{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T18:37:04Z","timestamp":1761763024748},"reference-count":33,"publisher":"Elsevier BV","issue":"2","license":[{"start":{"date-parts":[[2016,8,1]],"date-time":"2016-08-01T00:00:00Z","timestamp":1470009600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":["surgjournal.com","clinicalkey.jp","clinicalkey.com","clinicalkey.es","clinicalkey.com.au","clinicalkey.fr","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Surgery"],"published-print":{"date-parts":[[2016,8]]},"DOI":"10.1016\/j.surg.2016.05.005","type":"journal-article","created":{"date-parts":[[2016,6,16]],"date-time":"2016-06-16T22:18:54Z","timestamp":1466115534000},"page":"350-358","update-policy":"http:\/\/dx.doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":7,"title":["The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease"],"prefix":"10.1016","volume":"160","author":[{"given":"Minna M.","family":"Wieck","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Justine W.","family":"Debelius","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ryan G.","family":"Spurrier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew","family":"Trecartin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rob","family":"Knight","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tracy C.","family":"Grikscheit","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.surg.2016.05.005_bib1","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1038\/ni0111-5","article-title":"Diet, gut microbiota and immune responses","volume":"12","author":"Maslowski","year":"2011","journal-title":"Nat Immunol"},{"key":"10.1016\/j.surg.2016.05.005_bib2","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1038\/nature07008","article-title":"A\u00a0microbial symbiosis factor prevents intestinal inflammatory disease","volume":"453","author":"Mazmanian","year":"2008","journal-title":"Nature"},{"key":"10.1016\/j.surg.2016.05.005_bib3","doi-asserted-by":"crossref","first-page":"1154","DOI":"10.3389\/fmicb.2015.01154","article-title":"Disruptions of the intestinal microbiome in necrotizing enterocolitis, short bowel syndrome, and Hirschsprung's associated enterocolitis","volume":"6","author":"Till","year":"2015","journal-title":"Front Microbiol"},{"key":"10.1016\/j.surg.2016.05.005_bib4","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1016\/j.bbrc.2014.01.104","article-title":"Characterization of the intestinal microbiome of Hirschsprung's disease with and without enterocolitis","volume":"445","author":"Yan","year":"2014","journal-title":"Biochem Biophys Res Commun"},{"key":"10.1016\/j.surg.2016.05.005_bib5","doi-asserted-by":"crossref","first-page":"e0124172","DOI":"10.1371\/journal.pone.0124172","article-title":"Characterization of bacterial and fungal microbiome in children with Hirschsprung disease with and without a history of enterocolitis: A multicenter study","volume":"10","author":"Frykman","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.surg.2016.05.005_bib6","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1542\/peds.2011-2736","article-title":"The human microbiome and its potential importance to pediatrics","volume":"129","author":"Johnson","year":"2012","journal-title":"Pediatrics"},{"key":"10.1016\/j.surg.2016.05.005_bib7","doi-asserted-by":"crossref","first-page":"392","DOI":"10.1177\/0148607113486482","article-title":"Intestinal microbial diversity and perioperative complications","volume":"38","author":"Ralls","year":"2014","journal-title":"JPEN J Parenter Enteral Nutr"},{"key":"10.1016\/j.surg.2016.05.005_bib8","doi-asserted-by":"crossref","first-page":"753","DOI":"10.1097\/MOP.0b013e32835a1ac8","article-title":"Normal neonatal microbiome variation in relation to environmental factors, infection and allergy","volume":"24","author":"Madan","year":"2012","journal-title":"Curr Opin Pediatr"},{"key":"10.1016\/j.surg.2016.05.005_bib9","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1097\/MOP.0b013e328332351b","article-title":"The importance of the development of the intestinal microbiota in infancy","volume":"21","author":"Vael","year":"2009","journal-title":"Curr Opin Pediatr"},{"key":"10.1016\/j.surg.2016.05.005_bib10","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1542\/peds.2005-2824","article-title":"Factors influencing the composition of the intestinal microbiota in early infancy","volume":"118","author":"Penders","year":"2006","journal-title":"Pediatrics"},{"key":"10.1016\/j.surg.2016.05.005_bib11","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1016\/j.chom.2015.09.008","article-title":"Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn's disease","volume":"18","author":"Lewis","year":"2015","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.surg.2016.05.005_bib12","doi-asserted-by":"crossref","first-page":"e105046","DOI":"10.1371\/journal.pone.0105046","article-title":"Mucosa-associated bacterial diversity in necrotizing enterocolitis","volume":"9","author":"Brower-Sinning","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.surg.2016.05.005_bib13","doi-asserted-by":"crossref","first-page":"e20647","DOI":"10.1371\/journal.pone.0020647","article-title":"Fecal microbiota in premature infants prior to necrotizing enterocolitis","volume":"6","author":"Mai","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.surg.2016.05.005_bib14","doi-asserted-by":"crossref","first-page":"222","DOI":"10.1038\/nature11053","article-title":"Human gut microbiome viewed across age and geography","volume":"486","author":"Yatsunenko","year":"2012","journal-title":"Nature"},{"key":"10.1016\/j.surg.2016.05.005_bib15","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.1126\/science.1110591","article-title":"Diversity of the human intestinal microbial flora","volume":"308","author":"Eckburg","year":"2005","journal-title":"Science"},{"key":"10.1016\/j.surg.2016.05.005_bib16","doi-asserted-by":"crossref","first-page":"5406","DOI":"10.1021\/pr3006364","article-title":"Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities","volume":"11","author":"Haange","year":"2012","journal-title":"J\u00a0Proteome Res"},{"key":"10.1016\/j.surg.2016.05.005_bib17","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1111\/apa.12059","article-title":"Intestinal microbial profiles in extremely preterm infants with and without necrotizing enterocolitis","volume":"102","author":"Normann","year":"2013","journal-title":"Acta Paediatr"},{"key":"10.1016\/j.surg.2016.05.005_bib18","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/2049-2618-1-13","article-title":"Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants","volume":"1","author":"Morrow","year":"2013","journal-title":"Microbiome"},{"key":"10.1016\/j.surg.2016.05.005_bib19","doi-asserted-by":"crossref","first-page":"213","DOI":"10.2307\/1218190","article-title":"Evolution and measurement of species diversity","volume":"21","author":"Whittaker","year":"1972","journal-title":"Taxon"},{"key":"10.1016\/j.surg.2016.05.005_bib20","doi-asserted-by":"crossref","first-page":"1621","DOI":"10.1038\/ismej.2012.8","article-title":"Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms","volume":"6","author":"Caporaso","year":"2012","journal-title":"ISME J"},{"key":"10.1016\/j.surg.2016.05.005_bib21","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1038\/ismej.2011.139","article-title":"An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea","volume":"6","author":"McDonald","year":"2011","journal-title":"ISME J"},{"key":"10.1016\/j.surg.2016.05.005_bib22","doi-asserted-by":"crossref","first-page":"2460","DOI":"10.1093\/bioinformatics\/btq461","article-title":"Search and clustering orders of magnitude faster than BLAST","volume":"26","author":"Edgar","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.surg.2016.05.005_bib23","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/nmeth.f.303","article-title":"QIIME allows analysis of high-throughput community sequencing data","volume":"7","author":"Caporaso","year":"2010","journal-title":"Nat Methods"},{"key":"10.1016\/j.surg.2016.05.005_bib24","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0006-3207(92)91201-3","article-title":"Conservation evaluation and phylogenetic diversity","volume":"61","author":"Faith","year":"2015","journal-title":"Biol Conserv"},{"key":"10.1016\/j.surg.2016.05.005_bib25","doi-asserted-by":"crossref","first-page":"8228","DOI":"10.1128\/AEM.71.12.8228-8235.2005","article-title":"UniFrac: A new phylogenetic method for comparing microbial communities","volume":"71","author":"Lozupone","year":"2005","journal-title":"Appl Environ Microbiol"},{"key":"10.1016\/j.surg.2016.05.005_bib26","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1111\/j.1541-0420.2005.00440.x","article-title":"Distance-based tests for homogeneity of multivariate dispersions","volume":"62","author":"Anderson","year":"2015","journal-title":"Biometrics"},{"key":"10.1016\/j.surg.2016.05.005_bib27","series-title":"Improved methods for understanding the human gut microbiome","author":"Debelius","year":"2015"},{"key":"10.1016\/j.surg.2016.05.005_bib28","doi-asserted-by":"crossref","first-page":"4578","DOI":"10.1073\/pnas.1000081107","article-title":"Succession of microbial consortia in the developing infant gut microbiome","volume":"108","author":"Koenig","year":"2011","journal-title":"Proc Natl Acad Sci U S A"},{"key":"10.1016\/j.surg.2016.05.005_bib29","doi-asserted-by":"crossref","first-page":"1694","DOI":"10.1126\/science.1177486","article-title":"Bacterial community variation in human body habitats across space and time","volume":"326","author":"Costello","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.surg.2016.05.005_bib30","doi-asserted-by":"crossref","first-page":"e55817","DOI":"10.1371\/journal.pone.0055817","article-title":"Alterations in the colonic microbiota in response to osmotic diarrhea","volume":"8","author":"Gorkiewicz","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.surg.2016.05.005_bib31","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1016\/j.molmed.2014.11.001","article-title":"Pediatric small intestinal bacterial overgrowth in low-income countries","volume":"21","author":"Donowitz","year":"2015","journal-title":"Trends Mol Med"},{"key":"10.1016\/j.surg.2016.05.005_bib32","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1097\/MCG.0000000000000257","article-title":"Small intestinal transit time is delayed in small intestinal bacterial overgrowth","volume":"49","author":"Roland","year":"2015","journal-title":"J\u00a0Clin Gastroenterol"},{"key":"10.1016\/j.surg.2016.05.005_bib33","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/s40168-015-0084-7","article-title":"Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome","volume":"3","author":"Engstrand Lilja","year":"2015","journal-title":"Microbiome"}],"container-title":["Surgery"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0039606016301325?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0039606016301325?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,9,9]],"date-time":"2019-09-09T17:24:01Z","timestamp":1568049841000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0039606016301325"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,8]]},"references-count":33,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2016,8]]}},"alternative-id":["S0039606016301325"],"URL":"https:\/\/doi.org\/10.1016\/j.surg.2016.05.005","relation":{},"ISSN":["0039-6060"],"issn-type":[{"value":"0039-6060","type":"print"}],"subject":[],"published":{"date-parts":[[2016,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease","name":"articletitle","label":"Article Title"},{"value":"Surgery","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.surg.2016.05.005","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2016 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}