{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,5]],"date-time":"2026-08-05T05:37:34Z","timestamp":1785908254883,"version":"3.56.0"},"reference-count":20,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,5,25]],"date-time":"2025-05-25T00:00:00Z","timestamp":1748131200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100007676","name":"Asahi Group Holdings","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007676","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["surgopensci.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Surgery Open Science"],"published-print":{"date-parts":[[2025,6]]},"DOI":"10.1016\/j.sopen.2025.05.006","type":"journal-article","created":{"date-parts":[[2025,5,26]],"date-time":"2025-05-26T12:17:41Z","timestamp":1748261861000},"page":"113-118","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Searching for bacteria within acute cholecystitis using next-generation sequencers"],"prefix":"10.1016","volume":"26","author":[{"given":"Tomohiro","family":"Otsuka","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yoichi","family":"Ishizaki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiro","family":"Yoshimoto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kenji","family":"Takamori","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shin","family":"Watanabe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.sopen.2025.05.006_bb0005","article-title":"Bile collected from the normal gall bladder of patients during surgery has simple bacteria flora","volume":"14","author":"Watanabe","year":"2022","journal-title":"Cureus"},{"key":"10.1016\/j.sopen.2025.05.006_bb0010","first-page":"16","article-title":"Bacteria and fungi in acute cholecystitis. A prospective study comparing next generation sequencing to culture","volume":"80","author":"Dyrhovden","year":"2020","journal-title":"J Inf Secur"},{"key":"10.1016\/j.sopen.2025.05.006_bb0015","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1002\/jhbp.515","article-title":"Tokyo Guidelines 2018: diagnostic criteria and severity grading of acute cholecystitis (with videos)","volume":"25","author":"Yokoe","year":"2018","journal-title":"J Hepatobiliary Pancreat Sci"},{"key":"10.1016\/j.sopen.2025.05.006_bb0020","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1093\/dnares\/dst006","article-title":"Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing","volume":"20","author":"Kim","year":"2013","journal-title":"DNA Res"},{"key":"10.1016\/j.sopen.2025.05.006_bb0025","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/s41587-019-0209-9","article-title":"Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2","volume":"37","author":"Bolyen","year":"2019","journal-title":"Nat Biotechnol"},{"key":"10.1016\/j.sopen.2025.05.006_bb0030","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1038\/nmeth.3869","article-title":"DADA2: high-resolution sample inference from Illumina amplicon data","volume":"13","author":"Callahan","year":"2016","journal-title":"Nat Methods"},{"key":"10.1016\/j.sopen.2025.05.006_bb0035","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1155\/1992\/46529","article-title":"Acute calculous cholecystitis. What is new in diagnosis and therapy?","volume":"6","author":"Gouma","year":"1992","journal-title":"HPB Surg"},{"key":"10.1016\/j.sopen.2025.05.006_bb0040","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/j.jviscsurg.2013.01.004","article-title":"Antibiotic therapy in acute calculous cholecystitis","volume":"150","author":"Fuks","year":"2013","journal-title":"J Visc Surg"},{"key":"10.1016\/j.sopen.2025.05.006_bb0045","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1001\/archsurg.1996.01430160047008","article-title":"Simultaneous bacteriologic assessment of bile from gallbladder and common bile duct in control subjects and patients with gallstones and common duct stones","volume":"131","author":"Csendes","year":"1996","journal-title":"Arch Surg"},{"key":"10.1016\/j.sopen.2025.05.006_bb0050","first-page":"363","article-title":"Bacteriological studies of bile from the gallbladder in patients with carcinoma of the gallbladder, cholelithiasis, common bile duct stones and no gallstones disease","volume":"160","author":"Csendes","year":"1994","journal-title":"Eur J Surg"},{"key":"10.1016\/j.sopen.2025.05.006_bb0055","first-page":"221","article-title":"Bacteriology and antimicrobial susceptibility in biliary tract disease: an audit of 10-year\u2019s experience","volume":"18","author":"Chang","year":"2002","journal-title":"Kaohsiung J Med Sci"},{"key":"10.1016\/j.sopen.2025.05.006_bb0060","first-page":"132","article-title":"Bacteriological study of choledochal bile in patients with common bile duct stones, with or without acute suppurative cholangitis","volume":"36","author":"Maluenda","year":"1989","journal-title":"Hepatogastroenterology"},{"key":"10.1016\/j.sopen.2025.05.006_bb0065","first-page":"128","article-title":"Antibiotic use in acute cholecystitis: practice patterns in the absence of evidence-based guidelines","volume":"51","author":"Kanafani","year":"2005","journal-title":"J Inf Secur"},{"key":"10.1016\/j.sopen.2025.05.006_bb0070","first-page":"427","article-title":"Biliary bacteremia at various stages of acute cholecystitis","volume":"146","author":"Jarvinen","year":"1980","journal-title":"Acta Chir Scand"},{"key":"10.1016\/j.sopen.2025.05.006_bb0075","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1001\/archsurg.1990.01410140139024","article-title":"Predictive factors for bactibilia in acute cholecystitis","volume":"125","author":"Thompson","year":"1990","journal-title":"Arch Surg"},{"issue":"1","key":"10.1016\/j.sopen.2025.05.006_bb0080","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1002\/jhbp.518","article-title":"Tokyo Guidelines 2018: antimicrobial therapy for acute cholangitis and cholecystitis","volume":"25","author":"Gomi","year":"2018","journal-title":"J Hepatobiliary Pancreat Sci"},{"key":"10.1016\/j.sopen.2025.05.006_bb0085","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1111\/imm.12760","article-title":"The immune response to Prevotella bacteria in chronic inflammatory disease","volume":"151","author":"Larsen","year":"2017","journal-title":"Immunology"},{"key":"10.1016\/j.sopen.2025.05.006_bb0090","doi-asserted-by":"crossref","DOI":"10.1155\/2013\/935289","article-title":"Etiologic aspect of sarcoidosis as an allergic endogenous infection caused by Propiobacterium acnes","volume":"2013","author":"Eishi","year":"2013","journal-title":"Biomed Res Int"},{"key":"10.1016\/j.sopen.2025.05.006_bb0095","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1186\/s12967-024-05316-2","article-title":"Fecal Coprococcus, hidden behind abdominal symptoms in patients with small intestinal bacterial overgrowth","volume":"22","author":"Guo","year":"2024","journal-title":"J Transl Med"},{"key":"10.1016\/j.sopen.2025.05.006_bb0100","doi-asserted-by":"crossref","DOI":"10.1016\/j.biopha.2022.113518","article-title":"Collinsella is associated with cumulative inflammatory burden in an established rheumatoid arthritis cohort","volume":"153","author":"Ruiz-Lim\u00f3n","year":"2022","journal-title":"Biomed Pharmacother"}],"container-title":["Surgery Open Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2589845025000442?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2589845025000442?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,7,15]],"date-time":"2025-07-15T13:25:19Z","timestamp":1752585919000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2589845025000442"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,6]]},"references-count":20,"alternative-id":["S2589845025000442"],"URL":"https:\/\/doi.org\/10.1016\/j.sopen.2025.05.006","relation":{},"ISSN":["2589-8450"],"issn-type":[{"value":"2589-8450","type":"print"}],"subject":[],"published":{"date-parts":[[2025,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Searching for bacteria within acute cholecystitis using next-generation sequencers","name":"articletitle","label":"Article Title"},{"value":"Surgery Open Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.sopen.2025.05.006","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}