1093\/mmy\/myu019","article-title":"Serum and urine galactomannan testing for screening in patients with hematological malignancies","volume":"52","author":"Duettmann","year":"2014","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib192","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1093\/mmy\/myaa078","article-title":"Pulmonary aspergillosis in critically ill patients with Coronavirus Disease 2019 (COVID-19)","volume":"59","author":"Dupont","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib193","doi-asserted-by":"crossref","first-page":"18","DOI":"10.3390\/jof6010018","article-title":"Blood Aspergillus PCR: The Good, the Bad, and the Ugly","volume":"6","author":"Egger","year":"2020","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib194","first-page":"528","article-title":"Galactomannan testing and Aspergillus PCR in same-day bronchoalveolar lavage and blood samples for diagnosis of invasive aspergillosis","volume":"55","author":"Eigl","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib195","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1186\/s13054-015-0905-x","article-title":"Multicenter evaluation of a lateral-flow device test for diagnosing invasive pulmonary aspergillosis in ICU patients","volume":"19","author":"Eigl","year":"2015","journal-title":"Critical Care"},{"key":"10.1016\/j.simyco.2021.100115_bib196","doi-asserted-by":"crossref","first-page":"1432","DOI":"10.1128\/EC.00055-10","article-title":"Role of Aspergillus fumigatus DvrA in host cell interactions and virulence","volume":"9","author":"Ejzykowicz","year":"2010","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib197","doi-asserted-by":"crossref","first-page":"4656","DOI":"10.1128\/AAC.00597-13","article-title":"Amphotericin B- and voriconazole-echinocandin combinations against Aspergillus spp.: Effect of serum on inhibitory and fungicidal interactions","volume":"57","author":"Elefanti","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib198","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/j.jcf.2018.11.012","article-title":"Prevalence and diversity of filamentous fungi in the airways of cystic fibrosis patients \u2013 A Dutch, multicentre study","volume":"18","author":"Engel","year":"2019","journal-title":"Journal of Cystic Fibrosis"},{"key":"10.1016\/j.simyco.2021.100115_bib199","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1128\/JCM.02037-16","article-title":"Genotyping of Aspergillus fumigatus reveals compartmentalization of genotypes in disseminated disease after invasive pulmonary aspergillosis","volume":"55","author":"Escribano","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib200","doi-asserted-by":"crossref","first-page":"667","DOI":"10.1128\/JCM.02636-14","article-title":"Microsatellite (STRAf) genotyping cannot differentiate between invasive and colonizing Aspergillus fumigatus isolates","volume":"53","author":"Escribano","year":"2015","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib201","doi-asserted-by":"crossref","first-page":"2815","DOI":"10.1128\/AAC.02487-12","article-title":"Is azole resistance in Aspergillus fumigatus a problem in Spain?","volume":"57","author":"Escribano","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib202","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1007\/s12281-012-0125-7","article-title":"EUCAST and CLSI: Working together towards a harmonized method for antifungal susceptibility testing","volume":"7","author":"Espinel-Ingroff","year":"2013","journal-title":"Current Fungal Infection Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib203","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/j.riam.2016.04.001","article-title":"The role of epidemiological cutoff values (ECVs\/ECOFFs) in antifungal susceptibility testing and interpretation for uncommon yeasts and moulds","volume":"33","author":"Espinel-Ingroff","year":"2016","journal-title":"Revista Iberoamericana de Micologia"},{"key":"10.1016\/j.simyco.2021.100115_bib204","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.00338-20","article-title":"Characterization of the efflux capability and substrate specificity of Aspergillus fumigatus PDR5-like ABC transporters expressed in Saccharomyces cerevisiae","volume":"11","author":"Esquivel","year":"2020","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib205","series-title":"European Committee for Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs for antifungal agents","author":"EUCAST","year":"2020"},{"key":"10.1016\/j.simyco.2021.100115_bib206","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1128\/JCM.33.2.471-473.1995","article-title":"First reported case of Aspergillus granulosus infection in a cardiac transplant patient","volume":"33","author":"Fakih","year":"1995","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib207","doi-asserted-by":"crossref","first-page":"e01578","DOI":"10.1128\/AAC.01578-19","article-title":"Comparison of two typing methods for characterization of azole resistance in Aspergillus fumigatus from potting soil samples in a Chinese Hospital","volume":"64","author":"Fan","year":"2020","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib208","doi-asserted-by":"crossref","first-page":"5360","DOI":"10.1073\/pnas.1015476108","article-title":"TNF-alpha from inflammatory dendritic cells (DCs) regulates lung IL-17A\/IL-5 levels and neutrophilia versus eosinophilia during persistent fungal infection","volume":"108","author":"Fei","year":"2011","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"10.1016\/j.simyco.2021.100115_bib209","doi-asserted-by":"crossref","first-page":"1760","DOI":"10.1056\/NEJMoa0901053","article-title":"Human dectin-1 deficiency and mucocutaneous fungal infections","volume":"361","author":"Ferwerda","year":"2009","journal-title":"New England Journal of Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib210","doi-asserted-by":"crossref","first-page":"e129","DOI":"10.1371\/journal.ppat.0020129","article-title":"Fungal invasion of normally non-phagocytic host cells","volume":"2","author":"Filler","year":"2006","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib211","doi-asserted-by":"crossref","first-page":"2693","DOI":"10.1182\/blood-2016-10-743294","article-title":"Validation of single nucleotide polymorphisms in invasive aspergillosis following hematopoietic cell transplantation","volume":"129","author":"Fisher","year":"2017","journal-title":"Blood"},{"key":"10.1016\/j.simyco.2021.100115_bib212","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1016\/j.tim.2015.09.006","article-title":"Pentraxins and collectins: Friend or foe during pathogen invasion?","volume":"23","author":"Foo","year":"2015","journal-title":"Trends in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib213","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1016\/j.ijantimicag.2015.07.007","article-title":"In\u00a0vivo efficacy of voriconazole and posaconazole therapy in a novel invertebrate model of Aspergillus fumigatus infection","volume":"46","author":"Forastiero","year":"2015","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib214","doi-asserted-by":"crossref","first-page":"1486","DOI":"10.1093\/jac\/dkt075","article-title":"The cdr1B efflux transporter is associated with non-cyp51a-mediated itraconazole resistance in Aspergillus fumigatus","volume":"68","author":"Fraczek","year":"2013","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib215","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1186\/gb-2004-5-11-248","article-title":"The 3-hydroxy-3-methylglutaryl coenzyme-A (HMG-CoA) reductases","volume":"5","author":"Friesen","year":"2004","journal-title":"Genome Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib216","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.simyco.2018.06.001","article-title":"Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins","volume":"93","author":"Frisvad","year":"2019","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib217","doi-asserted-by":"crossref","first-page":"1485","DOI":"10.3389\/fmicb.2015.01485","article-title":"Extrolites of Aspergillus fumigatus and other pathogenic species in Aspergillus section Fumigati","volume":"6","author":"Frisvad","year":"2016","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib218","series-title":"Modern concepts in Penicillium and Aspergillus classification","first-page":"201","article-title":"Chemotaxonomy and morphology of Aspergillus fumigatus and related taxa","author":"Frisvad","year":"1990"},{"key":"10.1016\/j.simyco.2021.100115_bib219","doi-asserted-by":"crossref","first-page":"2894","DOI":"10.1093\/jac\/dkv177","article-title":"High prevalence of azole resistance in Aspergillus fumigatus isolates from high-risk patients","volume":"70","author":"Fuhren","year":"2015","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib220","doi-asserted-by":"crossref","first-page":"1268","DOI":"10.1021\/np50098a010","article-title":"Structure of fischerin, a new toxic metabolite from an ascomycete, Neosartorya fischeri var. fischeri","volume":"56","author":"Fujimoto","year":"1993","journal-title":"Journal of Natural Products"},{"key":"10.1016\/j.simyco.2021.100115_bib221","series-title":"Fungiplex\u00ae Aspergillus Azole-R IVD PCR","author":"Fungiplex","year":"2020"},{"key":"10.1016\/j.simyco.2021.100115_bib222","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1038\/s41467-019-14191-1","article-title":"The negative cofactor 2 complex is a key regulator of drug resistance in Aspergillus fumigatus","volume":"11","author":"Furukawa","year":"2020","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib223","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1111\/1469-0691.12389","article-title":"Osteomyelitis caused by Aspergillus species: a review of 310 reported cases","volume":"20","author":"Gabrielli","year":"2014","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib224","doi-asserted-by":"crossref","first-page":"S219","DOI":"10.1093\/mmy\/myy076","article-title":"Pathophysiological aspects of Aspergillus colonization in disease","volume":"57","author":"Gago","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib225","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1038\/nature04341","article-title":"Sequencing of Aspergillus nidulans and comparative analysis with A.\u00a0fumigatus and A.\u00a0oryzae","volume":"438","author":"Galagan","year":"2005","journal-title":"Nature"},{"key":"10.1016\/j.simyco.2021.100115_bib226","series-title":"Advances in Penicillium and Aspergillus Systematics","first-page":"55","article-title":"Infrageneric taxa of Aspergillus","author":"Gams","year":"1985"},{"key":"10.1016\/j.simyco.2021.100115_bib227","doi-asserted-by":"crossref","first-page":"100971","DOI":"10.1016\/j.mycmed.2020.100971","article-title":"Invasive fungal diseases during COVID-19: We should be prepared","volume":"30","author":"Gangneux","year":"2020","journal-title":"Journal de Mycologie Medicale"},{"key":"10.1016\/j.simyco.2021.100115_bib228","doi-asserted-by":"crossref","first-page":"683","DOI":"10.3109\/13693786.2013.770609","article-title":"CSP typing of Chinese Aspergillus fumigatus isolates: identification of additional CSP types","volume":"51","author":"Gao","year":"2013","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib229","doi-asserted-by":"crossref","first-page":"1200","DOI":"10.1128\/JCM.02330-07","article-title":"Rapid detection of triazole antifungal resistance in Aspergillus fumigatus","volume":"46","author":"Garc\u00eda-Effron","year":"2008","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib230","first-page":"222","article-title":"Onychomycosis caused by Aspergillus sclerotiorum","volume":"11","author":"Garc\u00eda-Martos","year":"2001","journal-title":"Journal de Mycologie Medicale"},{"key":"10.1016\/j.simyco.2021.100115_bib231","doi-asserted-by":"crossref","first-page":"e00241","DOI":"10.1128\/AAC.00241-18","article-title":"Insight into the significance of Aspergillus fumigatus cyp51A polymorphisms","volume":"62","author":"Garcia-Rubio","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib232","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1007\/s40265-017-0714-4","article-title":"Triazole resistance in Aspergillus species: An emerging problem","volume":"77","author":"Garcia-Rubio","year":"2017","journal-title":"Drugs"},{"key":"10.1016\/j.simyco.2021.100115_bib233","doi-asserted-by":"crossref","first-page":"1626","DOI":"10.3389\/fmicb.2018.01626","article-title":"Comparison of two highly discriminatory typing methods to analyze Aspergillus fumigatus azole resistance","volume":"9","author":"Garcia-Rubio","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib234","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0163869","article-title":"A\u00a0new Aspergillus fumigatus typing method based on hypervariable Tandem Repeats located within Exons of Surface Protein coding genes (TRESP)","volume":"11","author":"Garcia-Rubio","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib235","doi-asserted-by":"crossref","first-page":"363","DOI":"10.3390\/genes9070363","article-title":"Genome-wide comparative analysis of Aspergillus fumigatus strains: The reference genome as a matter of concern","volume":"9","author":"Garcia-Rubio","year":"2018","journal-title":"Genes (Basel)"},{"key":"10.1016\/j.simyco.2021.100115_bib236","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1038\/nature01195","article-title":"Non-redundant role of the long pentraxin PTX3 in anti-fungal innate immune response","volume":"420","author":"Garlanda","year":"2002","journal-title":"Nature"},{"key":"10.1016\/j.simyco.2021.100115_bib237","doi-asserted-by":"crossref","first-page":"e01713","DOI":"10.1128\/AAC.01713-18","article-title":"APX001 is effective in the treatment of murine invasive pulmonary aspergillosis","volume":"63","author":"Gebremariam","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib238","doi-asserted-by":"crossref","first-page":"3098","DOI":"10.1038\/s41467-018-05497-7","article-title":"Azole-induced cell wall carbohydrate patches kill Aspergillus fumigatus","volume":"9","author":"Gei\u03b2el","year":"2018","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib239","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/j.mmcr.2020.06.006","article-title":"Recovery of a triazole-resistant Aspergillus fumigatus in respiratory specimen of COVID-19 patient in ICU \u2013 A case report","volume":"31","author":"Ghelfenstein-Ferreira","year":"2021","journal-title":"Medical Mycology Case Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib240","doi-asserted-by":"crossref","first-page":"1955","DOI":"10.1182\/blood-2017-11-818286","article-title":"Early-onset invasive aspergillosis and other fungal infections in patients treated with ibrutinib","volume":"131","author":"Ghez","year":"2018","journal-title":"Blood"},{"key":"10.1016\/j.simyco.2021.100115_bib241","first-page":"323","article-title":"A\u00a0fucose specific lectin from Aspergillus flavus induced interleukin-8 expression is mediated by mitogen activated protein kinase p38","volume":"55","author":"Ghufran","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib242","doi-asserted-by":"crossref","first-page":"2030","DOI":"10.1128\/JCM.00254-17","volume":"55","author":"Gitman","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib243","doi-asserted-by":"crossref","DOI":"10.1093\/cid\/ciaa230","article-title":"Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study","author":"Glampedakis","year":"2021","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib244","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1093\/mmy\/myt022","article-title":"An invertebrate model to evaluate virulence in Aspergillus fumigatus: the role of azole resistance","volume":"52","author":"Gomez-Lopez","year":"2014","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib245","doi-asserted-by":"crossref","first-page":"2362","DOI":"10.3389\/fmicb.2017.02362","article-title":"Evaluation of bronchoalveolar lavage fluid cytokines as biomarkers for invasive pulmonary aspergillosis in at-risk patients","volume":"8","author":"Gon\u00e7alves","year":"2017","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib246","doi-asserted-by":"crossref","first-page":"2047","DOI":"10.1093\/jac\/dkz121","article-title":"Azole resistance and cyp51A mutation screening in Aspergillus fumigatus in Mexico","volume":"74","author":"Gonzalez-Lara","year":"2019","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib247","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1002145","article-title":"In\u00a0vivo hypoxia and a fungal alcohol dehydrogenase influence the pathogenesis of invasive pulmonary aspergillosis","volume":"7","author":"Grahl","year":"2011","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib248","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1007\/978-1-61779-539-8_8","article-title":"Targeted gene deletion in Aspergillus fumigatus using the hygromycin-resistance split-marker approach","volume":"845","author":"Gravelat","year":"2012","journal-title":"Methods in Molecular Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib249","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1016\/j.fgb.2005.10.001","article-title":"Analysis of the Aspergillus nidulans thaumatin-like cetA gene and evidence for transcriptional repression of pyr4 expression in the cetA-disrupted strain","volume":"43","author":"Greenstein","year":"2006","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib250","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1080\/14737159.2018.1487292","article-title":"The challenge of diagnostic metagenomics","volume":"18","author":"Greninger","year":"2018","journal-title":"Expert Review of Molecular Diagnostics"},{"key":"10.1016\/j.simyco.2021.100115_bib251","doi-asserted-by":"crossref","first-page":"2636","DOI":"10.1038\/s41467-018-04912-3","article-title":"Genetic deficiency of NOD2 confers resistance to invasive aspergillosis","volume":"9","author":"Gresnigt","year":"2018","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib252","doi-asserted-by":"crossref","DOI":"10.1111\/tid.12751","article-title":"Drug-drug interactions between triazole antifungal agents used to treat invasive aspergillosis and immunosuppressants metabolized by cytochrome P450 3A4","volume":"19","author":"Groll","year":"2017","journal-title":"Transplant Infectious Disease"},{"key":"10.1016\/j.simyco.2021.100115_bib253","article-title":"Sterol biosynthesis and azole tolerance is governed by the opposing actions of SrbA and the CCAAT binding complex","volume":"12","author":"Gsaller","year":"2016","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib254","doi-asserted-by":"crossref","first-page":"531","DOI":"10.3389\/fmicb.2018.00531","article-title":"Performance of molecular approaches for Aspergillus detection and azole resistance surveillance in cystic fibrosis","volume":"9","author":"Guegan","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib255","doi-asserted-by":"crossref","first-page":"3498","DOI":"10.1128\/JCM.01159-11","article-title":"Molecular epidemiology of Aspergillus fumigatus: an in-depth genotypic analysis of isolates involved in an outbreak of invasive aspergillosis","volume":"49","author":"Guinea","year":"2011","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib256","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/j.diagmicrobio.2006.03.004","article-title":"Comparison of Sensititre YeastOne with the NCCLS M38-A microdilution method to determine the activity of amphotericin B, voriconazole, and itraconazole against clinical isolates of Aspergillus fumigatus","volume":"56","author":"Guinea","year":"2006","journal-title":"Diagnostic Microbiology and Infectious Disease"},{"key":"10.1016\/j.simyco.2021.100115_bib257","doi-asserted-by":"crossref","first-page":"1396","DOI":"10.1128\/AAC.01512-07","article-title":"In\u00a0vitro antifungal activities of isavuconazole (BAL 4815), voriconazole, and fluconazole against 1,007 isolates of zygomycete, Candida, Aspergillus, Fusarium, and Scedosporium species","volume":"52","author":"Guinea","year":"2008","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib258","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1111\/j.1469-0691.2009.03015.x","article-title":"Pulmonary aspergillosis in patients with chronic obstructive pulmonary disease: incidence, risk factors, and outcome","volume":"16","author":"Guinea","year":"2010","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib259","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1016\/j.cmi.2018.09.008","article-title":"How to: EUCAST recommendations on the screening procedure E.Def 10.1 for the detection of azole resistance in Aspergillus fumigatus isolates using four-well azole-containing agar plates","volume":"25","author":"Guinea","year":"2019","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib260","doi-asserted-by":"crossref","first-page":"728","DOI":"10.1016\/S1010-7940(02)00467-0","article-title":"Invasive pulmonary aspergillosis: effects of early resection in a neutropenic rat model","volume":"22","author":"Habicht","year":"2002","journal-title":"European Journal of Cardio-Thoracic Surgery"},{"key":"10.1016\/j.simyco.2021.100115_bib261","doi-asserted-by":"crossref","first-page":"1889","DOI":"10.3201\/eid2410.180730","article-title":"Non-cyp51A azole-resistant Aspergillus fumigatus isolates with mutation in HMG-CoA reductase","volume":"24","author":"Hagiwara","year":"2018","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib262","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1006096","article-title":"A\u00a0novel Zn2-Cys6 transcription factor AtrR plays a key role in an azole resistance mechanism of Aspergillus fumigatus by co-regulating cyp51A and cdr1B expressions","volume":"13","author":"Hagiwara","year":"2017","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib263","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1016\/j.jiac.2016.01.015","article-title":"Multi-azole resistant Aspergillus fumigatus harboring Cyp51A TR46\/Y121F\/T289A isolated in Japan","volume":"22","author":"Hagiwara","year":"2016","journal-title":"Journal of Infection and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib264","doi-asserted-by":"crossref","first-page":"4202","DOI":"10.1128\/JCM.01105-14","article-title":"Whole-genome comparison of Aspergillus fumigatus strains serially isolated from patients with aspergillosis","volume":"52","author":"Hagiwara","year":"2014","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib265","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1007\/s11046-018-0299-9","article-title":"The molecular identification and antifungal susceptibilities of Aspergillus species causing otomycosis in Tochigi, Japan","volume":"184","author":"Hagiwara","year":"2019","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib266","doi-asserted-by":"crossref","first-page":"577","DOI":"10.3201\/eid2503.180297","article-title":"In\u00a0vivo selection of a unique tandem repeat mediated azole resistance mechanism (TR120) in Aspergillus fumigatus cyp51A, Denmark","volume":"25","author":"Hare","year":"2019","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib267","doi-asserted-by":"crossref","first-page":"23916","DOI":"10.1074\/jbc.M115.677310","article-title":"Structure-functional characterization of cytochrome P450 sterol 14 alpha-Demethylase (CYP51B) from Aspergillus fumigatus and molecular basis for the development of antifungal drugs","volume":"290","author":"Hargrove","year":"2015","journal-title":"Journal of Biological Chemistry"},{"key":"10.1016\/j.simyco.2021.100115_bib268","doi-asserted-by":"crossref","first-page":"949","DOI":"10.1111\/j.1346-8138.2004.tb00635.x","article-title":"A\u00a0case of otomycosis caused by Aspergillus sclerotiorum","volume":"31","author":"Harima","year":"2004","journal-title":"Journal of Dermatology"},{"key":"10.1016\/j.simyco.2021.100115_bib269","doi-asserted-by":"crossref","first-page":"6313","DOI":"10.1128\/AEM.00882-10","article-title":"Validation of a self-excising marker in the human pathogen Aspergillus fumigatus by employing the beta-rec\/six site-specific recombination system","volume":"76","author":"Hartmann","year":"2010","journal-title":"Applied and Environmental Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib270","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1093\/cid\/cix749","article-title":"Pentraxin 3 gene polymorphisms and pulmonary aspergillosis in chronic obstructive pulmonary disease patients","volume":"66","author":"He","year":"2018","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib271","doi-asserted-by":"crossref","first-page":"105","DOI":"10.3390\/jof4030105","article-title":"Fungal resistance to echinocandins and the MDR phenomenon in Candida glabrata","volume":"4","author":"Healey","year":"2018","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib272","doi-asserted-by":"crossref","first-page":"11128","DOI":"10.1038\/ncomms11128","article-title":"Prevalent mutator genotype identified in fungal pathogen Candida glabrata promotes multi-drug resistance","volume":"7","author":"Healey","year":"2016","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib273","doi-asserted-by":"crossref","first-page":"1677","DOI":"10.1099\/mic.0.2007\/007641-0","article-title":"Aspergillus flavus: human pathogen, allergen and mycotoxin producer","volume":"153","author":"Hedayati","year":"2007","journal-title":"Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib274","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1016\/j.micpath.2019.02.009","article-title":"Fungal epidemiology in cystic fibrosis patients with a special focus on Scedosporium species complex","volume":"129","author":"Hedayati","year":"2019","journal-title":"Microbial Pathogenesis"},{"key":"10.1016\/j.simyco.2021.100115_bib275","doi-asserted-by":"crossref","first-page":"818","DOI":"10.1111\/myc.12679","article-title":"Levels of interleukin (IL)-6 and IL-8 are elevated in serum and bronchoalveolar lavage fluid of haematological patients with invasive pulmonary aspergillosis","volume":"60","author":"Heldt","year":"2017","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib276","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1016\/j.jinf.2018.05.001","article-title":"Diagnosis of invasive aspergillosis in hematological malignancy patients: Performance of cytokines, Asp LFD, and Aspergillus PCR in same day blood and bronchoalveolar lavage samples","volume":"77","author":"Heldt","year":"2018","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib277","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.2165\/00003088-200645110-00004","article-title":"Population pharmacokinetics of itraconazole and its active metabolite hydroxy-itraconazole in paediatric cystic fibrosis and bone marrow transplant patients","volume":"45","author":"Hennig","year":"2006","journal-title":"Clinical Pharmacokinetics"},{"key":"10.1016\/j.simyco.2021.100115_bib278","doi-asserted-by":"crossref","first-page":"1932","DOI":"10.1093\/infdis\/jit103","article-title":"Chloroquine modulates the fungal immune response in phagocytic cells from patients with chronic granulomatous disease","volume":"207","author":"Henriet","year":"2013","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib279","doi-asserted-by":"crossref","first-page":"216","DOI":"10.1093\/cid\/cix297","article-title":"Changes in in\u00a0vitro susceptibility patterns of Aspergillus to triazoles and correlation with aspergillosis outcome in a tertiary care cancer center, 1999\u20132015","volume":"65","author":"Heo","year":"2017","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib280","doi-asserted-by":"crossref","first-page":"408","DOI":"10.1056\/NEJMoa020191","article-title":"Voriconazole versus amphotericin B for primary therapy of invasive aspergillosis","volume":"347","author":"Herbrecht","year":"2002","journal-title":"New England Journal of Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib281","doi-asserted-by":"crossref","first-page":"S133","DOI":"10.1093\/clinids\/22.Supplement_2.S133","article-title":"Lipid formulations of amphotericin B: recent progress and future directions","volume":"22","author":"Hiemenz","year":"1996","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib282","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1080\/13693780802545600","article-title":"Multiple-azole-resistant Aspergillus fumigatus osteomyelitis in a patient with chronic granulomatous disease successfully treated with long-term oral posaconazole and surgery","volume":"47","author":"Hodiamont","year":"2009","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib283","article-title":"Invasive fungal disease complicating COVID-19: when it rains it pours","author":"Hoenigl","year":"2021","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib284","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.ijantimicag.2014.03.013","article-title":"Impact of structured personal on-site patient education on low posaconazole plasma concentrations in patients with haematological malignancies","volume":"44","author":"Hoenigl","year":"2014","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib285","doi-asserted-by":"crossref","first-page":"3262","DOI":"10.1128\/AAC.00251-13","article-title":"Potential factors for inadequate voriconazole plasma concentrations in intensive care unit patients and patients with hematological malignancies","volume":"57","author":"Hoenigl","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib286","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1111\/myc.12704","article-title":"Clinical evaluation of the newly formatted lateral-flow device for invasive pulmonary aspergillosis","volume":"61","author":"Hoenigl","year":"2018","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib287","doi-asserted-by":"crossref","first-page":"3648","DOI":"10.2174\/13816128113199990342","article-title":"Antifungal therapy of aspergillosis of the central nervous system and Aspergillus endophthalmitis","volume":"19","author":"Hoenigl","year":"2013","journal-title":"Current Pharmaceutical Design"},{"key":"10.1016\/j.simyco.2021.100115_bib288","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.jinf.2018.09.006","article-title":"Triacetylfusarinine C: A urine biomarker for diagnosis of invasive aspergillosis","volume":"78","author":"Hoenigl","year":"2019","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib289","doi-asserted-by":"crossref","first-page":"2039","DOI":"10.1128\/JCM.00467-14","article-title":"Performance of galactomannan, beta-d-glucan, Aspergillus lateral-flow device, conventional culture, and PCR tests with bronchoalveolar lavage fluid for diagnosis of invasive pulmonary aspergillosis","volume":"52","author":"Hoenigl","year":"2014","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib290","doi-asserted-by":"crossref","first-page":"266","DOI":"10.3109\/13693786.2011.603102","article-title":"Impact of galactomannan testing on the prevalence of invasive aspergillosis in patients with hematological malignancies","volume":"50","author":"Hoenigl","year":"2012","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib291","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1111\/myc.12060","article-title":"Sensitivity of galactomannan enzyme immunoassay for diagnosing breakthrough invasive aspergillosis under antifungal prophylaxis and empirical therapy","volume":"56","author":"Hoenigl","year":"2013","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib292","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1016\/S0002-9440(10)64775-X","article-title":"Chronic airway hyperreactivity, goblet cell hyperplasia, and peribronchial fibrosis during allergic airway disease induced by Aspergillus fumigatus","volume":"156","author":"Hogaboam","year":"2000","journal-title":"American Journal of Pathology"},{"key":"10.1016\/j.simyco.2021.100115_bib293","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1186\/s12864-018-5255-z","article-title":"Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole","volume":"20","author":"Hokken","year":"2019","journal-title":"BMC Genomics"},{"key":"10.1016\/j.simyco.2021.100115_bib294","doi-asserted-by":"crossref","first-page":"1987","DOI":"10.1002\/ps.4607","article-title":"Does agricultural use of azole fungicides contribute to resistance in the human pathogen Aspergillus fumigatus?","volume":"73","author":"Hollomon","year":"2017","journal-title":"Pest Management Science"},{"key":"10.1016\/j.simyco.2021.100115_bib295","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.01157-17","article-title":"Pharmacodynamics of the orotomides against Aspergillus fumigatus: New opportunities for treatment of multidrug-resistant fungal disease","volume":"8","author":"Hope","year":"2017","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib296","doi-asserted-by":"crossref","first-page":"S207","DOI":"10.1080\/13693780400025179","article-title":"The invasive and saprophytic syndromes due to Aspergillus spp","volume":"43","author":"Hope","year":"2005","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib297","doi-asserted-by":"crossref","first-page":"6058","DOI":"10.1074\/jbc.M114.628677","article-title":"Deciphering the combinatorial DNA-binding code of the CCAAT-binding complex and the iron-regulatory basic region leucine zipper (bZIP) transcription factor HapX","volume":"290","author":"Hortschansky","year":"2015","journal-title":"Journal of Biological Chemistry"},{"key":"10.1016\/j.simyco.2021.100115_bib298","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.3109\/13693786.2010.485582","article-title":"An inhalation model of airway allergic response to inhalation of environmental Aspergillus fumigatus conidia in sensitized BALB\/c mice","volume":"48","author":"Hoselton","year":"2010","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib299","doi-asserted-by":"crossref","first-page":"107","DOI":"10.3114\/sim.2007.59.12","article-title":"Polyphasic taxonomy of Aspergillus section Usti","volume":"59","author":"Houbraken","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib300","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.simyco.2020.05.002","article-title":"Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species","volume":"95","author":"Houbraken","year":"2020","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib301","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3114\/sim.2011.70.01","article-title":"Phylogeny of Penicillium and the segregation of Trichocomaceae into three families","volume":"70","author":"Houbraken","year":"2011","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib302","series-title":"Aspergillus and Penicillium in the post-genomic era","first-page":"1","article-title":"Taxonomy of Aspergillus, Penicillium and Talaromyces and its significance for biotechnology","author":"Houbraken","year":"2016"},{"key":"10.1016\/j.simyco.2021.100115_bib303","doi-asserted-by":"crossref","first-page":"fnv236","DOI":"10.1093\/femsle\/fnv236","article-title":"Aspergillus oerlinghausenensis, a new mould species closely related to A.\u00a0fumigatus","volume":"363","author":"Houbraken","year":"2016","journal-title":"FEMS Microbiology Letters"},{"key":"10.1016\/j.simyco.2021.100115_bib304","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0083077","article-title":"A\u00a0soluble fucose-specific lectin from Aspergillus fumigatus conidia--structure, specificity and possible role in fungal pathogenicity","volume":"8","author":"Houser","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib305","doi-asserted-by":"crossref","first-page":"1068","DOI":"10.3201\/eid1507.090043","article-title":"Frequency and evolution of azole resistance in Aspergillus fumigatus associated with treatment failure","volume":"15","author":"Howard","year":"2009","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib306","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1111\/j.1469-0691.2009.02911.x","article-title":"Azole resistance in allergic bronchopulmonary aspergillosis and Aspergillus bronchitis","volume":"16","author":"Howard","year":"2010","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib307","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1016\/j.ijantimicag.2006.08.017","article-title":"Multi-azole resistance in Aspergillus fumigatus","volume":"28","author":"Howard","year":"2006","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib725","unstructured":"https:\/\/clsi.org\/media\/3682\/m61ed2_sample.pdf Accessed on 08 January 2021."},{"key":"10.1016\/j.simyco.2021.100115_bib308","doi-asserted-by":"crossref","first-page":"e24","DOI":"10.1371\/journal.ppat.0030024","article-title":"Essential gene identification and drug target prioritization in Aspergillus fumigatus","volume":"3","author":"Hu","year":"2007","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib309","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1016\/S0140-6736(20)30183-5","article-title":"Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China","volume":"395","author":"Huang","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.simyco.2021.100115_bib310","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1099\/jmm.0.000435","article-title":"Matrix-assisted laser desorption\/ionization time-of-flight mass spectrometry for rapid identification of fungal rhinosinusitis pathogens","volume":"66","author":"Huang","year":"2017","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib311","doi-asserted-by":"crossref","first-page":"1990","DOI":"10.1097\/QAD.0b013e3282eeb413","article-title":"Aspergillus galactomannan antigenemia in penicilliosis marneffei","volume":"21","author":"Huang","year":"2007","journal-title":"AIDS"},{"key":"10.1016\/j.simyco.2021.100115_bib312","doi-asserted-by":"crossref","first-page":"142","DOI":"10.3767\/persoonia.2018.41.08","article-title":"Unravelling species boundaries in the Aspergillus viridinutans complex (section Fumigati): opportunistic human and animal pathogens capable of interspecific hybridization","volume":"41","author":"Hubka","year":"2018","journal-title":"Persoonia"},{"key":"10.1016\/j.simyco.2021.100115_bib313","doi-asserted-by":"crossref","first-page":"601","DOI":"10.3109\/13693786.2012.667578","article-title":"Rare and new etiological agents revealed among 178 clinical Aspergillus strains obtained from Czech patients and characterized by molecular sequencing","volume":"50","author":"Hubka","year":"2012","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib314","doi-asserted-by":"crossref","first-page":"169","DOI":"10.3852\/14-059","article-title":"Revision of Aspergillus section Flavipedes: seven new species and proposal of section Jani sect. nov","volume":"107","author":"Hubka","year":"2015","journal-title":"Mycologia"},{"key":"10.1016\/j.simyco.2021.100115_bib315","doi-asserted-by":"crossref","first-page":"2465","DOI":"10.1128\/jcm.26.11.2465-2466.1988","article-title":"Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity","volume":"26","author":"Hunter","year":"1988","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib316","doi-asserted-by":"crossref","first-page":"2443","DOI":"10.1093\/jac\/dkx168","article-title":"Isolation of azole-resistant Aspergillus fumigatus from the environment in the south-eastern USA","volume":"72","author":"Hurst","year":"2017","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib317","doi-asserted-by":"crossref","first-page":"416","DOI":"10.1056\/NEJMc063094","article-title":"Atypical antipsychotic drugs and Alzheimer\u2019s disease (retracted)","volume":"356","author":"Hussain","year":"2007","journal-title":"New England Journal of Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib318","doi-asserted-by":"crossref","first-page":"2365","DOI":"10.1128\/JCM.01075-16","article-title":"Species distribution and in\u00a0vitro azole susceptibility of Aspergillus section Nigri isolates from clinical and environmental settings","volume":"54","author":"Iatta","year":"2016","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib319","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1186\/1471-2180-10-105","article-title":"In\u00a0vivo bioluminescence imaging and histopathopathologic analysis reveal distinct roles for resident and recruited immune effector cells in defense against invasive aspergillosis","volume":"10","author":"Ibrahim-Granet","year":"2010","journal-title":"BMC Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib320","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.diagmicrobio.2018.01.003","article-title":"Comparative evaluation of different gradient diffusion tests for detection of azole resistance in Aspergillus fumigatus","volume":"91","author":"Idelevich","year":"2018","journal-title":"Diagnostic Microbiology and Infectious Disease"},{"key":"10.1016\/j.simyco.2021.100115_bib321","doi-asserted-by":"crossref","first-page":"962","DOI":"10.1093\/mmy\/myz004","article-title":"Multi-centric evaluation of the online MSI platform for the identification of cryptic and rare species of Aspergillus by MALDI-TOF","volume":"57","author":"Imbert","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib322","doi-asserted-by":"crossref","first-page":"e00872","DOI":"10.1128\/AAC.00872-18","article-title":"First clinical isolation of an azole-resistant Aspergillus fumigatus isolate harboring a TR46\/Y121F\/T289A mutation in South America","volume":"62","author":"Isla","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib323","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1111\/jam.13488","article-title":"Azole-resistant Aspergillus fumigatus in sawmills of Eastern France","volume":"123","author":"Jeanvoine","year":"2017","journal-title":"Journal of Applied Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib324","doi-asserted-by":"crossref","first-page":"390","DOI":"10.3390\/microorganisms8030390","article-title":"Galleria mellonella for the evaluation of antifungal efficacy against medically important fungi, a narrative review","volume":"8","author":"Jemel","year":"2020","journal-title":"Microorganisms"},{"key":"10.1016\/j.simyco.2021.100115_bib325","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1080\/14737159.2020.1820864","article-title":"Point-of-care diagnostics for invasive aspergillosis: nearing the finish line","volume":"20","author":"Jenks","year":"2020","journal-title":"Expert Review of Molecular Diagnostics"},{"key":"10.1016\/j.simyco.2021.100115_bib326","doi-asserted-by":"crossref","first-page":"S168","DOI":"10.1093\/mmy\/myy052","article-title":"Broad spectrum triazoles for invasive mould infections in adults: Which drug and when?","volume":"57","author":"Jenks","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib327","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1111\/myc.12881","article-title":"Point-of-care diagnosis of invasive aspergillosis in non-neutropenic patients: Aspergillus galactomannan lateral flow assay versus Aspergillus-specific lateral flow device test in bronchoalveolar lavage","volume":"62","author":"Jenks","year":"2019","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib328","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1016\/j.jinf.2018.10.014","article-title":"Bronchoalveolar lavage Aspergillus galactomannan lateral flow assay versus Aspergillus-specific lateral flow device test for diagnosis of invasive pulmonary aspergillosis in patients with hematological malignancies","volume":"78","author":"Jenks","year":"2019","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib329","doi-asserted-by":"crossref","DOI":"10.1093\/cid\/ciaa1281","article-title":"Performance of the bronchoalveolar lavage fluid Aspergillus galactomannan lateral flow assay with Cube Reader for diagnosis of invasive pulmonary aspergillosis: a multicenter cohort study","author":"Jenks","year":"2021","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib330","doi-asserted-by":"crossref","first-page":"116","DOI":"10.3390\/jof5040116","article-title":"Immune parameters for diagnosis and treatment monitoring in invasive mold infection","volume":"5","author":"Jenks","year":"2019","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib331","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.2147\/DDDT.S145545","article-title":"Spotlight on isavuconazole in the treatment of invasive aspergillosis and mucormycosis: design, development, and place in therapy","volume":"12","author":"Jenks","year":"2018","journal-title":"Drug Design, Development and Therapy"},{"key":"10.1016\/j.simyco.2021.100115_bib332","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1080\/14787210.2018.1558054","article-title":"Improving the rates of Aspergillus detection: an update on current diagnostic strategies","volume":"17","author":"Jenks","year":"2019","journal-title":"Expert Review of Anti-Infective Therapy"},{"key":"10.1016\/j.simyco.2021.100115_bib333","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1007\/s12281-019-00342-w","article-title":"New) methods for detection of Aspergillus fumigatus resistance in clinical samples","volume":"13","author":"Jenks","year":"2019","journal-title":"Current Fungal Infection Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib334","doi-asserted-by":"crossref","DOI":"10.1016\/j.cmi.2016.04.001","article-title":"Azole-resistant Aspergillus fumigatus in Denmark: a laboratory-based study on resistance mechanisms and genotypes","volume":"22","author":"Jensen","year":"2016","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib335","doi-asserted-by":"crossref","first-page":"5138","DOI":"10.1038\/s41467-018-07590-3","article-title":"Discovery of a potent HMG-CoA reductase degrader that eliminates statin-induced reductase accumulation and lowers cholesterol","volume":"9","author":"Jiang","year":"2018","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib336","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01277-17","article-title":"Emergence of echinocandin resistance due to a point mutation in the fks1 gene of Aspergillus fumigatus in a patient with chronic pulmonary aspergillosis","volume":"61","author":"Jim\u00e9nez-Ortigosa","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib337","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1093\/jac\/45.1.85","article-title":"Lack of correlation of in\u00a0vitro amphotericin B susceptibility testing with outcome in a murine model of Aspergillus infection","volume":"45","author":"Johnson","year":"2000","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib338","doi-asserted-by":"crossref","first-page":"807","DOI":"10.1517\/14656566.4.5.807","article-title":"Caspofungin: first approved agent in a new class of antifungals","volume":"4","author":"Johnson","year":"2003","journal-title":"Expert Opinion on Pharmacotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib339","doi-asserted-by":"crossref","first-page":"43","DOI":"10.4161\/viru.3.1.18654","article-title":"Duality of liver and kidney lesions after systemic infection of immunosuppressed and immunocompetent mice with Aspergillus fumigatus","volume":"3","author":"Jouvion","year":"2012","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib340","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1007\/s13318-018-0513-7","article-title":"Clinical pharmacokinetics of second-generation triazoles for the treatment of invasive aspergillosis and candidiasis","volume":"44","author":"Jovi\u0107","year":"2019","journal-title":"European Journal of Drug Metabolism and Pharmacokinetics"},{"key":"10.1016\/j.simyco.2021.100115_bib341","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.3389\/fmicb.2016.01107","article-title":"Dynamic immune cell recruitment after murine pulmonary Aspergillus fumigatus infection under different immunosuppressive regimens","volume":"7","author":"Kalleda","year":"2016","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib342","doi-asserted-by":"crossref","first-page":"113","DOI":"10.3390\/jof4030113","article-title":"The use of Galleria mellonella larvae to identify novel antimicrobial agents against fungal species of medical interest","volume":"4","author":"Kavanagh","year":"2018","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib343","first-page":"1387","article-title":"Fungal osteomyelitis in a patient with chronic granulomatous disease: Case report and review of the literature","volume":"68","author":"Khalid","year":"2018","journal-title":"Journal of the Pakistan Medical Association"},{"key":"10.1016\/j.simyco.2021.100115_bib344","doi-asserted-by":"crossref","first-page":"2903","DOI":"10.3389\/fmicb.2019.02903","article-title":"A\u00a0new age in molecular diagnostics for invasive fungal disease: Are we ready?","volume":"10","author":"Kidd","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib345","doi-asserted-by":"crossref","first-page":"S50","DOI":"10.1016\/j.jinf.2016.04.022","article-title":"Aspergillus infections in cystic fibrosis","volume":"72","author":"King","year":"2016","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib346","doi-asserted-by":"crossref","first-page":"15","DOI":"10.3390\/jof2020015","article-title":"Aspergillosis in chronic granulomatous disease","volume":"2","author":"King","year":"2016","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib347","doi-asserted-by":"crossref","first-page":"2865","DOI":"10.1128\/AAC.44.10.2865-2868.2000","article-title":"Efficacy of voriconazole in a guinea pig model of disseminated invasive aspergillosis","volume":"44","author":"Kirkpatrick","year":"2000","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib348","doi-asserted-by":"crossref","first-page":"1106","DOI":"10.1038\/s41467-019-14051-y","article-title":"A\u00a0comparative genomics study of 23 Aspergillus species from section Flavi","volume":"11","author":"Kj\u00e6rb\u00f8lling","year":"2020","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib349","doi-asserted-by":"crossref","first-page":"E753","DOI":"10.1073\/pnas.1715954115","article-title":"Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species","volume":"115","author":"Kj\u00e6rb\u00f8lling","year":"2018","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"10.1016\/j.simyco.2021.100115_bib350","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/j.mimet.2009.03.004","article-title":"Utility of CSP typing to sub-type clinical Aspergillus fumigatus isolates and proposal for a new CSP type nomenclature","volume":"77","author":"Klaassen","year":"2009","journal-title":"Journal of Microbiological Methods"},{"key":"10.1016\/j.simyco.2021.100115_bib351","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1093\/jac\/dkq041","article-title":"Novel mixed-format real-time PCR assay to detect mutations conferring resistance to triazoles in Aspergillus fumigatus and prevalence of multi-triazole resistance among clinical isolates in the Netherlands","volume":"65","author":"Klaassen","year":"2010","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib352","doi-asserted-by":"crossref","first-page":"47","DOI":"10.3114\/sim.2007.59.06","article-title":"Aspergillus strain typing in the genomics era","volume":"59","author":"Klaassen","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib353","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1093\/mmy\/myx064","article-title":"Amphotericin B and terbinafine but not the azoles prolong survival in Galleria mellonella larvae infected with Madurella mycetomatis","volume":"56","author":"Kloezen","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib354","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/j.simyco.2016.11.006","article-title":"Aspergillus is monophyletic: Evidence from multiple gene phylogenies and extrolites profiles","volume":"85","author":"Kocsub\u00e9","year":"2016","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib355","article-title":"Defining and managing COVID-19 associated pulmonary aspergillosis: The 2020 ECMM\/ISHAM consensus criteria for research and clinical guidance","author":"Koehler","year":"2020","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib356","doi-asserted-by":"crossref","first-page":"528","DOI":"10.1111\/myc.13096","article-title":"COVID\u201319 associated pulmonary aspergillosis","volume":"63","author":"Koehler","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib357","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1111\/myc.13183","article-title":"Bronchoscopy safety precautions for diagnosing COVID-19 associated pulmonary aspergillosis \u2013 A simulation study","volume":"64","author":"Koehler","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib358","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1016\/j.ijantimicag.2016.10.019","article-title":"Epidemiology of invasive aspergillosis and azole resistance in patients with acute leukaemia: the SEPIA Study","volume":"49","author":"Koehler","year":"2017","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib359","doi-asserted-by":"crossref","first-page":"476","DOI":"10.1016\/0002-9394(85)90017-0","article-title":"Treatment of Aspergillus fumigatus keratitis in rabbits with oral and topical ketoconazole","volume":"99","author":"Komadina","year":"1985","journal-title":"American Journal of Ophthalmology"},{"key":"10.1016\/j.simyco.2021.100115_bib360","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1080\/14789450.2018.1438193","article-title":"Application of the MALDI Biotyper to clinical microbiology: progress and potential","volume":"15","author":"Kostrzewa","year":"2018","journal-title":"Expert Review of Proteomics"},{"key":"10.1016\/j.simyco.2021.100115_bib361","doi-asserted-by":"crossref","first-page":"2430","DOI":"10.1038\/s41564-019-0558-7","article-title":"Fungal biofilm morphology impacts hypoxia fitness and disease progression","volume":"4","author":"Kowalski","year":"2019","journal-title":"Nature Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib362","doi-asserted-by":"crossref","first-page":"1298","DOI":"10.1128\/EC.4.7.1298-1307.2005","article-title":"Deletion and allelic exchange of the Aspergillus fumigatus veA locus via a novel recyclable marker module","volume":"4","author":"Krappmann","year":"2005","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib363","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1128\/EC.5.1.212-215.2006","article-title":"Gene targeting in Aspergillus fumigatus by homologous recombination is facilitated in a nonhomologous end-joining-deficient genetic background","volume":"5","author":"Krappmann","year":"2006","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib364","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1016\/j.diagmicrobio.2012.06.030","article-title":"In\u00a0vitro-in\u00a0vivo correlation of voriconazole resistance due to G448S mutation (cyp51A gene) in Aspergillus fumigatus","volume":"74","author":"Krishnan-Natesan","year":"2012","journal-title":"Diagnostic Microbiology and Infectious Disease"},{"key":"10.1016\/j.simyco.2021.100115_bib365","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1111\/mmi.13377","article-title":"The hypoxia-induced dehydrogenase HorA is required for coenzyme Q10 biosynthesis, azole sensitivity and virulence of Aspergillus fumigatus","volume":"101","author":"Kroll","year":"2016","journal-title":"Molecular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib366","doi-asserted-by":"crossref","first-page":"70","DOI":"10.3390\/pathogens8020070","article-title":"Fungal-bacterial interactions in ealth and disease","volume":"8","author":"Kr\u00fcger","year":"2019","journal-title":"Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib367","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1271\/bbb.66.404","article-title":"Transformation of Aspergillus sp. and Trichoderma reesei using the pyrithiamine resistance gene (ptrA) of Aspergillus oryzae","volume":"66","author":"Kubodera","year":"2002","journal-title":"Bioscience, Biotechnology, and Biochemistry"},{"key":"10.1016\/j.simyco.2021.100115_bib368","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1093\/glycob\/cwu091","article-title":"Significant structural change in both O- and N-linked carbohydrate moieties of the antigenic galactomannan from Aspergillus fumigatus grown under different culture conditions","volume":"25","author":"Kudoh","year":"2015","journal-title":"Glycobiology"},{"key":"10.1016\/j.simyco.2021.100115_bib369","doi-asserted-by":"crossref","first-page":"3564","DOI":"10.1128\/AAC.01544-10","article-title":"Failure of posaconazole therapy in a renal transplant patient with invasive aspergillosis due to Aspergillus fumigatus with attenuated susceptibility to posaconazole","volume":"55","author":"Kuipers","year":"2011","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib370","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1111\/j.1365-2958.2006.05373.x","article-title":"Deletion of the gliP gene of Aspergillus fumigatus results in loss of gliotoxin production but has no effect on virulence of the fungus in a low-dose mouse infection model","volume":"62","author":"Kupfahl","year":"2006","journal-title":"Molecular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib371","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1126\/science.366.6464.407","article-title":"New drugs target growing threat of fatal fungi","volume":"366","author":"Kupferschmidt","year":"2019","journal-title":"Science"},{"key":"10.1016\/j.simyco.2021.100115_bib372","doi-asserted-by":"crossref","first-page":"1480","DOI":"10.1128\/AAC.38.7.1480","article-title":"Morphological effects of lipopeptides against Aspergillus fumigatus correlate with activities against (1,3)-beta-D-glucan synthase","volume":"38","author":"Kurtz","year":"1994","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib373","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1006\/clim.2000.4993","article-title":"Purified recombinant A.\u00a0fumigatus allergens induce different responses in mice","volume":"98","author":"Kurup","year":"2001","journal-title":"Clinical Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib374","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1003743","article-title":"Aspergillus fumigatus \u2013 what makes the species a ubiquitous human fungal pathogen?","volume":"9","author":"Kwon-Chung","year":"2013","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib375","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1080\/21505594.2019.1614382","article-title":"Cryptic species of Aspergillus section Terrei display essential physiological features to cause infection and are similar in their virulence potential in Galleria mellonella","volume":"10","author":"Lackner","year":"2019","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib376","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1093\/mmy\/myx109","article-title":"Azole-resistant and -susceptible Aspergillus fumigatus isolates show comparable fitness and azole treatment outcome in immunocompetent mice","volume":"56","author":"Lackner","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib377","doi-asserted-by":"crossref","first-page":"3176","DOI":"10.1128\/JCM.00925-15","article-title":"Comparing Etest and broth microdilution for antifungal susceptibility testing of the most\u2013relevant pathogenic molds","volume":"53","author":"Lamoth","year":"2015","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib378","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1080\/13693780601185939","article-title":"Production of mycotoxins by Aspergillus lentulus and other medically important and closely related species in section Fumigati","volume":"45","author":"Larsen","year":"2007","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib379","doi-asserted-by":"crossref","first-page":"S155","DOI":"10.1093\/mmy\/myy103","article-title":"How to make a fast diagnosis in invasive aspergillosis","volume":"57","author":"Lass-Fl\u00f6rl","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib380","doi-asserted-by":"crossref","first-page":"2686","DOI":"10.1128\/JCM.00917-07","article-title":"Molecular typing of Aspergillus terreus isolates collected in Houston, Texas, and Innsbruck, Austria: evidence of great genetic diversity","volume":"45","author":"Lass-Fl\u00f6rl","year":"2007","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib381","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1111\/j.1365-2141.2005.05763.x","article-title":"Epidemiology and outcome of infections due to Aspergillus terreus: 10\u2013year single centre experience","volume":"131","author":"Lass-Fl\u00f6rl","year":"2005","journal-title":"British Journal of Haematology"},{"key":"10.1016\/j.simyco.2021.100115_bib382","doi-asserted-by":"crossref","first-page":"863","DOI":"10.1111\/j.1462-5822.2010.01474.x","article-title":"Tasting the fungal cell wall","volume":"12","author":"Latg\u00e9","year":"2010","journal-title":"Cellular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib383","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1146\/annurev-micro-030117-020406","article-title":"The cell wall of the human fungal pathogen Aspergillus fumigatus: Biosynthesis, organization, immune response, and virulence","volume":"71","author":"Latg\u00e9","year":"2017","journal-title":"Annual Review of Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib384","doi-asserted-by":"crossref","DOI":"10.1128\/CMR.00140-18","article-title":"Aspergillus fumigatus and Aspergillosis in 2019","volume":"33","author":"Latg\u00e9","year":"2019","journal-title":"Clinical Microbiology Reviews"},{"key":"10.1016\/j.simyco.2021.100115_bib385","doi-asserted-by":"crossref","first-page":"2098","DOI":"10.3389\/fmicb.2019.02098","article-title":"Multicenter study demonstrates standardization requirements for mold identification by MALDI-TOF MS","volume":"10","author":"Lau","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib386","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1093\/cid\/ciw664","article-title":"Home environment as a source of life-threatening azole-resistant Aspergillus fumigatus in immunocompromised patients","volume":"64","author":"Lavergne","year":"2017","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib387","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1128\/AAC.02234-15","article-title":"Azole resistance in Aspergillus fumigatus clinical isolates from an Italian Culture Collection","volume":"60","author":"Lazzarini","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib388","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1093\/jac\/38.2.215","article-title":"Liposomal amphotericin B (AmBisome) reduces dissemination of infection as compared with amphotericin B deoxycholate (Fungizone) in a rate model of pulmonary aspergillosis","volume":"38","author":"Leenders","year":"1996","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib389","doi-asserted-by":"crossref","first-page":"e02655","DOI":"10.1128\/AAC.02655-17","article-title":"Antifungal prophylaxis with posaconazole delayed-release tablet and oral suspension in a real-life setting: Plasma levels, efficacy, and tolerability","volume":"62","author":"Lenczuk","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib390","doi-asserted-by":"crossref","first-page":"5420","DOI":"10.1128\/AAC.00905-16","article-title":"Aspergillus fumigatus intrinsic fluconazole resistance is due to the naturally occurring T301I substitution in Cyp51Ap","volume":"60","author":"Leonardelli","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib391","article-title":"Antifungal pharmacokinetics and pharmacodynamics","volume":"5","author":"Lepak","year":"2014","journal-title":"Cold Spring Harbor Perspectives in Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib392","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1128\/AAC.01279-12","article-title":"Posaconazole pharmacodynamic target determination against wild-type and Cyp51 mutant isolates of Aspergillus fumigatus in an in\u00a0vivo model of invasive pulmonary aspergillosis","volume":"57","author":"Lepak","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib393","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1016\/S1473-3099(20)30200-0","article-title":"Clinical and virological data of the first cases of COVID-19 in Europe: A case series","volume":"20","author":"Lescure","year":"2020","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib394","doi-asserted-by":"crossref","first-page":"1463","DOI":"10.1093\/cid\/ciy859","article-title":"Voriconazole resistance and mortality in invasive aspergillosis: A multicenter retrospective cohort study","volume":"68","author":"Lestrade","year":"2019","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib395","doi-asserted-by":"crossref","first-page":"1380","DOI":"10.1128\/EC.00229-06","article-title":"Coding tandem repeats generate diversity in Aspergillus fumigatus genes","volume":"6","author":"Levdansky","year":"2007","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib396","doi-asserted-by":"crossref","first-page":"S271","DOI":"10.1080\/13693780802227159","article-title":"Invasive aspergillosis in glucocorticoid-treated patients","volume":"47","author":"Lewis","year":"2009","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib397","doi-asserted-by":"crossref","first-page":"S466","DOI":"10.1093\/infdis\/jix222","article-title":"Animal models for studying triazole resistance in Aspergillus fumigatus","volume":"216","author":"Lewis","year":"2017","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib398","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1007\/s11046-014-9790-0","article-title":"Phylogenetic analyses on the diversity of Aspergillus fumigatus sensu lato based on five orthologous loci","volume":"178","author":"Li","year":"2014","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib399","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1016\/j.jmii.2018.04.003","article-title":"Antifungal susceptibility of clinical isolates of 25 genetically confirmed Aspergillus species collected from Taiwan and Mainland China","volume":"53","author":"Li","year":"2020","journal-title":"Journal of Microbiology, Immunology, and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib400","doi-asserted-by":"crossref","first-page":"378","DOI":"10.1007\/s00203-004-0667-3","article-title":"Deletion of the Aspergillus fumigatus lysine biosynthesis gene lysF encoding homoaconitase leads to attenuated virulence in a low-dose mouse infection model of invasive aspergillosis","volume":"181","author":"Liebmann","year":"2004","journal-title":"Archives of Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib401","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1007\/978-1-61779-539-8_32","article-title":"Drosophila melanogaster as a model organism for invasive aspergillosis","volume":"845","author":"Lionakis","year":"2012","journal-title":"Methods in Molecular Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib402","doi-asserted-by":"crossref","first-page":"4321","DOI":"10.1128\/AAC.00003-15","article-title":"Multiple cyp51A-based mechanisms identified in azole-resistant isolates of Aspergillus fumigatus from China","volume":"59","author":"Liu","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib403","doi-asserted-by":"crossref","first-page":"400","DOI":"10.1093\/mmy\/myv102","article-title":"Cyp51A-based mechanism of azole resistance in Aspergillus fumigatus: Illustration by a new 3D structural model of Aspergillus fumigatus CYP51A protein","volume":"54","author":"Liu","year":"2016","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib404","doi-asserted-by":"crossref","first-page":"4465","DOI":"10.1128\/AAC.00185-11","article-title":"Azole resistance in Aspergillus fumigatus isolates from the ARTEMIS global surveillance study is primarily due to the TR\/L98H mutation in the cyp51A gene","volume":"55","author":"Lockhart","year":"2011","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib405","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01690-16","article-title":"The paradoxical effect of echinocandins in Aspergillus fumigatus relies on recovery of the \u03b2-1,3-glucan synthase Fks1","volume":"61","author":"Loiko","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib406","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004834","article-title":"Genetic analysis using an isogenic mating pair of Aspergillus fumigatus identifies azole resistance genes and lack of MAT locus\u2019s role in virulence","volume":"11","author":"Losada","year":"2015","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib407","doi-asserted-by":"crossref","first-page":"1117","DOI":"10.1128\/JCM.31.5.1117-1121.1993","article-title":"Application of polymerase chain reaction to fingerprinting Aspergillus fumigatus by random amplification of polymorphic DNA","volume":"31","author":"Loudon","year":"1993","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib408","doi-asserted-by":"crossref","first-page":"1601062","DOI":"10.1183\/13993003.01062-2016","article-title":"Predictors of mortality in chronic pulmonary aspergillosis","volume":"49","author":"Lowes","year":"2017","journal-title":"European Respiratory Journal"},{"key":"10.1016\/j.simyco.2021.100115_bib409","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1093\/jac\/dkf103","article-title":"Influence of grapefruit juice on itraconazole plasma levels in mice and guinea pigs","volume":"50","author":"MacCallum","year":"2002","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib410","doi-asserted-by":"crossref","first-page":"1563","DOI":"10.1086\/423381","article-title":"Efficacy and safety of caspofungin for treatment of invasive aspergillosis in patients refractory to or intolerant of conventional antifungal therapy","volume":"39","author":"Maertens","year":"2004","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib411","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1086\/423380","article-title":"Combination antifungal therapy for invasive aspergillosis","volume":"39","author":"Marr","year":"2004","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib412","doi-asserted-by":"crossref","first-page":"81","DOI":"10.7326\/M13-2508","article-title":"Combination antifungal therapy for invasive aspergillosis: a randomized trial","volume":"162","author":"Marr","year":"2015","journal-title":"Annals of Internal Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib413","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1128\/AAC.41.1.13","article-title":"Comparison of voriconazole (UK-109, 496) and itraconazole in prevention and treatment of Aspergillus fumigatus endocarditis in guinea pigs","volume":"41","author":"Martin","year":"1997","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib414","doi-asserted-by":"crossref","first-page":"1766","DOI":"10.1099\/jmm.0.001109","article-title":"A\u00a0positive BAL galactomannan in non-haemato-oncology patients risks harmful overtreatment","volume":"68","author":"Martinelli","year":"2019","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib415","doi-asserted-by":"crossref","first-page":"858","DOI":"10.3109\/13693781003586943","article-title":"Evaluation of the Etest method for susceptibility testing of Aspergillus spp. and Fusarium spp. to three echinocandins","volume":"48","author":"Martos","year":"2010","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib416","doi-asserted-by":"crossref","first-page":"591","DOI":"10.1080\/21505594.2015.1045183","article-title":"Galleria mellonella as a host model to study Aspergillus terreus virulence and amphotericin B resistance","volume":"6","author":"Maurer","year":"2015","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib417","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1093\/mmy\/myy042","article-title":"Galleria mellonella as a model system to study virulence potential of mucormycetes and evaluation of antifungal treatment","volume":"57","author":"Maurer","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib418","doi-asserted-by":"crossref","first-page":"4758","DOI":"10.1128\/AAC.00606-10","article-title":"Impact of cyp51A mutations on the pharmacokinetic and pharmacodynamic properties of voriconazole in a murine model of disseminated aspergillosis","volume":"54","author":"Mavridou","year":"2010","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib419","series-title":"International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011","author":"McNeill","year":"2012"},{"key":"10.1016\/j.simyco.2021.100115_bib420","doi-asserted-by":"crossref","first-page":"512","DOI":"10.3389\/fmicb.2019.00512","article-title":"Mycobiome sequencing and analysis applied to fungal community profiling of the lower respiratory tract during fungal pathogenesis","volume":"10","author":"McTaggart","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib421","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1038\/35100529","article-title":"Toll-like receptors and innate immunity","volume":"1","author":"Medzhitov","year":"2001","journal-title":"Nature Reviews Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib422","doi-asserted-by":"crossref","first-page":"79","DOI":"10.3390\/jof6020079","article-title":"Azole-resistant COVID-19-associated pulmonary aspergillosis in an immunocompetent host: A case report","volume":"6","author":"Meijer","year":"2020","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib423","doi-asserted-by":"crossref","first-page":"2524","DOI":"10.1128\/AAC.05959-11","article-title":"Epidemiological cutoff values for azoles and Aspergillus fumigatus based on a novel mathematical approach incorporating cyp51A sequence analysis","volume":"56","author":"Meletiadis","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib424","doi-asserted-by":"crossref","first-page":"2247","DOI":"10.1093\/jac\/dkz154","article-title":"Development and multicentre validation of an agar-based screening method for echinocandin susceptibility testing of Aspergillus species","volume":"74","author":"Meletiadis","year":"2019","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib425","doi-asserted-by":"crossref","first-page":"1799","DOI":"10.1093\/jac\/dkaa102","article-title":"A\u00a0multicentre study to optimize echinocandin susceptibility testing of Aspergillus species with the EUCAST methodology and a broth microdilution colorimetric method","volume":"75","author":"Meletiadis","year":"2020","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib426","doi-asserted-by":"crossref","first-page":"1897","DOI":"10.1128\/AAC.01092-06","article-title":"A\u00a0new Aspergillus fumigatus resistance mechanism conferring in\u00a0vitro cross-resistance to azole antifungals involves a combination of cyp51A alterations","volume":"51","author":"Mellado","year":"2007","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib427","doi-asserted-by":"crossref","first-page":"2536","DOI":"10.1128\/AAC.49.6.2536-2538.2005","article-title":"Targeted gene disruption of the 14-alpha sterol demethylase (cyp51A) in Aspergillus fumigatus and its role in azole drug susceptibility","volume":"49","author":"Mellado","year":"2005","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib428","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00168-17","article-title":"Susceptibility testing of common and uncommon Aspergillus species against posaconazole and other mold-active antifungal azoles using the Sensititre method","volume":"61","author":"Mello","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib429","first-page":"399","article-title":"Successful treatment of invasive fungal infection due to highly resistant Aspergillus calidoustus in an allogeneic hematopoietic cell transplant recipient","volume":"185","author":"Mendoza","year":"2020","journal-title":"Mycopathologia"},{"key":"10.1016\/j.simyco.2021.100115_bib430","doi-asserted-by":"crossref","first-page":"616","DOI":"10.1093\/mmy\/myw005","article-title":"Identification of Aspergillus fumigatus multidrug transporter genes and their potential involvement in antifungal resistance","volume":"54","author":"Meneau","year":"2016","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib431","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1016\/j.jhin.2004.10.009","article-title":"Epidemiological study of invasive pulmonary aspergillosis in a haematology unit by molecular typing of environmental and patient isolates of Aspergillus fumigatus","volume":"60","author":"Menotti","year":"2005","journal-title":"Journal of Hospital Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib432","doi-asserted-by":"crossref","first-page":"444","DOI":"10.1093\/mmy\/myz079","article-title":"Lateral flow assays for diagnosing invasive pulmonary aspergillosis in adult hematology patients: A comparative multicenter study","volume":"58","author":"Mercier","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib433","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1007\/s10529-010-0473-8","article-title":"Aspergillus as a multi-purpose cell factory: current status and perspectives","volume":"33","author":"Meyer","year":"2011","journal-title":"Biotechnology Letters"},{"key":"10.1016\/j.simyco.2021.100115_bib434","doi-asserted-by":"crossref","DOI":"10.1002\/prp2.546","article-title":"Rezafungin treatment in mouse models of invasive candidiasis and aspergillosis: Insights on the PK\/PD pharmacometrics of rezafungin efficacy","volume":"7","author":"Miesel","year":"2019","journal-title":"Pharmacology Research & Perspectives"},{"key":"10.1016\/j.simyco.2021.100115_bib435","doi-asserted-by":"crossref","first-page":"987","DOI":"10.1093\/mmy\/myz002","article-title":"Use of Aspergillus fumigatus real-time PCR in bronchoalveolar lavage samples (BAL) for diagnosis of invasive aspergillosis, including azole-resistant cases, in high risk haematology patients: the need for a combined use with galactomannan","volume":"57","author":"Mikulska","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib436","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1016\/j.mycmed.2019.01.006","article-title":"Usefulness of animal models of aspergillosis in studying immunity against Aspergillus infections","volume":"29","author":"Mirkov","year":"2019","journal-title":"Journal de Mycologie Medicale"},{"key":"10.1016\/j.simyco.2021.100115_bib437","doi-asserted-by":"crossref","first-page":"1655","DOI":"10.1039\/C7MT00110J","article-title":"The cytochrome b5 CybE is regulated by iron availability and is crucial for azole resistance in A.\u00a0fumigatus","volume":"9","author":"Misslinger","year":"2017","journal-title":"Metallomics"},{"key":"10.1016\/j.simyco.2021.100115_bib438","doi-asserted-by":"crossref","first-page":"1368","DOI":"10.1111\/myc.13185","article-title":"Putative invasive pulmonary aspergillosis in critically ill patients with COVID-19: An observational study from New York City","volume":"63","author":"Mitaka","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib439","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1111\/myc.13052","article-title":"Positive Aspergillus PCR as a marker of azole resistance or sub\u2013therapeutic antifungal therapy in patients with chronic pulmonary aspergillosis","volume":"63","author":"Moazam","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib440","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1016\/j.mmcr.2020.06.005","article-title":"Multi-triazole-resistant Aspergillus fumigatus and SARS-CoV-2 co-infection: A lethal combination","volume":"31","author":"Mohamed","year":"2021","journal-title":"Medical Mycology Case Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib441","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1111\/j.1574-695X.1997.tb01001.x","article-title":"Molecular typing of Aspergillus fumigatus strains by sequence-specific DNA primer (SSDP) analysis","volume":"17","author":"Mondon","year":"1997","journal-title":"FEMS Immunology and Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib442","doi-asserted-by":"crossref","first-page":"1140","DOI":"10.1111\/jam.14217","article-title":"Aspergillus species collected from environmental air samples in Portugal-molecular identification, antifungal susceptibility and sequencing of cyp51A gene on A.\u00a0fumigatus sensu stricto itraconazole resistant","volume":"126","author":"Monteiro","year":"2019","journal-title":"Journal of Applied Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib443","doi-asserted-by":"crossref","first-page":"2391","DOI":"10.1128\/JCM.00520-17","article-title":"Culture-based methods and molecular tools for azole-resistant Aspergillus fumigatus detection in a Belgian University Hospital","volume":"55","author":"Montesinos","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib444","doi-asserted-by":"crossref","first-page":"3439","DOI":"10.1093\/jac\/dku289","article-title":"New case of azole-resistant Aspergillus fumigatus due to TR46\/Y121F\/T289A mutation in Belgium, July 2012","volume":"69","author":"Montesinos","year":"2013","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib445","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1016\/j.ijantimicag.2017.01.004","article-title":"First isolation of the pan-azole-resistant Aspergillus fumigatus cyp51A TR46\/Y121F\/T289A mutant in a UK patient","volume":"49","author":"Moore","year":"2017","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib446","doi-asserted-by":"crossref","first-page":"1882","DOI":"10.1128\/AAC.45.6.1882-1885.2001","article-title":"In\u00a0vitro activities of terbinafine against Aspergillus species in comparison with those of itraconazole and amphotericin B","volume":"45","author":"Moore","year":"2001","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib447","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1093\/jac\/49.1.209","article-title":"Resistance to amphotericin B does not emerge during treatment for invasive aspergillosis","volume":"49","author":"Moosa","year":"2002","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib448","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00710-17","article-title":"Caspofungin-mediated growth inhibition and paradoxical growth in Aspergillus fumigatus involve fungicidal hyphal tip lysis coupled with regenerative intrahyphal growth and dynamic changes in \u03b2-1,3-glucan synthase localization","volume":"61","author":"Moreno-Vel\u00e1squez","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib449","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004462","article-title":"IL-37 inhibits inflammasome activation and disease severity in murine aspergillosis","volume":"10","author":"Moretti","year":"2014","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib450","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1111\/myc.12702","article-title":"PCR-based detection of Aspergillus fumigatus and absence of azole resistance due to TR34\/L98H in a french multicenter cohort of 137 patients with fungal rhinosinusitis","volume":"61","author":"Morio","year":"2018","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib451","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1008201","article-title":"The CRISPR toolbox in medical mycology: State of the art and perspectives","volume":"16","author":"Morio","year":"2020","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib452","doi-asserted-by":"crossref","first-page":"4545","DOI":"10.1128\/AAC.00692-10","article-title":"Environmental study of azole-resistant Aspergillus fumigatus and other aspergilli in Austria, Denmark, and Spain","volume":"54","author":"Mortensen","year":"2010","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib453","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1128\/AAC.45.5.1456-1462.2001","article-title":"Susceptibility testing of Aspergillus flavus: inoculum dependence with itraconazole and lack of correlation between susceptibility to amphotericin B in\u00a0vitro and outcome in\u00a0vivo","volume":"45","author":"Mosquera","year":"2001","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib454","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1093\/jac\/dkx427","article-title":"MIC-based dose adjustment: facts and fables","volume":"73","author":"Mouton","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib455","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1186\/s12879-016-1796-4","article-title":"Aspergillus fumigatus carrying TR34\/L98H resistance allele causing complicated suppurative otitis media in Tanzania: Call for improved diagnosis of fungi in sub-Saharan Africa","volume":"16","author":"Mushi","year":"2016","journal-title":"BMC Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib456","first-page":"21","article-title":"The innate immune system of mammals and insects","volume":"15","author":"M\u00fcller","year":"2008","journal-title":"Contributions to Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib457","doi-asserted-by":"crossref","first-page":"444","DOI":"10.1126\/science.aas8836","article-title":"Field-deployable viral diagnostics using CRISPR-Cas13","volume":"360","author":"Myhrvold","year":"2018","journal-title":"Science"},{"key":"10.1016\/j.simyco.2021.100115_bib458","doi-asserted-by":"crossref","first-page":"468","DOI":"10.1099\/jmm.0.000255","article-title":"High prevalence of clinical and environmental triazole-resistant Aspergillus fumigatus in Iran: is it a challenging issue?","volume":"65","author":"Nabili","year":"2016","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib459","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1111\/j.1439-0507.1994.tb00425.x","article-title":"Aspergillus chevalieri (Mangin) Thom and Church: a new opportunistic pathogen of human cutaneous aspergillosis","volume":"37","author":"Naidu","year":"1994","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib460","doi-asserted-by":"crossref","first-page":"1719","DOI":"10.1128\/AAC.47.5.1719-1726.2003","article-title":"Multiple resistance mechanisms among Aspergillus fumigatus mutants with high-level resistance to itraconazole","volume":"47","author":"Nascimento","year":"2003","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib461","doi-asserted-by":"crossref","first-page":"361","DOI":"10.1093\/mmy\/myx056","article-title":"Simulations of CYP51A from Aspergillus fumigatus in a model bilayer provide insights into triazole drug resistance","volume":"56","author":"Nash","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib462","doi-asserted-by":"crossref","first-page":"1433","DOI":"10.1128\/JCM.34.6.1433-1439.1996","article-title":"Murine model of invasive pulmonary aspergillosis following an earlier stage, noninvasive Aspergillus infection","volume":"34","author":"Nawada","year":"1996","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib463","doi-asserted-by":"crossref","first-page":"3633","DOI":"10.1128\/JCM.01582-14","article-title":"Cryptic and rare Aspergillus species in Brazil: prevalence in clinical samples and in\u00a0vitro susceptibility to triazoles","volume":"52","author":"Negri","year":"2014","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib464","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1086\/595846","article-title":"Epidemiology and outcome of invasive fungal infection in adult hematopoietic stem cell transplant recipients: analysis of Multicenter Prospective Antifungal Therapy (PATH) Alliance registry","volume":"48","author":"Neofytos","year":"2009","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib465","doi-asserted-by":"crossref","first-page":"930","DOI":"10.1111\/mmi.13167","article-title":"Mitochondrial dynamics in the pathogenic mold Aspergillus fumigatus: therapeutic and evolutionary implications","volume":"98","author":"Neubauer","year":"2015","journal-title":"Molecular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib466","doi-asserted-by":"crossref","first-page":"1428","DOI":"10.1093\/nar\/24.8.1428","article-title":"Afut1, a retrotransposon-like element from Aspergillus fumigatus","volume":"24","author":"Neuveglise","year":"1996","journal-title":"Nucleic Acids Research"},{"key":"10.1016\/j.simyco.2021.100115_bib467","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1016\/j.ymeth.2014.02.023","article-title":"Methods to study Drosophila immunity","volume":"68","author":"Neyen","year":"2014","journal-title":"Methods"},{"key":"10.1016\/j.simyco.2021.100115_bib468","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.1038\/nature04332","article-title":"Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus","volume":"438","author":"Nierman","year":"2005","journal-title":"Nature"},{"key":"10.1016\/j.simyco.2021.100115_bib469","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0133085","article-title":"A\u00a0CRISPR-Cas9 system for genetic engineering of filamentous fungi","volume":"10","author":"N\u00f8dvig","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib470","doi-asserted-by":"crossref","first-page":"840","DOI":"10.1093\/ajcp\/70.5.840","article-title":"Allergic bronchopulmonary aspergillosis caused by Aspergillus ochraceus","volume":"70","author":"Novey","year":"1978","journal-title":"American Journal of Clinical Pathology"},{"key":"10.1016\/j.simyco.2021.100115_bib471","doi-asserted-by":"crossref","first-page":"1085","DOI":"10.1093\/mmy\/myaa020","article-title":"Comparative evaluation of MIRONAUT-AM and CLSI broth microdilution method for antifungal susceptibility testing of Aspergillus species against four commonly used antifungals","volume":"58","author":"Nuh","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib472","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1038\/nature07528","article-title":"Discovery of a sexual cycle in the opportunistic fungal pathogen Aspergillus fumigatus","volume":"457","author":"O\u2019Gorman","year":"2009","journal-title":"Nature"},{"key":"10.1016\/j.simyco.2021.100115_bib473","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1016\/j.jinf.2017.05.014","article-title":"Bronchoalveolar lavage triacetylfusarinine C (TAFC) determination for diagnosis of invasive pulmonary aspergillosis in patients with hematological malignancies","volume":"75","author":"Orasch","year":"2017","journal-title":"Journal of Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib474","doi-asserted-by":"crossref","first-page":"2319","DOI":"10.3201\/eid2512.191020","article-title":"Aspergillus felis in patient with chronic granulomatous disease","volume":"25","author":"Paccoud","year":"2019","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib475","doi-asserted-by":"crossref","first-page":"1101","DOI":"10.1086\/651262","article-title":"Invasive fungal infections among organ transplant recipients: results of the Transplant-Associated Infection Surveillance Network (TRANSNET)","volume":"50","author":"Pappas","year":"2010","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib476","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1186\/s12885-019-5557-9","article-title":"Micafungin prophylaxis for acute leukemia patients undergoing induction chemotherapy","volume":"19","author":"Park","year":"2019","journal-title":"BMC Cancer"},{"key":"10.1016\/j.simyco.2021.100115_bib477","doi-asserted-by":"crossref","first-page":"1080","DOI":"10.1093\/cid\/cis599","article-title":"The effect of therapeutic drug monitoring on safety and efficacy of voriconazole in invasive fungal infections: a randomized controlled trial","volume":"55","author":"Park","year":"2012","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib478","doi-asserted-by":"crossref","first-page":"4","DOI":"10.3390\/jof5010004","article-title":"A\u00a0moldy application of MALDI: MALDI-ToF mass spectrometry for fungal identification","volume":"5","author":"Patel","year":"2019","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib479","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.1111\/jphp.12780","article-title":"Echinocandins in antifungal pharmacotherapy","volume":"69","author":"Patil","year":"2017","journal-title":"Journal of Pharmacy and Pharmacology"},{"key":"10.1016\/j.simyco.2021.100115_bib480","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1016\/j.semcdb.2018.03.003","article-title":"Pattern recognition receptors in fungal immunity","volume":"89","author":"Patin","year":"2019","journal-title":"Seminars in Cell & Developmental Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib481","doi-asserted-by":"crossref","first-page":"1985","DOI":"10.1128\/AAC.35.10.1985","article-title":"Efficacy of SCH 39304 in treatment of experimental invasive aspergillosis","volume":"35","author":"Patterson","year":"1991","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib482","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1093\/infdis\/158.2.415","article-title":"Effect of immunosuppression and amphotericin B on Aspergillus antigenemia in an experimental model","volume":"158","author":"Patterson","year":"1988","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib483","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.1093\/cid\/ciw326","article-title":"Practice guidelines for the diagnosis and management of aspergillosis: 2016 update by the Infectious Diseases Society of America","volume":"63","author":"Patterson","year":"2016","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib484","doi-asserted-by":"crossref","first-page":"e02748","DOI":"10.1128\/AAC.02748-16","article-title":"Contributions of both ATP-binding cassette transporter and Cyp51A proteins are essential for azole resistance in Aspergillus fumigatus","volume":"61","author":"Paul","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib485","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/j.fgb.2013.06.004","article-title":"Functional analysis of an ATP-binding cassette transporter protein from Aspergillus fumigatus by heterologous expression in Saccharomyces cerevisiae","volume":"57","author":"Paul","year":"2013","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib486","doi-asserted-by":"crossref","first-page":"e02563","DOI":"10.1128\/mBio.02563-18","article-title":"AtrR is an essential determinant of azole resistance in Aspergillus fumigatus","volume":"10","author":"Paul","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib487","doi-asserted-by":"crossref","first-page":"1380","DOI":"10.1016\/j.drudis.2014.06.006","article-title":"Animal models of invasive aspergillosis for drug discovery","volume":"19","author":"Paulussen","year":"2014","journal-title":"Drug Discovery Today"},{"key":"10.1016\/j.simyco.2021.100115_bib488","doi-asserted-by":"crossref","first-page":"2531","DOI":"10.1128\/JCM.00329-12","article-title":"Resistance to voriconazole due to a G448S substitution in Aspergillus fumigatus in a patient with cerebral aspergillosis","volume":"50","author":"Pel\u00e1ez","year":"2012","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib489","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/j.nmni.2015.04.005","article-title":"First detection of Aspergillus fumigatus azole-resistant strain due to Cyp51A TR46\/Y121F\/T289A in an azole-na\u00efve patient in Spain","volume":"6","author":"Pel\u00e1ez","year":"2015","journal-title":"New Microbes and New Infections"},{"key":"10.1016\/j.simyco.2021.100115_bib490","first-page":"268","article-title":"Performance of the AsperGenius(R) PCR assay for detecting azole resistant Aspergillus fumigatus in BAL fluids from allogeneic HSCT recipients: A prospective cohort study from Essen, West Germany","volume":"58","author":"Pelzer","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib491","doi-asserted-by":"crossref","first-page":"105807","DOI":"10.1016\/j.ijantimicag.2019.09.011","article-title":"Azole resistance mechanisms in Aspergillus: update and recent advances","volume":"55","author":"P\u00e9rez-Cantero","year":"2020","journal-title":"International Journal of Antimicrobial Agents"},{"key":"10.1016\/j.simyco.2021.100115_bib492","doi-asserted-by":"crossref","first-page":"S612","DOI":"10.1093\/cid\/civ791","article-title":"Echinocandin resistance in Candida","volume":"61","author":"Perlin","year":"2015","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib493","series-title":"7th. Advances Against Aspergillosis conference, March 3\u20135, 2016. Manchester, UK","article-title":"Prospective evaluation of azole resistance in Aspergillus fumigatus clinical isolates in Pakistan","author":"Perveen","year":"2016"},{"key":"10.1016\/j.simyco.2021.100115_bib494","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1128\/AAC.46.1.12-23.2002","article-title":"Antifungal efficacy of caspofungin (MK-0991) in experimental pulmonary aspergillosis in persistently neutropenic rabbits: pharmacokinetics, drug disposition, and relationship to galactomannan antigenemia","volume":"46","author":"Petraitiene","year":"2002","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib495","doi-asserted-by":"crossref","first-page":"1178","DOI":"10.1093\/mmy\/myaa009","article-title":"An intergenic \u201csafe haven\u201d region in Aspergillus fumigatus","volume":"58","author":"Pham","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib496","doi-asserted-by":"crossref","first-page":"1656","DOI":"10.3389\/fmicb.2018.01656","article-title":"Aspergillus species and antifungals susceptibility in clinical setting in the North of Portugal: Cryptic species and emerging azoles resistance in A.\u00a0fumigatus","volume":"9","author":"Pinto","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib497","doi-asserted-by":"crossref","first-page":"e02059","DOI":"10.1128\/AAC.02059-19","article-title":"Aspergillus fumigatus clinical isolates carrying CYP51A with TR34\/L98H\/S297T\/F495I substitutions detected after four\u2013year retrospective azole resistance screening in Brazil","volume":"64","author":"Pontes","year":"2020","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib498","doi-asserted-by":"crossref","first-page":"555","DOI":"10.3389\/fmicb.2018.00555","article-title":"Comparison of two molecular assays for detection and characterization of Aspergillus fumigatus triazole resistance and Cyp51A mutations in clinical isolates and primary clinical samples of immunocompromised patients","volume":"9","author":"Postina","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib499","doi-asserted-by":"crossref","first-page":"5595","DOI":"10.1128\/AAC.00389-16","article-title":"Posaconazole plasma concentrations on days three to five predict steady\u2013state levels","volume":"60","author":"Prattes","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib500","doi-asserted-by":"crossref","first-page":"922","DOI":"10.1164\/rccm.201407-1275OC","article-title":"Novel tests for diagnosis of invasive aspergillosis in patients with underlying respiratory diseases","volume":"190","author":"Prattes","year":"2014","journal-title":"American Journal of Respiratory and Critical Care Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib501","doi-asserted-by":"crossref","first-page":"803","DOI":"10.1093\/mmy\/myx011","article-title":"Invasive aspergillosis in patients with underlying liver cirrhosis: a prospective cohort study","volume":"55","author":"Prattes","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib502","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1111\/myc.12757","article-title":"Evaluation of the new AspID polymerase chain reaction assay for detection of Aspergillus species: A pilot study","volume":"61","author":"Prattes","year":"2018","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib503","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1111\/myc.12343","article-title":"Diagnostic accuracy of the Aspergillus-specific bronchoalveolar lavage lateral-flow assay in haematological malignancy patients","volume":"58","author":"Prattes","year":"2015","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib504","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1016\/j.mmcr.2020.05.001","article-title":"Invasive pulmonary aspergillosis complicating COVID-19 in the ICU \u2013 A case report","volume":"31","author":"Prattes","year":"2021","journal-title":"Medical Mycology Case Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib505","doi-asserted-by":"crossref","first-page":"1054","DOI":"10.1002\/ps.4029","article-title":"Azole fungicides \u2013 understanding resistance mechanisms in agricultural fungal pathogens","volume":"71","author":"Price","year":"2015","journal-title":"Pest Management Science"},{"key":"10.1016\/j.simyco.2021.100115_bib506","doi-asserted-by":"crossref","first-page":"64","DOI":"10.1016\/j.jcf.2016.06.006","article-title":"Triazole resistance in Aspergillus fumigatus isolates from patients with cystic fibrosis in Italy","volume":"16","author":"Prigitano","year":"2017","journal-title":"Journal of Cystic Fibrosis"},{"key":"10.1016\/j.simyco.2021.100115_bib507","first-page":"20747","article-title":"Azole-resistant Aspergillus fumigatus in the environment of northern Italy, May 2011 to June 2012","volume":"19","author":"Prigitano","year":"2014","journal-title":"Euro Surveillance"},{"key":"10.1016\/j.simyco.2021.100115_bib508","doi-asserted-by":"crossref","first-page":"1970","DOI":"10.3389\/fmicb.2019.01970","article-title":"Revealing the virulence potential of clinical and environmental Aspergillus fumigatus isolates using whole-genome sequencing","volume":"10","author":"Pu\u00e9rtolas-Balint","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib509","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1016\/0076-6879(92)16041-H","article-title":"Transformation of filamentous fungi based on hygromycin B and phleomycin resistance markers","volume":"216","author":"Punt","year":"1992","journal-title":"Methods in Enzymology"},{"key":"10.1016\/j.simyco.2021.100115_bib510","doi-asserted-by":"crossref","first-page":"e83","DOI":"10.1093\/nar\/gkz418","article-title":"FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences","volume":"47","author":"Quan","year":"2019","journal-title":"Nucleic Acids Research"},{"key":"10.1016\/j.simyco.2021.100115_bib511","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1128\/IAI.00998-08","article-title":"Toll-like receptor 9 modulates immune responses to Aspergillus fumigatus conidia in immunodeficient and allergic mice","volume":"77","author":"Ramaprakash","year":"2009","journal-title":"Infection and Immunity"},{"key":"10.1016\/j.simyco.2021.100115_bib512","series-title":"The Genus Aspergillus","author":"Raper","year":"1965"},{"key":"10.1016\/j.simyco.2021.100115_bib513","doi-asserted-by":"crossref","first-page":"6060","DOI":"10.1128\/AAC.01017-12","article-title":"First reported case of azole-resistant Aspergillus fumigatus due to the TR\/L98H mutation in Germany","volume":"56","author":"Rath","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib514","doi-asserted-by":"crossref","first-page":"1798","DOI":"10.3389\/fimmu.2019.01798","article-title":"Using interleukin 6 and 8 in blood and bronchoalveolar lavage fluid to predict survival in hematological malignancy patients with suspected pulmonary mold infection","volume":"10","author":"Rawlings","year":"2019","journal-title":"Frontiers in Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib515","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1093\/jac\/dkx458","article-title":"Delivering precision antimicrobial therapy through closed-loop control systems","volume":"73","author":"Rawson","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"issue":"suppl. 2","key":"10.1016\/j.simyco.2021.100115_bib516","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/myc.12224","article-title":"The role of surgical debridement in different clinical manifestations of invasive aspergillosis","volume":"57","author":"Reischies","year":"2014","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib517","doi-asserted-by":"crossref","first-page":"982","DOI":"10.1086\/342384","article-title":"Has antifungal susceptibility testing come of age?","volume":"35","author":"Rex","year":"2002","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib518","doi-asserted-by":"crossref","first-page":"e02088","DOI":"10.1128\/AAC.02088-17","article-title":"Azole resistance of environmental and clinical Aspergillus fumigatus isolates from Switzerland","volume":"62","author":"Riat","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib519","doi-asserted-by":"crossref","first-page":"15699","DOI":"10.1038\/s41598-018-33902-0","article-title":"Human bronchial epithelial cells inhibit Aspergillus fumigatus germination of extracellular conidia via FleA recognition","volume":"8","author":"Richard","year":"2018","journal-title":"Scientific Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib520","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1007\/s12281-018-0321-1","article-title":"Role of serological tests in the diagnosis of mold infections","volume":"12","author":"Richardson","year":"2018","journal-title":"Current Fungal Infection Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib521","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1093\/mmy\/myw116","article-title":"Aspergillus serology: Have we arrived yet?","volume":"55","author":"Richardson","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib522","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1111\/mmi.13887","article-title":"Overview of carbon and nitrogen catabolite metabolism in the virulence of human pathogenic fungi","volume":"107","author":"Ries","year":"2018","journal-title":"Molecular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib523","doi-asserted-by":"crossref","DOI":"10.1016\/j.cmi.2017.04.012","article-title":"A\u00a0prospective international Aspergillus terreus survey: an EFISG, ISHAM and ECMM joint study","volume":"23","author":"Risslegger","year":"2017","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib524","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/jac\/dkz078","article-title":"In\u00a0vitro activity of olorofim (F901318) against clinical isolates of cryptic species of Aspergillus by EUCAST and CLSI methodologies","volume":"74","author":"Rivero-Menendez","year":"2019","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib525","doi-asserted-by":"crossref","first-page":"e00865","DOI":"10.1128\/AAC.00865-19","article-title":"Molecular identification, antifungal susceptibility testing, and mechanisms of azole resistance in Aspergillus species received within a surveillance program on antifungal resistance in Spain","volume":"63","author":"Rivero-Menendez","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib526","doi-asserted-by":"crossref","first-page":"32015","DOI":"10.1007\/s11356-018-3177-6","article-title":"Determination of azole fungal residues in soils and detection of Aspergillus fumigatus-resistant strains in market gardens of Eastern France","volume":"25","author":"Rocchi","year":"2018","journal-title":"Environmental Science and Pollution Research International"},{"key":"10.1016\/j.simyco.2021.100115_bib527","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1046\/j.1365-2885.2003.00457.x","article-title":"Antifungal agents of use in animal health \u2013 practical applications","volume":"26","author":"Rochette","year":"2003","journal-title":"Journal of Veterinary Pharmacology and Therapeutics"},{"key":"10.1016\/j.simyco.2021.100115_bib528","doi-asserted-by":"crossref","first-page":"2559","DOI":"10.1128\/jcm.34.10.2559-2568.1996","article-title":"Multicentric epidemiological study of Aspergillus fumigatus isolates by multilocus enzyme electrophoresis","volume":"34","author":"Rodriguez","year":"1996","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib529","doi-asserted-by":"crossref","first-page":"E1026","DOI":"10.1073\/pnas.1518836113","article-title":"ImmunoPET\/MR imaging allows specific detection of Aspergillus fumigatus lung infection in\u00a0vivo","volume":"113","author":"Rolle","year":"2016","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"10.1016\/j.simyco.2021.100115_bib530","doi-asserted-by":"crossref","first-page":"2470","DOI":"10.1038\/s41467-018-04926-x","article-title":"Antifungal tolerance is a subpopulation effect distinct from resistance and is associated with persistent candidemia","volume":"9","author":"Rosenberg","year":"2018","journal-title":"Nature Communications"},{"key":"10.1016\/j.simyco.2021.100115_bib531","doi-asserted-by":"crossref","first-page":"55","DOI":"10.3390\/jof5030055","article-title":"Invasive aspergillosis by Aspergillus flavus: Epidemiology, diagnosis, antifungal resistance, and management","volume":"5","author":"Rudramurthy","year":"2019","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib532","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01491-16","article-title":"Pharmacodynamics of voriconazole against wild-type and azole-resistant Aspergillus flavus isolates in a nonneutropenic murine model of disseminated aspergillosis","volume":"61","author":"Rudramurthy","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib533","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/j.cmi.2016.09.016","article-title":"Evaluation of the possible influence of trailing and paradoxical effects on the clinical outcome of patients with candidemia","volume":"23","author":"Rueda","year":"2017","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib534","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1186\/s13613-020-00686-4","article-title":"COVID-19-associated invasive pulmonary aspergillosis","volume":"10","author":"Rutsaert","year":"2020","journal-title":"Annals of Intensive Care"},{"key":"10.1016\/j.simyco.2021.100115_bib535","doi-asserted-by":"crossref","first-page":"e00437","DOI":"10.1128\/mBio.00437-19","article-title":"Mutations in hmg1, challenging the paradigm of clinical triazole resistance in Aspergillus fumigatus","volume":"10","author":"Rybak","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib536","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1093\/mmy\/myu006","article-title":"Molecular screening of 246 Portuguese Aspergillus isolates among different clinical and environmental sources","volume":"52","author":"Sabino","year":"2014","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib537","doi-asserted-by":"crossref","first-page":"1677","DOI":"10.3389\/fmicb.2019.01677","article-title":"The emergence of rare clinical Aspergillus species in Qatar: Molecular characterization and antifungal susceptibility profiles","volume":"10","author":"Salah","year":"2019","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib538","doi-asserted-by":"crossref","first-page":"1532","DOI":"10.1128\/AAC.01436-12","article-title":"MIC values of voriconazole are predictive of treatment results in murine infections by Aspergillus terreus species complex","volume":"57","author":"Salas","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib539","doi-asserted-by":"crossref","first-page":"1546","DOI":"10.1016\/j.cmi.2019.04.027","article-title":"Multicentre study to determine the Etest epidemiological cut-off values of antifungal drugs in Candida spp. and Aspergillus fumigatus species complex","volume":"25","author":"Sals\u00e9","year":"2019","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib540","doi-asserted-by":"crossref","first-page":"2223","DOI":"10.3389\/fmicb.2018.02223","article-title":"Evaluation of galactomannan testing, the Aspergillus-specific lateral-flow device test and levels of cytokines in bronchoalveolar lavage fluid for diagnosis of chronic pulmonary aspergillosis","volume":"9","author":"Salzer","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib541","doi-asserted-by":"crossref","first-page":"147","DOI":"10.3114\/sim.2007.59.14","article-title":"Polyphasic taxonomy of Aspergillus section Fumigati and its teleomorph Neosartorya","volume":"59","author":"Samson","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib542","series-title":"Food and Indoor Fungi","author":"Samson","year":"2019"},{"key":"10.1016\/j.simyco.2021.100115_bib543","doi-asserted-by":"crossref","first-page":"129","DOI":"10.3114\/sim.2007.59.13","article-title":"Diagnostic tools to identify black aspergilli","volume":"59","author":"Samson","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib544","doi-asserted-by":"crossref","first-page":"39","DOI":"10.3114\/sim.2011.69.04","article-title":"New species in Aspergillus section Terrei","volume":"69","author":"Samson","year":"2011","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib545","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/j.simyco.2014.07.004","article-title":"Phylogeny, identification and nomenclature of the genus Aspergillus","volume":"78","author":"Samson","year":"2014","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib546","doi-asserted-by":"crossref","first-page":"21","DOI":"10.4148\/1941-4765.1317","article-title":"Efficient transformation of Aspergillus nidulans by electroporation of germinated conidia","volume":"43","author":"S\u00e1nchez","year":"1996","journal-title":"Fungal Genetics Reports"},{"key":"10.1016\/j.simyco.2021.100115_bib547","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1128\/JCM.01640-16","article-title":"Identification of molds by matrix-assisted laser desorption ionization-time of flight mass spectrometry","volume":"55","author":"Sanguinetti","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib548","doi-asserted-by":"crossref","first-page":"203","DOI":"10.3314\/jjmm.43.203","article-title":"A\u00a0new experimental murine aspergillosis model to identify strains of Aspergillus fumigatus with reduced virulence","volume":"43","author":"Sarfati","year":"2002","journal-title":"Nihon Ishinkin Gakkai Zasshi"},{"key":"10.1016\/j.simyco.2021.100115_bib549","doi-asserted-by":"crossref","first-page":"e00779","DOI":"10.1128\/mBio.00779-19","article-title":"Stress-induced changes in the lipid microenvironment of \u03b2-(1,3)-d-glucan synthase cause clinically important echinocandin resistance in Aspergillus fumigatus","volume":"10","author":"Satish","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib550","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1007\/BF02202064","article-title":"Experimental pulmonary aspergilloma","volume":"32","author":"Sawasaki","year":"1967","journal-title":"Mycopathologia et Mycologia Applicata"},{"key":"10.1016\/j.simyco.2021.100115_bib551","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1111\/myc.12788","article-title":"The diagnosis and treatment of invasive aspergillosis in Dutch haematology units facing a rapidly increasing prevalence of azole-resistance. A nationwide survey and rationale for the DB\u2013MSG 002 study protocol","volume":"61","author":"Schauwvlieghe","year":"2018","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib552","doi-asserted-by":"crossref","first-page":"782","DOI":"10.1016\/S2213-2600(18)30274-1","article-title":"Invasive aspergillosis in patients admitted to the intensive care unit with severe influenza: a retrospective cohort study","volume":"6","author":"Schauwvlieghe","year":"2018","journal-title":"Lancet Respiratory Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib553","doi-asserted-by":"crossref","first-page":"3047","DOI":"10.1093\/jac\/dkx262","article-title":"Detection of azole-susceptible and azole-resistant Aspergillus coinfection by cyp51A PCR amplicon melting curve analysis","volume":"72","author":"Schauwvlieghe","year":"2017","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib554","doi-asserted-by":"crossref","first-page":"1676","DOI":"10.1128\/AAC.32.11.1676","article-title":"Aerosol amphotericin B is effective for prophylaxis and therapy in a rat model of pulmonary aspergillosis","volume":"32","author":"Schmitt","year":"1988","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib555","doi-asserted-by":"crossref","first-page":"878","DOI":"10.1128\/EC.00020-10","article-title":"Evaluation of lysine biosynthesis as an antifungal drug target: biochemical characterization of Aspergillus fumigatus homocitrate synthase and virulence studies","volume":"9","author":"Schobel","year":"2010","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib556","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1016\/bs.mie.2018.04.010","article-title":"Metabolic engineering of Saccharomyces cerevisiae using a trifunctional CRISPR\/Cas system for simultaneous gene activation, interference, and deletion","volume":"608","author":"Schultz","year":"2018","journal-title":"Methods in Enzymology"},{"key":"10.1016\/j.simyco.2021.100115_bib557","doi-asserted-by":"crossref","first-page":"1760","DOI":"10.1093\/cid\/ciaa007","article-title":"High rates of influenza-associated invasive pulmonary aspergillosis may not be universal: A retrospective cohort study from Alberta, Canada","volume":"71","author":"Schwartz","year":"2020","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib558","doi-asserted-by":"crossref","first-page":"1955","DOI":"10.3389\/fmicb.2020.01955","article-title":"Phagolysosomal survival enables non-lytic hyphal escape and ramification through lung epithelium during Aspergillus fumigatus infection","volume":"11","author":"Seidel","year":"2020","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib559","doi-asserted-by":"crossref","first-page":"1475","DOI":"10.3389\/fphar.2018.01475","article-title":"Animal models in the pathophysiology of cystic fibrosis","volume":"9","author":"Semaniakou","year":"2018","journal-title":"Frontiers in pharmacology"},{"key":"10.1016\/j.simyco.2021.100115_bib560","doi-asserted-by":"crossref","first-page":"2047","DOI":"10.1093\/jac\/dky147","article-title":"Prevalence and characterization of azole-resistant Aspergillus fumigatus in patients with cystic fibrosis: a prospective multicentre study in Germany","volume":"73","author":"Seufert","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib561","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/S1097-2765(02)00822-5","article-title":"Accelerated degradation of HMG CoA reductase mediated by binding of insig-1 to its sterol-sensing domain","volume":"11","author":"Sever","year":"2003","journal-title":"Molecular Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib562","doi-asserted-by":"crossref","first-page":"e00548","DOI":"10.1128\/AAC.00548-19","article-title":"Elevated prevalence of azole-resistant Aspergillus fumigatus in urban versus rural environments in the United Kingdom","volume":"63","author":"Sewell","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib563","doi-asserted-by":"crossref","first-page":"2855","DOI":"10.1128\/AAC.04907-14","article-title":"Pharmacodynamics of isavuconazole in an Aspergillus fumigatus mouse infection model","volume":"59","author":"Seyedmousavi","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib564","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1093\/jac\/dks402","article-title":"Efficacy and pharmacodynamics of voriconazole combined with anidulafungin in azole-resistant invasive aspergillosis","volume":"68","author":"Seyedmousavi","year":"2013","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib565","doi-asserted-by":"crossref","first-page":"832","DOI":"10.3201\/eid1905.130075","article-title":"Azole-resistant Aspergillus fumigatus, Iran","volume":"19","author":"Seyedmousavi","year":"2013","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib566","doi-asserted-by":"crossref","first-page":"ofy213","DOI":"10.1093\/ofid\/ofy213","article-title":"Emerging Aspergillus species almost exclusively associated with primary immunodeficiencies","volume":"5","author":"Seyedmousavi","year":"2018","journal-title":"Open Forum Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib567","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.drup.2014.06.001","article-title":"The role of azoles in the management of azole-resistant aspergillosis: from the bench to the bedside","volume":"17","author":"Seyedmousavi","year":"2014","journal-title":"Drug Resistance Updates"},{"key":"10.1016\/j.simyco.2021.100115_bib568","doi-asserted-by":"crossref","first-page":"1487","DOI":"10.1128\/AAC.03850-14","article-title":"Posaconazole prophylaxis in experimental azole-resistant invasive pulmonary aspergillosis","volume":"59","author":"Seyedmousavi","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib569","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/j.jgar.2015.01.005","article-title":"Triazole-resistant Aspergillus fumigatus harbouring G54 mutation: Is it de novo or environmentally acquired?","volume":"3","author":"Sharma","year":"2015","journal-title":"Journal of Global Antimicrobial Resistance"},{"key":"10.1016\/j.simyco.2021.100115_bib570","doi-asserted-by":"crossref","first-page":"103265","DOI":"10.1016\/j.fgb.2019.103265","article-title":"Genomic perspective of triazole resistance in clinical and environmental Aspergillus fumigatus isolates without cyp51A mutations","volume":"132","author":"Sharma","year":"2019","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib571","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0017509","article-title":"PrtT-regulated proteins secreted by Aspergillus fumigatus activate MAPK signaling in exposed A549 lung cells leading to necrotic cell death","volume":"6","author":"Sharon","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib572","doi-asserted-by":"crossref","first-page":"1625","DOI":"10.1080\/21505594.2018.1526531","article-title":"Innate humoral immune defences in mammals and insects: The same, with differences?","volume":"9","author":"Sheehan","year":"2018","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib573","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004378","article-title":"Myeloid derived hypoxia inducible factor 1-alpha is required for protection against pulmonary Aspergillus fumigatus infection","volume":"10","author":"Shepardson","year":"2014","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib574","doi-asserted-by":"crossref","first-page":"1908","DOI":"10.1128\/AAC.48.5.1908-1911.2004","article-title":"Novel inhalational murine model of invasive pulmonary aspergillosis","volume":"48","author":"Sheppard","year":"2004","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib575","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1007\/s40262-019-00735-7","article-title":"Voriconazole: A review of population pharmacokinetic analyses","volume":"58","author":"Shi","year":"2019","journal-title":"Clinical Pharmacokinetics"},{"key":"10.1016\/j.simyco.2021.100115_bib576","doi-asserted-by":"crossref","first-page":"3559","DOI":"10.4049\/jimmunol.1401258","article-title":"Axl receptor blockade protects from invasive pulmonary aspergillosis in mice","volume":"193","author":"Shibata","year":"2014","journal-title":"Journal of Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib577","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1097\/01.tp.0000202421.94822.f7","article-title":"Combination of voriconazole and caspofungin as primary therapy for invasive aspergillosis in solid organ transplant recipients: a prospective, multicenter, observational study","volume":"81","author":"Singh","year":"2006","journal-title":"Transplantation"},{"key":"10.1016\/j.simyco.2021.100115_bib578","doi-asserted-by":"crossref","first-page":"1611","DOI":"10.1093\/jac\/dku023","article-title":"Susceptibility breakpoints and target values for therapeutic drug monitoring of voriconazole and Aspergillus fumigatus in an in\u00a0vitro pharmacokinetic\/pharmacodynamic model","volume":"69","author":"Siopi","year":"2014","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib579","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1128\/AAC.01688-15","article-title":"Bioassay for determining voriconazole serum levels in patients receiving combination therapy with echinocandins","volume":"60","author":"Siopi","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib580","doi-asserted-by":"crossref","first-page":"1714","DOI":"10.1128\/JCM.00044-17","article-title":"Comparative evaluation of Sensititre YeastOne and CLSI M38-A2 reference method for antifungal susceptibility testing of Aspergillus spp. against echinocandins","volume":"55","author":"Siopi","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib581","doi-asserted-by":"crossref","first-page":"3181","DOI":"10.1093\/jac\/dkaa316","article-title":"Nationwide surveillance of azole-resistant Aspergillus fumigatus environmental isolates in Greece: detection of pan-azole resistance associated with the TR46\/Y121F\/T289A cyp51A mutation","volume":"75","author":"Siopi","year":"2020","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib582","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1080\/00275514.2019.1698923","article-title":"Increasing the species diversity in the Aspergillus section Nidulantes: Six novel species mainly from the indoor environment","volume":"112","author":"Sklen\u00e1\u0159","year":"2020","journal-title":"Mycologia"},{"key":"10.1016\/j.simyco.2021.100115_bib583","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1016\/j.simyco.2017.09.002","article-title":"Phylogeny of xerophilic aspergilli (subgenus Aspergillus) and taxonomic revision of section Restricti","volume":"88","author":"Sklen\u00e1\u0159","year":"2017","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib584","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/S1087-1845(02)00016-6","article-title":"Increased expression of a novel Aspergillus fumigatus ABC transporter gene, atrF, in the presence of itraconazole in an itraconazole resistant clinical isolate","volume":"36","author":"Slaven","year":"2002","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib585","doi-asserted-by":"crossref","first-page":"1155","DOI":"10.12998\/wjcc.v6.i16.1155","article-title":"Renal aspergillosis in a liver transplant patient: A case report and review of literature","volume":"6","author":"Smolovic","year":"2018","journal-title":"World Journal of Clinical Cases"},{"key":"10.1016\/j.simyco.2021.100115_bib586","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0031801","article-title":"Triazole fungicides can induce cross-resistance to medical triazoles in Aspergillus fumigatus","volume":"7","author":"Snelders","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib587","doi-asserted-by":"crossref","first-page":"4053","DOI":"10.1128\/AEM.00231-09","article-title":"Possible environmental origin of resistance of Aspergillus fumigatus to medical triazoles","volume":"75","author":"Snelders","year":"2009","journal-title":"Applied and Environmental Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib588","doi-asserted-by":"crossref","first-page":"e219","DOI":"10.1371\/journal.pmed.0050219","article-title":"Emergence of azole resistance in Aspergillus fumigatus and spread of a single resistance mechanism","volume":"5","author":"Snelders","year":"2008","journal-title":"PLoS Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib589","doi-asserted-by":"crossref","first-page":"3729","DOI":"10.1007\/s00253-016-8072-9","article-title":"Damage resistance protein (Dap) contributes to azole resistance in a sterol-regulatory-element-binding protein SrbA-dependent way","volume":"101","author":"Song","year":"2017","journal-title":"Applied Microbiology and Biotechnology"},{"key":"10.1016\/j.simyco.2021.100115_bib590","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.01919-15","article-title":"The Aspergillus fumigatus damage resistance protein family coordinately regulates ergosterol biosynthesis and azole susceptibility","volume":"7","author":"Song","year":"2016","journal-title":"mBio"},{"key":"10.1016\/j.simyco.2021.100115_bib591","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0103113","article-title":"Incidence of Cyp51 A key mutations in Aspergillus fumigatus \u2013 a study on primary clinical samples of immunocompromised patients in the period of 1995\u20132013","volume":"9","author":"Spiess","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.simyco.2021.100115_bib592","doi-asserted-by":"crossref","first-page":"3905","DOI":"10.1128\/AAC.05902-11","article-title":"Development of novel PCR assays to detect azole resistance-mediating mutations of the Aspergillus fumigatus cyp51A gene in primary clinical samples from neutropenic patients","volume":"56","author":"Spiess","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib593","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1086\/525044","article-title":"Gliotoxin production in Aspergillus fumigatus contributes to host-specific differences in virulence","volume":"197","author":"Spikes","year":"2008","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib594","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1016\/j.cmi.2015.09.009","article-title":"Prospective multicentre PCR-based Aspergillus DNA screening in high-risk patients with and without primary antifungal mould prophylaxis","volume":"22","author":"Springer","year":"2016","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib595","doi-asserted-by":"crossref","first-page":"382","DOI":"10.1038\/nature25974","article-title":"Recognition of DHN-melanin by a C-type lectin receptor is required for immunity to Aspergillus","volume":"555","author":"Stappers","year":"2018","journal-title":"Nature"},{"key":"10.1016\/j.simyco.2021.100115_bib596","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1002\/yea.3303","article-title":"Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications","volume":"35","author":"Stavrou","year":"2018","journal-title":"Yeast"},{"key":"10.1016\/j.simyco.2021.100115_bib597","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1534\/genetics.120.303549","article-title":"Variation among biosynthetic gene clusters, secondary metabolite profiles, and cards of virulence across Aspergillus species","volume":"216","author":"Steenwyk","year":"2020","journal-title":"Genetics"},{"key":"10.1016\/j.simyco.2021.100115_bib598","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1080\/13693780410001712034","article-title":"Value of an inhalational model of invasive aspergillosis","volume":"42","author":"Steinbach","year":"2004","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib599","doi-asserted-by":"crossref","first-page":"1522","DOI":"10.1093\/jac\/dku566","article-title":"Emergence of azole-resistant invasive aspergillosis in HSCT recipients in Germany","volume":"70","author":"Steinmann","year":"2015","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib600","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1128\/IAI.73.1.114-125.2005","article-title":"The pathogenesis of fatal outcome in murine pulmonary aspergillosis depends on the neutrophil depletion strategy","volume":"73","author":"Stephens-Romero","year":"2005","journal-title":"Infection and Immunity"},{"key":"10.1016\/j.simyco.2021.100115_bib601","doi-asserted-by":"crossref","first-page":"751","DOI":"10.3109\/08820139.2011.614307","article-title":"Aspergillosis in the \u201cnonimmunocompromised\u201d host","volume":"40","author":"Stevens","year":"2011","journal-title":"Immunological Investigations"},{"key":"10.1016\/j.simyco.2021.100115_bib602","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1080\/mmy.38.3.209.212","article-title":"Effect of grapefruit juice on serum voriconazole concentrations in the mouse","volume":"38","author":"Sugar","year":"2000","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib603","doi-asserted-by":"crossref","first-page":"1798","DOI":"10.1128\/AEM.71.4.1798-1802.2005","article-title":"Agrobacterium tumefaciens-mediated transformation of Aspergillus fumigatus: an efficient tool for insertional mutagenesis and targeted gene disruption","volume":"71","author":"Sugui","year":"2005","journal-title":"Applied and Environmental Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib604","doi-asserted-by":"crossref","first-page":"1562","DOI":"10.1128\/EC.00141-07","article-title":"Gliotoxin is a virulence factor of Aspergillus fumigatus: gliP deletion attenuates virulence in mice immunosuppressed with hydrocortisone","volume":"6","author":"Sugui","year":"2007","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib605","doi-asserted-by":"crossref","first-page":"3707","DOI":"10.1128\/JCM.01704-14","article-title":"Genetic relatedness versus biological compatibility between Aspergillus fumigatus and related species","volume":"52","author":"Sugui","year":"2014","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib606","doi-asserted-by":"crossref","first-page":"3111","DOI":"10.1038\/nprot.2006.405","article-title":"Fusion PCR and gene targeting in Aspergillus nidulans","volume":"1","author":"Szewczyk","year":"2006","journal-title":"Nature Protocols"},{"key":"10.1016\/j.simyco.2021.100115_bib607","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1093\/mmy\/myw117","article-title":"Aspergillus in chronic lung disease: Modeling what goes on in the airways","volume":"55","author":"Takazono","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib608","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1093\/mmy\/myz072","article-title":"Species identification, antifungal susceptibility, and clinical feature association of Aspergillus section Nigri isolates from the lower respiratory tract","volume":"58","author":"Takeda","year":"2020","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib609","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/mmy\/myx016","article-title":"One-health pathogens in the Aspergillus viridinutans complex","volume":"56","author":"Talbot","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib610","doi-asserted-by":"crossref","first-page":"2347","DOI":"10.1093\/jac\/dky187","article-title":"Surveillance for azole resistance in clinical and environmental isolates of Aspergillus fumigatus in Australia and cyp51A homology modelling of azole-resistant isolates","volume":"73","author":"Talbot","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib611","first-page":"429","article-title":"Prevalence of azole-resistant Aspergillus fumigatus in the environment of Thailand","volume":"55","author":"Tangwattanachuleeporn","year":"2017","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib612","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1016\/j.simyco.2017.11.001","article-title":"Aspergillus subgenus Polypaecilum from the built environment","volume":"88","author":"Tanney","year":"2017","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib613","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1111\/cts.12716","article-title":"Itraconazole increases ibrutinib exposure 10-fold and reduces interindividual variation \u2013 A potentially beneficial drug-drug interaction","volume":"13","author":"Tapaninen","year":"2020","journal-title":"Clinical and Translational Science"},{"key":"10.1016\/j.simyco.2021.100115_bib614","doi-asserted-by":"crossref","first-page":"4870","DOI":"10.1128\/AAC.00514-12","article-title":"Correlation between triazole treatment history and susceptibility in clinically isolated Aspergillus fumigatus","volume":"56","author":"Tashiro","year":"2012","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib615","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1111\/myc.13019","article-title":"Genetic diversity and antifungal susceptibility patterns of Aspergillus nidulans complex obtained from clinical and environmental sources","volume":"63","author":"Tavakoli","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib616","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1016\/j.jim.2014.03.023","article-title":"Animal models for influenza virus pathogenesis, transmission, and immunology","volume":"410","author":"Thangavel","year":"2014","journal-title":"Journal of Immunological Methods"},{"key":"10.1016\/j.simyco.2021.100115_bib617","series-title":"The Aspergilli","author":"Thom","year":"1926"},{"key":"10.1016\/j.simyco.2021.100115_bib618","series-title":"Manual of the Aspergilli","author":"Thom","year":"1945"},{"key":"10.1016\/j.simyco.2021.100115_bib619","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1128\/JCM.05946-11","article-title":"Cross-reactivity of Fusarium spp. in the Aspergillus galactomannan enzyme-linked immunosorbent assay","volume":"50","author":"Tortorano","year":"2012","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib620","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1016\/j.jiac.2016.12.004","article-title":"First clinical isolation report of azole-resistant Aspergillus fumigatus with TR34\/L98H-type mutation in Japan","volume":"23","author":"Toyotome","year":"2017","journal-title":"Journal of Infection and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib621","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1007\/s10096-007-0361-x","article-title":"Fatal brain infection caused by Aspergillus glaucus in an immunocompetent patient identified by sequencing of the ribosomal 18S\u201328S internal transcribed spacer","volume":"26","author":"Traboulsi","year":"2007","journal-title":"European Journal of Clinical Microbiology & Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib622","doi-asserted-by":"crossref","first-page":"906","DOI":"10.1128\/JCM.43.2.906-908.2005","article-title":"Detection of Aspergillus fumigatus and a mutation that confers reduced susceptibility to itraconazole and posaconazole by real-time PCR and pyrosequencing","volume":"43","author":"Trama","year":"2005","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib623","doi-asserted-by":"crossref","first-page":"4782","DOI":"10.1128\/AAC.01083-10","article-title":"Observational study of the clinical efficacy of voriconazole and its relationship to plasma concentrations in patients","volume":"55","author":"Troke","year":"2011","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib624","doi-asserted-by":"crossref","first-page":"131","DOI":"10.3390\/jof4040131","article-title":"Environmental isolates of multi-azole-resistant Aspergillus spp. in Southern Italy","volume":"4","author":"Trovato","year":"2018","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib625","doi-asserted-by":"crossref","first-page":"1395","DOI":"10.3389\/fmicb.2018.01395","article-title":"Determination of the prevalence of triazole resistance in environmental Aspergillus fumigatus strains isolated in South Wales, UK","volume":"9","author":"Tsitsopoulou","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib626","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1093\/mmy\/myz003","article-title":"Prospective multicenter surveillance of clinically isolated Aspergillus species revealed azole-resistant Aspergillus fumigatus isolates with TR34\/L98H mutation in the Kyoto and Shiga regions of Japan","volume":"57","author":"Tsuchido","year":"2019","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib627","doi-asserted-by":"crossref","first-page":"e01216","DOI":"10.1128\/AAC.01216-18","article-title":"Contributions of yap1 mutation and subsequent atrF upregulation to voriconazole resistance in Aspergillus flavus","volume":"62","author":"Ukai","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib628","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.1016\/j.cmi.2018.01.002","article-title":"Diagnosis and management of Aspergillus diseases: executive summary of the 2017 ESCMID-ECMM-ERS guideline","volume":"24","author":"Ullmann","year":"2018","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib629","doi-asserted-by":"crossref","first-page":"e00894","DOI":"10.1128\/AAC.00894-18","article-title":"CRISPR\/Cas9 genome editing to demonstrate the contribution of Cyp51A Gly138Ser to azole resistance in Aspergillus fumigatus","volume":"62","author":"Umeyama","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib630","doi-asserted-by":"crossref","first-page":"3590","DOI":"10.1128\/IAI.00359-15","article-title":"Evolution of the immune response to chronic airway colonization with Aspergillus fumigatus hyphae","volume":"83","author":"Urb","year":"2015","journal-title":"Infection and Immunity"},{"key":"10.1016\/j.simyco.2021.100115_bib631","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1016\/j.mib.2020.09.011","article-title":"Eradicating, retaining, balancing, swarming, shuttling and dumping: a myriad of tasks for neutrophils during fungal infection","volume":"58","author":"Urban","year":"2020","journal-title":"Current Opinion in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib632","doi-asserted-by":"crossref","first-page":"1709","DOI":"10.1128\/IAI.00074-13","article-title":"Gain-of-function mutations in PDR1, a regulator of antifungal drug resistance in Candida glabrata, control adherence to host cells","volume":"81","author":"Vale-Silva","year":"2013","journal-title":"Infection and Immunity"},{"key":"10.1016\/j.simyco.2021.100115_bib633","doi-asserted-by":"crossref","first-page":"7866","DOI":"10.1128\/AAC.01594-15","article-title":"Fitness studies of azole-resistant strains of Aspergillus fumigatus","volume":"59","author":"Valsecchi","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib634","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1164\/rccm.202004-1038LE","article-title":"COVID-19-associated pulmonary aspergillosis","volume":"202","author":"van Arkel","year":"2020","journal-title":"American Journal of Respiratory and Critical Care Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib635","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1038\/nrmicro.2017.90","article-title":"Aspergillus fumigatus morphology and dynamic host interactions","volume":"15","author":"van de Veerdonk","year":"2017","journal-title":"Nature Reviews Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib636","doi-asserted-by":"crossref","first-page":"4999","DOI":"10.1128\/AAC.00707-13","article-title":"Dried blood spot analysis suitable for therapeutic drug monitoring of voriconazole, fluconazole, and posaconazole","volume":"57","author":"van der Elst","year":"2013","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib637","doi-asserted-by":"crossref","first-page":"158","DOI":"10.3201\/eid2201.151308","article-title":"Azole resistance of Aspergillus fumigatus in immunocompromised patients with invasive aspergillosis","volume":"22","author":"van der Linden","year":"2016","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib638","doi-asserted-by":"crossref","first-page":"1041","DOI":"10.3201\/eid2106.140717","article-title":"Prospective multicenter international surveillance of azole resistance in Aspergillus fumigatus","volume":"21","author":"van der Linden","year":"2015","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib639","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1093\/cid\/cit320","article-title":"Aspergillosis due to voriconazole highly resistant Aspergillus fumigatus and recovery of genetically related resistant isolates from domiciles","volume":"57","author":"van der Linden","year":"2013","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib640","doi-asserted-by":"crossref","first-page":"1478","DOI":"10.1128\/JCM.02221-09","article-title":"Rapid diagnosis of azole-resistant aspergillosis by direct PCR using tissue specimens","volume":"48","author":"van der Linden","year":"2010","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib641","doi-asserted-by":"crossref","first-page":"1846","DOI":"10.3201\/eid1710.110226","article-title":"Clinical implications of azole resistance in Aspergillus fumigatus, The Netherlands, 2007\u20132009","volume":"17","author":"van der Linden","year":"2011","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib642","doi-asserted-by":"crossref","first-page":"12","DOI":"10.3390\/jof6010012","article-title":"Detecting azole-antifungal resistance in Aspergillus fumigatus by pyrosequencing","volume":"6","author":"van der Torre","year":"2020","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib643","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.02465-17","article-title":"A\u00a0population pharmacokinetic model for a solid oral tablet formulation of posaconazole","volume":"62","author":"van Iersel","year":"2018","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib644","article-title":"Emerging aspergillosis by azole-resistant Aspergillus fumigatus at an intensive care unit in the Netherlands, 2010 to 2013","volume":"21","author":"van Paassen","year":"2016","journal-title":"Euro Surveillance"},{"key":"10.1016\/j.simyco.2021.100115_bib645","doi-asserted-by":"crossref","first-page":"89","DOI":"10.3114\/sim.2007.59.11","article-title":"Taxonomic revision of Aspergillus section Clavati based on molecular, morphological and physiological data","volume":"59","author":"Varga","year":"2007","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib646","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3114\/sim.2011.69.01","article-title":"New and revisited species in Aspergillus section Nigri","volume":"69","author":"Varga","year":"2011","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib647","doi-asserted-by":"crossref","first-page":"197","DOI":"10.5598\/imafungus.2010.01.02.13","article-title":"Aspergillus sect. Aeni sect. nov., a new section of the genus for A.\u00a0karnatakaensis sp. nov. and some allied fungi","volume":"1","author":"Varga","year":"2010","journal-title":"IMA Fungus"},{"key":"10.1016\/j.simyco.2021.100115_bib648","doi-asserted-by":"crossref","first-page":"630","DOI":"10.1128\/EC.00425-07","article-title":"Aspergillus calidoustus sp. nov., causative agent of human infections previously assigned to Aspergillus ustus","volume":"7","author":"Varga","year":"2008","journal-title":"Eukaryotic Cell"},{"key":"10.1016\/j.simyco.2021.100115_bib649","doi-asserted-by":"crossref","first-page":"e00420","DOI":"10.1128\/JCM.00420-18","article-title":"Proof of concept for MBT ASTRA, a rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS)-based method to detect caspofungin resistance in Candida albicans and Candida glabrata","volume":"56","author":"Vatanshenassan","year":"2018","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib650","doi-asserted-by":"crossref","first-page":"20","DOI":"10.3389\/fcimb.2019.00020","article-title":"Candida auris identification and rapid antifungal susceptibility testing against echinocandins by MALDI-TOF MS","volume":"9","author":"Vatanshenassan","year":"2019","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib651","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.1128\/AAC.01130-15","article-title":"Molecular characterization of a voriconazole-resistant, posaconazole-susceptible Aspergillus fumigatus isolate in a lung transplant recipient in the United States","volume":"60","author":"Vazquez","year":"2016","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib652","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1016\/j.cmi.2019.11.019","article-title":"High-volume culture and quantitative real-time PCR for the detection of Aspergillus in sputum","volume":"26","author":"Vergidis","year":"2020","journal-title":"Clinical Microbiology and Infection"},{"key":"10.1016\/j.simyco.2021.100115_bib653","doi-asserted-by":"crossref","first-page":"4569","DOI":"10.1128\/AAC.00233-15","article-title":"Nationwide surveillance of azole resistance in Aspergillus diseases","volume":"59","author":"Vermeulen","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib654","first-page":"20326","article-title":"Azole-resistant Aspergillus fumigatus due to TR46\/Y121F\/T289A mutation emerging in Belgium, July 2012","volume":"17","author":"Vermeulen","year":"2012","journal-title":"Euro Surveillance"},{"key":"10.1016\/j.simyco.2021.100115_bib655","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.drup.2015.08.001","article-title":"International expert opinion on the management of infection caused by azole-resistant Aspergillus fumigatus","volume":"21\u201322","author":"Verweij","year":"2015","journal-title":"Drug Resistance Updates"},{"key":"10.1016\/j.simyco.2021.100115_bib656","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1093\/cid\/civ885","article-title":"Azole resistance in Aspergillus fumigatus: Can we retain the clinical use of mold\u2013active antifungal azoles?","volume":"62","author":"Verweij","year":"2016","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib657","doi-asserted-by":"crossref","first-page":"e53","DOI":"10.1016\/S2666-5247(20)30027-6","article-title":"Diagnosing COVID-19-associated pulmonary aspergillosis","volume":"1","author":"Verweij","year":"2020","journal-title":"Lancet Microbe"},{"key":"10.1016\/j.simyco.2021.100115_bib658","doi-asserted-by":"crossref","first-page":"1481","DOI":"10.1056\/NEJMc061720","article-title":"Multiple-triazole-resistant aspergillosis","volume":"356","author":"Verweij","year":"2007","journal-title":"New England Journal of Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib659","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1093\/jac\/42.3.389","article-title":"In-vitro activities of amphotericin B, itraconazole and voriconazole against 150 clinical and environmental Aspergillus fumigatus isolates","volume":"42","author":"Verweij","year":"1998","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib660","doi-asserted-by":"crossref","first-page":"789","DOI":"10.1016\/S1473-3099(09)70265-8","article-title":"Azole resistance in Aspergillus fumigatus: a side-effect of environmental fungicide use?","volume":"9","author":"Verweij","year":"2009","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib661","doi-asserted-by":"crossref","first-page":"2648","DOI":"10.1128\/JCM.40.7.2648-2650.2002","article-title":"Nationwide survey of in\u00a0vitro activities of itraconazole and voriconazole against clinical Aspergillus fumigatus isolates cultured between 1945 and 1998","volume":"40","author":"Verweij","year":"2002","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib662","doi-asserted-by":"crossref","first-page":"e251","DOI":"10.1016\/S1473-3099(16)30138-4","article-title":"In-host adaptation and acquired triazole resistance in Aspergillus fumigatus: a dilemma for clinical management","volume":"16","author":"Verweij","year":"2016","journal-title":"Lancet Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib663","doi-asserted-by":"crossref","first-page":"1688","DOI":"10.1038\/s41588-018-0246-1","article-title":"Investigation of inter- and intra-species variation through genome sequencing of Aspergillus section Nigri","volume":"50","author":"Vesth","year":"2018","journal-title":"Nature Genetics"},{"key":"10.1016\/j.simyco.2021.100115_bib664","doi-asserted-by":"crossref","first-page":"838","DOI":"10.1093\/mmy\/myx115","article-title":"Identification of clinical isolates of Aspergillus, including cryptic species, by matrix assisted laser desorption ionization time-of-flight mass spectrometry (MALDI\u2013TOF MS)","volume":"56","author":"Vidal-Acu\u00f1a","year":"2018","journal-title":"Medical Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib665","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.simyco.2014.07.001","article-title":"Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati)","volume":"78","author":"Visagie","year":"2014","journal-title":"Studies in Mycology"},{"key":"10.1016\/j.simyco.2021.100115_bib666","doi-asserted-by":"crossref","first-page":"803","DOI":"10.1086\/423389","article-title":"Combination therapy for invasive aspergillosis","volume":"39","author":"Viscoli","year":"2004","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib667","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1042\/CS20130182","article-title":"Recent advances in pre-clinical mouse models of COPD","volume":"126","author":"Vlahos","year":"2014","journal-title":"Clinical Science"},{"key":"10.1016\/j.simyco.2021.100115_bib668","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1159\/000196477","article-title":"Pulmonary aspergillosis: early diagnosis improves survival","volume":"62","author":"von Eiff","year":"1995","journal-title":"Respiration"},{"key":"10.1016\/j.simyco.2021.100115_bib669","doi-asserted-by":"crossref","first-page":"5","DOI":"10.3390\/jof4010005","article-title":"Recent insights into the paradoxical efffect of echinocandins","volume":"4","author":"Wagener","year":"2017","journal-title":"Journal of Fungi"},{"key":"10.1016\/j.simyco.2021.100115_bib670","doi-asserted-by":"crossref","first-page":"e52","DOI":"10.1097\/LBR.0000000000000681","article-title":"American Association for Bronchology and Interventional Pulmonology (AABIP) statement on the use of bronchoscopy and respiratory specimen collection in patients with suspected or confirmed COVID-19 infection","volume":"27","author":"Wahidi","year":"2020","journal-title":"Journal of Bronchology & Interventional Pulmonology"},{"key":"10.1016\/j.simyco.2021.100115_bib671","doi-asserted-by":"crossref","first-page":"5932","DOI":"10.1128\/AAC.00862-15","article-title":"Caspofungin treatment of Aspergillus fumigatus results in ChsG\u2013dependent upregulation of chitin synthesis and the formation of chitin-rich microcolonies","volume":"59","author":"Walker","year":"2015","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib672","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1001\/jama.2020.1585","article-title":"Clinical characteristics of 138 hospitalized patients with 2019 novel coronavirus-infected pneumonia in Wuhan, China","volume":"323","author":"Wang","year":"2020","journal-title":"JAMA"},{"key":"10.1016\/j.simyco.2021.100115_bib673","doi-asserted-by":"crossref","first-page":"12","DOI":"10.3382\/ps.2013-03541","article-title":"Mutations in the Cyp51A gene and susceptibility to itraconazole in Aspergillus fumigatus isolated from avian farms in France and China","volume":"93","author":"Wang","year":"2014","journal-title":"Poultry Science"},{"key":"10.1016\/j.simyco.2021.100115_bib674","doi-asserted-by":"crossref","first-page":"1400","DOI":"10.1099\/jmm.0.000590","article-title":"Innate and adaptive immune response to chronic pulmonary infection of hyphae of Aspergillus fumigatus in a new murine model","volume":"66","author":"Wang","year":"2017","journal-title":"Journal of Medical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib675","doi-asserted-by":"crossref","first-page":"e00780","DOI":"10.1128\/JCM.00780-18","article-title":"Comparison of the sensititre YeastOne and CLSI M38-A2 microdilution methods in determining the activity of amphotericin B, itraconazole, voriconazole, and posaconazole against Aspergillus species","volume":"56","author":"Wang","year":"2018","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib676","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1111\/1462-2920.13988","article-title":"Prevalence, mechanisms and genetic relatedness of the human pathogenic fungus Aspergillus fumigatus exhibiting resistance to medical azoles in the environment of Taiwan","volume":"20","author":"Wang","year":"2018","journal-title":"Environmental Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib677","doi-asserted-by":"crossref","first-page":"e00604","DOI":"10.1128\/JCM.00604-19","article-title":"A\u00a0novel broad allele-specific TaqMan real-time PCR method to detect triazole-resistant strains of Aspergillus fumigatus, even with a very low percentage of triazole-resistant cells mixed with triazole-susceptible cells","volume":"57","author":"Wang","year":"2019","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib678","doi-asserted-by":"crossref","first-page":"4225","DOI":"10.1128\/AAC.00316-10","article-title":"Expression, purification, and characterization of Aspergillus fumigatus sterol 14-alpha demethylase (CYP51) isoenzymes A and B","volume":"54","author":"Warrilow","year":"2010","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib679","doi-asserted-by":"crossref","first-page":"4101","DOI":"10.1128\/JCM.41.9.4101-4106.2003","article-title":"Molecular epidemiology of Aspergillus fumigatus isolates recovered from water, air, and patients shows two clusters of genetically distinct strains","volume":"41","author":"Warris","year":"2003","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib680","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1021\/acssynbio.6b00203","article-title":"Functional reconstitution of a fungal natural product gene cluster by advanced genome editing","volume":"6","author":"Weber","year":"2017","journal-title":"ACS Synthetic Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib681","doi-asserted-by":"crossref","first-page":"e02101","DOI":"10.1128\/AAC.02101-16","article-title":"Screening and characterization of a non-cyp51A mutation in an Aspergillus fumigatus cox10 strain conferring azole resistance","volume":"61","author":"Wei","year":"2017","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib682","doi-asserted-by":"crossref","first-page":"378","DOI":"10.1007\/s002940050350","article-title":"Development of a homologous transformation system for the human pathogenic fungus Aspergillus fumigatus based on the pyrG gene encoding orotidine 5'-monophosphate decarboxylase","volume":"33","author":"Weidner","year":"1998","journal-title":"Current Genetics"},{"key":"10.1016\/j.simyco.2021.100115_bib683","doi-asserted-by":"crossref","first-page":"638","DOI":"10.1128\/CVI.00479-06","article-title":"Histoplasmosis-associated cross-reactivity in the BioRad Platelia Aspergillus enzyme immunoassay","volume":"14","author":"Wheat","year":"2007","journal-title":"Clinical and Vaccine Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib684","doi-asserted-by":"crossref","first-page":"1231","DOI":"10.1128\/JCM.01767-09","article-title":"Aspergillus PCR: one step closer to standardization","volume":"48","author":"White","year":"2010","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib685","article-title":"A\u00a0national strategy to diagnose COVID-19 associated invasive fungal disease in the ICU","author":"White","year":"2021","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib686","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.01122-17","article-title":"Predicting invasive aspergillosis in hematology patients by combining clinical and genetic risk factors with early diagnostic biomarkers","volume":"56","author":"White","year":"2018","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib687","doi-asserted-by":"crossref","first-page":"2115","DOI":"10.1128\/JCM.00667-15","article-title":"Analytical and clinical evaluation of the PathoNostics AsperGenius Assay for detection of invasive aspergillosis and resistance to azole antifungal drugs during testing of serum samples","volume":"53","author":"White","year":"2015","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib688","doi-asserted-by":"crossref","first-page":"2356","DOI":"10.1128\/JCM.00411-17","article-title":"Analytical and clinical evaluation of the PathoNostics AsperGenius Assay for detection of invasive aspergillosis and resistance to azole antifungal drugs directly from plasma samples","volume":"55","author":"White","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib689","doi-asserted-by":"crossref","first-page":"1293","DOI":"10.1093\/cid\/civ507","article-title":"Aspergillus polymerase chain reaction: Systematic review of evidence for clinical use in comparison with antigen testing","volume":"61","author":"White","year":"2015","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib690","series-title":"Coronavirus disease (COVID-19) outbreak","author":"WHO","year":"2020"},{"issue":"suppl. 4","key":"10.1016\/j.simyco.2021.100115_bib691","first-page":"55","article-title":"Evaluation of Cyp51A mechanisms of azole resistance in Aspergillus fumigatus isolates from the United States. In 7th Trends in Medical Mycology, 9\u201312 October 2015, Lisbon, Portugal (poster no. P009)","volume":"58","author":"Wiederhold","year":"2015","journal-title":"Mycoses"},{"issue":"suppl. 1","key":"10.1016\/j.simyco.2021.100115_bib692","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1128\/JCM.02478-15","article-title":"First detection of TR34L98H and TR46Y121FT289A Cyp51 mutations in Aspergillus fumigatus isolates in the United States","volume":"54","author":"Wiederhold","year":"2016","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib693","doi-asserted-by":"crossref","first-page":"3063","DOI":"10.1093\/jac\/dky280","article-title":"Rezafungin (CD101) demonstrates potent in\u00a0vitro activity against Aspergillus, including azole-resistant Aspergillus fumigatus isolates and cryptic species","volume":"73","author":"Wiederhold","year":"2018","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib694","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00274-17","article-title":"An aptamer-based biosensor for the azole class of antifungal drugs","volume":"2","author":"Wiedman","year":"2017","journal-title":"mSphere"},{"key":"10.1016\/j.simyco.2021.100115_bib695","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1000200","article-title":"A\u00a0sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus","volume":"4","author":"Willger","year":"2008","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.simyco.2021.100115_bib696","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1086\/377099","article-title":"Selective effects of interleukin (IL)-15 on antifungal activity and IL-8 release by polymorphonuclear leukocytes in response to hyphae of Aspergillus species","volume":"188","author":"Winn","year":"2003","journal-title":"Journal of Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib697","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1093\/cid\/civ386","article-title":"PTX3 polymorphisms and invasive mold infections after solid organ transplant","volume":"61","author":"Wojtowicz","year":"2015","journal-title":"Clinical Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib698","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1080\/12298093.2020.1744955","article-title":"Antifungal susceptibility tests and the cyp51 mutant strains among clinical Aspergillus fumigatus isolates from Korean multicenters","volume":"48","author":"Won","year":"2020","journal-title":"Mycobiology"},{"key":"10.1016\/j.simyco.2021.100115_bib699","doi-asserted-by":"crossref","first-page":"1744","DOI":"10.1080\/21505594.2017.1339007","article-title":"Treatment of cyclosporin A retains host defense against invasive pulmonary aspergillosis in a non-immunosuppressive murine model by preserving the myeloid cell population","volume":"8","author":"Wong","year":"2017","journal-title":"Virulence"},{"key":"10.1016\/j.simyco.2021.100115_bib700","doi-asserted-by":"crossref","first-page":"804","DOI":"10.3201\/eid2604.190840","article-title":"Multicenter study of azole-resistant Aspergillus fumigatus clinical isolates, Taiwan","volume":"26","author":"Wu","year":"2020","journal-title":"Emerging Infectious Diseases"},{"key":"10.1016\/j.simyco.2021.100115_bib701","doi-asserted-by":"crossref","first-page":"544","DOI":"10.1111\/myc.12354","article-title":"Azole-resistant Aspergillus fumigatus isolates carrying TR34\/L98H mutations in Taiwan","volume":"58","author":"Wu","year":"2015","journal-title":"Mycoses"},{"key":"10.1016\/j.simyco.2021.100115_bib702","doi-asserted-by":"crossref","first-page":"1239","DOI":"10.1001\/jama.2020.2648","article-title":"Characteristics of and important lessons from the Coronavirus Disease 2019 (COVID-19) outbreak in China: Summary of a report of 72314 cases from the Chinese Center for Disease Control and Prevention","volume":"323","author":"Wu","year":"2020","journal-title":"JAMA"},{"key":"10.1016\/j.simyco.2021.100115_bib703","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1016\/S0140-6736(20)30308-1","article-title":"Full spectrum of COVID-19 severity still being depicted","volume":"395","author":"Xu","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.simyco.2021.100115_bib704","doi-asserted-by":"crossref","first-page":"346","DOI":"10.1007\/s00203-004-0707-z","article-title":"Isogenic auxotrophic mutant strains in the Aspergillus fumigatus genome reference strain AF293","volume":"182","author":"Xue","year":"2004","journal-title":"Archives of Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib705","doi-asserted-by":"crossref","first-page":"547","DOI":"10.1016\/j.jiac.2019.02.003","article-title":"Invasive pulmonary aspergillosis due to Aspergillus lentulus in an adult patient: A case report and literature review","volume":"25","author":"Yagi","year":"2019","journal-title":"Journal of Infection and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib706","doi-asserted-by":"crossref","first-page":"5018","DOI":"10.1002\/cncr.24559","article-title":"Clinical characteristics of 45 patients with invasive pulmonary aspergillosis: retrospective analysis of 1711 lung cancer cases","volume":"115","author":"Yan","year":"2009","journal-title":"Cancer"},{"key":"10.1016\/j.simyco.2021.100115_bib707","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1016\/S2213-2600(20)30079-5","article-title":"Clinical course and outcomes of critically ill patients with SARS-CoV-2 pneumonia in Wuhan, China: a single-centered, retrospective, observational study","volume":"8","author":"Yang","year":"2020","journal-title":"Lancet Respiratory Medicine"},{"key":"10.1016\/j.simyco.2021.100115_bib708","doi-asserted-by":"crossref","first-page":"E497","DOI":"10.1073\/pnas.1106399108","article-title":"Mevalonate governs interdependency of ergosterol and siderophore biosyntheses in the fungal pathogen Aspergillus fumigatus","volume":"109","author":"Yasmin","year":"2012","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"10.1016\/j.simyco.2021.100115_bib709","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1186\/s12941-017-0235-8","article-title":"Voriconazole and posaconazole therapeutic drug monitoring: a retrospective study","volume":"16","author":"Yi","year":"2017","journal-title":"Annals of Clinical Microbiology and Antimicrobials"},{"key":"10.1016\/j.simyco.2021.100115_bib710","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1016\/j.jmoldx.2018.10.004","article-title":"Rapid and sensitive detection of azole-resistant Aspergillus fumigatus by tandem repeat loop-mediated isothermal amplification","volume":"21","author":"Yu","year":"2019","journal-title":"Journal of Molecular Diagnostics"},{"key":"10.1016\/j.simyco.2021.100115_bib711","doi-asserted-by":"crossref","DOI":"10.1111\/cmi.13092","article-title":"A\u00a0sphingolipid synthesis-related protein OrmA in Aspergillus fumigatus is responsible for azole susceptibility and virulence","volume":"21","author":"Zhai","year":"2019","journal-title":"Cellular Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib712","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1016\/j.fgb.2015.12.007","article-title":"Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus","volume":"86","author":"Zhang","year":"2016","journal-title":"Fungal Genetics and Biology"},{"key":"10.1016\/j.simyco.2021.100115_bib713","doi-asserted-by":"crossref","first-page":"104364","DOI":"10.1016\/j.jcv.2020.104364","article-title":"Clinical features and short-term outcomes of 221 patients with COVID-19 in Wuhan, China","volume":"127","author":"Zhang","year":"2020","journal-title":"Journal of Clinical Virology"},{"key":"10.1016\/j.simyco.2021.100115_bib714","first-page":"20170635","article-title":"Evolution of cross-resistance to medical triazoles in Aspergillus fumigatus through selection pressure of environmental fungicides","volume":"284","author":"Zhang","year":"2017","journal-title":"Proceedings Biological Sciences"},{"key":"10.1016\/j.simyco.2021.100115_bib715","doi-asserted-by":"crossref","first-page":"e02372","DOI":"10.1128\/AAC.02372-18","article-title":"APX001 pharmacokinetic\/pharmacodynamic target determination against Aspergillus fumigatus in an in\u00a0vivo model of invasive pulmonary aspergillosis","volume":"63","author":"Zhao","year":"2019","journal-title":"Antimicrobial Agents and Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib716","doi-asserted-by":"crossref","first-page":"1164","DOI":"10.3389\/fmicb.2016.01164","article-title":"Direct molecular diagnosis of aspergillosis and CYP51A profiling from respiratory samples of French patients","volume":"7","author":"Zhao","year":"2016","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib717","doi-asserted-by":"crossref","first-page":"1497","DOI":"10.1093\/jac\/dkt071","article-title":"Azole resistance in Aspergillus fumigatus from bronchoalveolar lavage fluid samples of patients with chronic diseases","volume":"68","author":"Zhao","year":"2013","journal-title":"Journal of Antimicrobial Chemotherapy"},{"key":"10.1016\/j.simyco.2021.100115_bib718","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/s41423-020-0401-3","article-title":"Elevated exhaustion levels and reduced functional diversity of T cells in peripheral blood may predict severe progression in COVID-19 patients","volume":"17","author":"Zheng","year":"2020","journal-title":"Cellular & Molecular Immunology"},{"key":"10.1016\/j.simyco.2021.100115_bib719","doi-asserted-by":"crossref","first-page":"2153","DOI":"10.1128\/JCM.00345-17","article-title":"Diagnostic value of galactomannan antigen test in serum and bronchoalveolar lavage fluid samples from patients with nonneutropenic invasive pulmonary aspergillosis","volume":"55","author":"Zhou","year":"2017","journal-title":"Journal of Clinical Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib720","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/j.clinthera.2013.11.010","article-title":"Systemic antifungal prophylaxis after hematopoietic stem cell transplantation: a meta-analysis","volume":"36","author":"Ziakas","year":"2014","journal-title":"Clinical Therapeutics"},{"key":"10.1016\/j.simyco.2021.100115_bib721","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1007\/s00401-007-0255-0","article-title":"A\u00a0model of cerebral aspergillosis in non-immunosuppressed nursing rats","volume":"114","author":"Zimmerli","year":"2007","journal-title":"Acta Neuropathologica"},{"key":"10.1016\/j.simyco.2021.100115_bib722","doi-asserted-by":"crossref","first-page":"516","DOI":"10.3389\/fmicb.2018.00516","article-title":"Azole-resistance in Aspergillus terreus and related species: An emerging problem or a rare phenomenon?","volume":"9","author":"Zoran","year":"2018","journal-title":"Frontiers in Microbiology"},{"key":"10.1016\/j.simyco.2021.100115_bib723","doi-asserted-by":"crossref","first-page":"966","DOI":"10.1111\/exd.12807","article-title":"Onychomycosis from Aspergillus melleus, a novel pathogen for humans. Fungal identification and in\u00a0vitro drug susceptibility","volume":"24","author":"Zotti","year":"2015","journal-title":"Experimental Dermatology"},{"key":"10.1016\/j.simyco.2021.100115_bib724","doi-asserted-by":"crossref","first-page":"656","DOI":"10.3109\/13693780903420641","article-title":"A\u00a0new species, Aspergillus persii, as an agent of onychomycosis","volume":"48","author":"Zotti","year":"2010","journal-title":"Medical Mycology"}],"container-title":["Studies in Mycology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0166061621000026?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0166061621000026?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.ingentaconnect.com\/content\/wfbi\/sim\/2021\/00000100\/00000001\/art00001","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T04:31:21Z","timestamp":1792557081000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.ingentaconnect.com\/content\/10.1016\/j.simyco.2021.100115"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,9,1]]},"references-count":725,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,9,1]]}},"alternative-id":["0166-0616(20210901)100:1L.100115;1-"],"URL":"https:\/\/doi.org\/10.1016\/j.simyco.2021.100115","relation":{},"ISSN":["0166-0616"],"issn-type":[{"value":"0166-0616","type":"print"}],"subject":[],"published":{"date-parts":[[2021,9,1]]}}}