{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T23:04:35Z","timestamp":1793315075895,"version":"4.5.0"},"reference-count":88,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2022,7,1]],"date-time":"2022-07-01T00:00:00Z","timestamp":1656633600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,7,1]],"date-time":"2022-07-01T00:00:00Z","timestamp":1656633600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,6,2]],"date-time":"2022-06-02T00:00:00Z","timestamp":1654128000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Systematic and Applied Microbiology"],"published-print":{"date-parts":[[2022,7]]},"DOI":"10.1016\/j.syapm.2022.126339","type":"journal-article","created":{"date-parts":[[2022,6,6]],"date-time":"2022-06-06T11:33:38Z","timestamp":1654515218000},"page":"126339","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":31,"title":["Nocardioides carbamazepini sp. nov., an ibuprofen degrader isolated from a biofilm bacterial community enriched on carbamazepine"],"prefix":"10.1016","volume":"45","author":[{"given":"Tibor","family":"Benedek","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M\u00e1rton","family":"P\u00e1pai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kholood","family":"Gharieb","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anna","family":"Bedics","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andr\u00e1s","family":"T\u00e1ncsics","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erika","family":"T\u00f3th","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hussein","family":"Daood","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gergely","family":"Mar\u00f3ti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roland","family":"Wirth","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ofir","family":"Menashe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"K\u00e1roly","family":"B\u00f3ka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bal\u00e1zs","family":"Kriszt","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.syapm.2022.126339_b0005","doi-asserted-by":"crossref","first-page":"3510","DOI":"10.1021\/acs.chemrev.8b00299","article-title":"Pharmaceuticals of emerging concern in aquatic systems: chemistry, occurrence, effects, and removal methods","volume":"119","author":"Patel","year":"2019","journal-title":"Chem. Rev."},{"key":"10.1016\/j.syapm.2022.126339_b0010","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1016\/j.envpol.2011.12.034","article-title":"Emerging organic contaminants in groundwater: A review of sources, fate and occurrence","volume":"163","author":"Lapworth","year":"2012","journal-title":"Environ. Pollut."},{"key":"10.1016\/j.syapm.2022.126339_b0015","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1002\/etc.3339","article-title":"Pharmaceuticals in the environment - global occurrences and perspectives","volume":"35","author":"Der Beek","year":"2016","journal-title":"Environ. Toxicol. Chem."},{"key":"10.1016\/j.syapm.2022.126339_b0020","unstructured":"D. Eike, R. Marcus, J. Dirk. The database \u201cPharmaceuticals in the Environment\u201d - Update and new analysis. Final Report. On behalf of the German Environment Agency. Umweltbundesamt, W\u00f6rlitzer Platz 1."},{"key":"10.1016\/j.syapm.2022.126339_b0025","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/j.aquatox.2004.03.014","article-title":"Toxic effects of the non-steroidal anti-inflammatory drug diclofenac: Part I: histopathological alterations and bioaccumulation in rainbow trout","volume":"68","author":"Schwaiger","year":"2004","journal-title":"Aquat. Toxicol."},{"key":"10.1016\/j.syapm.2022.126339_b0030","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1016\/j.aquatox.2006.11.002","article-title":"Changes in the timing of reproduction following chronic exposure to ibuprofen in Japanese medaka, Oryzias latipes","volume":"81","author":"Flippin","year":"2007","journal-title":"Aquat. Toxicol."},{"key":"10.1016\/j.syapm.2022.126339_b0035","doi-asserted-by":"crossref","first-page":"1405","DOI":"10.1007\/s00216-006-1033-x","article-title":"Ultrastructural effects of pharmaceuticals (carbamazepine, clofibric acid, metoprolol, diclofenac) in rainbow trout (Oncorhynchus mykiss) and common carp (Cyprinus carpio)","volume":"387","author":"Triebskorn","year":"2007","journal-title":"Anal. Bioanal. Chem."},{"key":"10.1016\/j.syapm.2022.126339_b0040","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/j.aquatox.2014.01.011","article-title":"Effects of non-steroidal anti-inflammatory drug (NSAID) diclofenac exposure in mussel Mytilus galloprovincialis","volume":"148","author":"Gonzalez-Rey","year":"2014","journal-title":"Aquat. Toxicol."},{"key":"10.1016\/j.syapm.2022.126339_b0045","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1016\/j.chemosphere.2011.02.049","article-title":"Cytotoxicity assessment of four pharmaceutical compounds on the zebra mussel (Dreissena polymorpha) haemocytes, gill and digestive gland primary cell cultures","volume":"84","author":"Parolini","year":"2011","journal-title":"Chemosphere."},{"key":"10.1016\/j.syapm.2022.126339_b0050","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/j.marenvres.2016.03.005","article-title":"Ecotoxicological potential of non-steroidal anti-inflammatory drugs (NSAIDs) in marine organisms: Bioavailability, biomarkers and natural occurrence in Mytilus galloprovincialis","volume":"121","author":"Mezzelani","year":"2016","journal-title":"Mar. Environ. Res."},{"key":"10.1016\/j.syapm.2022.126339_b0055","doi-asserted-by":"crossref","first-page":"e04087","DOI":"10.1016\/j.heliyon.2020.e04087","article-title":"Ibuprofen as an emerging organic contaminant in environment, distribution and remediation","volume":"6","author":"Chopra","year":"2020","journal-title":"Heliyon"},{"key":"10.1016\/j.syapm.2022.126339_b0060","doi-asserted-by":"crossref","first-page":"5607","DOI":"10.1099\/ijsem.0.004332","article-title":"List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. International Journal of Systematic and Evolutionary Microbiology","volume":"11","author":"Parte","year":"2020","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.syapm.2022.126339_b0065","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1099\/00207713-26-1-58","article-title":"Nocardioides, a new genus of the order Actinomycetales","volume":"26","author":"Prauser","year":"1976","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.syapm.2022.126339_b0070","doi-asserted-by":"crossref","first-page":"2151","DOI":"10.1099\/ijs.0.63192-0","article-title":"Nocardioides aestuarii sp. nov., isolated from tidal flat sediment","volume":"54","author":"Yi","year":"2004","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0075","first-page":"1203","article-title":"Nocardioides tritolerans sp. nov., isolated from soil in Bigeum Island, Korea","volume":"18","author":"Dastager","year":"2008","journal-title":"J. Microbiol. Biotechnol."},{"key":"10.1016\/j.syapm.2022.126339_b0080","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1099\/ijsem.0.001676","article-title":"Nocardioides cavernae sp. nov., an actinobacterium isolated from a karst cave","volume":"67","author":"Han","year":"2017","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0085","doi-asserted-by":"crossref","first-page":"1864","DOI":"10.1099\/ijs.0.65810-0","article-title":"Nocardioides fonticola sp. nov., a novel actinomycete isolated from spring water","volume":"58","author":"Chou","year":"2008","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0090","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1099\/ijs.0.022939-0","article-title":"Nocardioides hungaricus sp. nov., isolated from a drinking water supply system","volume":"61","author":"T\u00f3th","year":"2011","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0095","doi-asserted-by":"crossref","first-page":"1501","DOI":"10.1099\/ijs.0.63500-0","article-title":"Nocardioides oleivorans sp. nov., a novel crude-oil-degrading bacterium","volume":"55","author":"Schippers","year":"2005","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0100","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1016\/j.syapm.2004.10.002","article-title":"Nocardioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments","volume":"282","author":"Kubota","year":"2005","journal-title":"Syst. Appl. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0105","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1099\/00207713-49-2-675","article-title":"Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium","volume":"49","author":"Yoon","year":"1999","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.syapm.2022.126339_b0110","doi-asserted-by":"crossref","first-page":"2047","DOI":"10.1099\/ijs.0.057935-0","article-title":"Nocardioides soli sp. nov, a carbendazim-degrading bacterium isolated from soil under the long-term application of carbendazim","volume":"64","author":"Sun","year":"2014","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0115","doi-asserted-by":"crossref","first-page":"1199","DOI":"10.1099\/ijs.0.033308-0","article-title":"Nocardioides daejeonensis sp. nov., a denitrifying bacterium isolated from sludge in a sewage-disposal plant","volume":"62","author":"Woo","year":"2012","journal-title":"Int. J. Cyst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0120","doi-asserted-by":"crossref","first-page":"2615","DOI":"10.1099\/ijs.0.000309","article-title":"Nocardioides antarcticus sp. nov., isolated from marine sediment","volume":"65","author":"Deng","year":"2015","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0125","doi-asserted-by":"crossref","first-page":"3727","DOI":"10.1099\/ijs.0.047043-0","article-title":"Nocardioides daeguensis sp. nov., a nitrate-reducing bacterium isolated from activated sludge of an industrial wastewater treatment plant","volume":"63","author":"Cui","year":"2013","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0130","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1099\/00207713-47-4-933","article-title":"Nocardioides pyridinolyticus sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column","volume":"47","author":"Yoon","year":"1997","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.syapm.2022.126339_b0135","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/S0378-1097(03)00168-X","article-title":"Isolation and characterisation of Nocardioides sp. SP12, an atrazine-deegrading bacterial strain possessing the gene trzN from bulk- and maize rhizosphere soil","volume":"221","author":"Piutti","year":"2003","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.syapm.2022.126339_b0140","first-page":"86","article-title":"Isolation and characterization of marine Nocardioides capable of growing and degrading phenanthrene at 42 \u2103","volume":"6","author":"Iwabuchi","year":"1998","journal-title":"J. Mar. Biotechnol."},{"issue":"5","key":"10.1016\/j.syapm.2022.126339_b0145","doi-asserted-by":"crossref","first-page":"1585","DOI":"10.1007\/s00253-010-2460-3","article-title":"Mineralization of s-triazine herbicides by a newly isolated Nocardioides species strain DN36","volume":"86","author":"Satsuma","year":"2010","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.syapm.2022.126339_b0150","doi-asserted-by":"crossref","first-page":"658421","DOI":"10.3389\/fmicb.2021.658421","article-title":"Biodegradation of deoxynivalenol by Nocardioides sp. ZHH-013: 3-keto-deoxynivalenol and 3-epi-deoxynivalenol as intermediate products","volume":"12","author":"Zhang","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0155","doi-asserted-by":"crossref","first-page":"7725","DOI":"10.1128\/AEM.02752-14","article-title":"Aerobic biodegradation of 2,4-dinitroanisole by Nocardioides sp. strain JS1661","volume":"80","author":"Fida","year":"2014","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0160","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1111\/j.1574-6941.2006.00162.x","article-title":"Heterogeneous aerobic benzene-degrading communities in oxygen-depleted groundwaters","volume":"58","author":"Fahy","year":"2006","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.syapm.2022.126339_b0165","doi-asserted-by":"crossref","first-page":"9019","DOI":"10.1007\/s11356-016-6128-0","article-title":"Polyphasic analysis of an Azoarcus Leptothrix-dominated bacterial biofilm developed on stainless steel surface in a gasoline-contaminated hypoxic groundwater","volume":"23","author":"Benedek","year":"2016","journal-title":"Environ. Sci. Poll. Res."},{"key":"10.1016\/j.syapm.2022.126339_b0170","doi-asserted-by":"crossref","first-page":"32178","DOI":"10.1007\/s11356-018-3096-6","article-title":"Aerobic and oxygen-limited enrichment of BTEX-degrading biofilm bacteria: dominance of Malikia versus Acidovorax species","volume":"25","author":"Benedek","year":"2018","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10.1016\/j.syapm.2022.126339_b0175","doi-asserted-by":"crossref","first-page":"6023","DOI":"10.1007\/s00253-020-10668-y","article-title":"Aerobic and oxygen-limited naphthalene-amended enrichments induced the dominance of Pseudomonas spp. from a groundwater bacterial biofilm","volume":"104","author":"Benedek","year":"2020","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.syapm.2022.126339_b0180","doi-asserted-by":"crossref","first-page":"1674","DOI":"10.1093\/bioinformatics\/btv033","article-title":"MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph","volume":"31","author":"Dinghua","year":"2015","journal-title":"Bioinformatics."},{"key":"10.1016\/j.syapm.2022.126339_b0185","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1101\/gr.5969107","article-title":"MEGAN analysis of metagenomic data","volume":"17","author":"Huson","year":"2007","journal-title":"Genome Res."},{"key":"10.1016\/j.syapm.2022.126339_b0190","doi-asserted-by":"crossref","unstructured":"B. Papudeshi, J.M. Haggerty, M. Doane, M.M. Morris, K. Walsh, D.T. Beattie, D. Pande, P. Zaeri, G.G.Z. Silva, F. Thompson, R.A. Edwards, E.A. Dinsdale. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes. BMC Genom., 18 (2017), 915.","DOI":"10.1186\/s12864-017-4294-1"},{"key":"10.1016\/j.syapm.2022.126339_b0195","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1093\/bioinformatics\/btv638","article-title":"MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets","volume":"32","author":"Wu","year":"2016","journal-title":"Bioinformatics"},{"key":"10.1016\/j.syapm.2022.126339_b0200","doi-asserted-by":"crossref","first-page":"1144","DOI":"10.1038\/nmeth.3103","article-title":"Binning metagenomic contigs by coverage and composition","volume":"11","author":"Alneberg","year":"2014","journal-title":"Nat. Methods"},{"key":"10.1016\/j.syapm.2022.126339_b0205","doi-asserted-by":"crossref","first-page":"ppt. 158","DOI":"10.1186\/s40168-018-0541-1","article-title":"MetaWRAP \u2013 a felxible pipeline for genome-resolved metagenomic data analysis","volume":"6","author":"Uritskiy","year":"2018","journal-title":"Microbiome"},{"key":"10.1016\/j.syapm.2022.126339_b0210","doi-asserted-by":"crossref","unstructured":"R.M. Bowers, N.C. Kyrpides, R. Stepanauskas, M. Harmon-Smith, D. Doud, T.B.K. Reddy, F. Schulz, J. Jarett, A.R. Rivers, E.A. Eloe-Fadrosh, S.G. Tringe, N.N. Ivanova, A. Copeland, A. Clum, E.D. Becraft, R.R. Malmstrom, B. Birren, M. Podar, P. Bork, G.M. Weinstock, G.M. Garrity, J.A. Dodsworth, S. Yooseph, G. Sutton, F.O. Gl\u00f6ckner, J.A. Gilbert, W.C. Nelson, S.J. Hallam, S.P. Jungbluth, T.J.G. Ettema, S. Tighe, K.T. Konstantinidis, W.T. Liu, B.J. Baker, T. Rattei, J.A. Eisen, B. Hedlund, K.D. McMahon, N. Fierer, R. Knight, R. Finn, G. Cochrane, I. Karsch-Mizrachi, G.W. Tyson, C. Rinke, Genome Standards Consortium, A. Lapidus, F. Meyer, P. Yilmaz, D.H. Parks, A.M. Eren, L. Schriml, J.F. Banfield, P. Hugenholtz, T. Woyke. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat. Biotechnol., 35 (2017), pp. 725\u2013731.","DOI":"10.1038\/nbt.3893"},{"key":"10.1016\/j.syapm.2022.126339_b0215","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1038\/nbt.4229","article-title":"A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life","volume":"36","author":"Parks","year":"2018","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.syapm.2022.126339_b0220","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: Molecular evolutionary genetics analysis across computing platforms","volume":"35","author":"Kumar","year":"2018","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.syapm.2022.126339_b0225","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.syapm.2022.126339_b0230","doi-asserted-by":"crossref","first-page":"716","DOI":"10.1099\/ijs.0.038075-0","article-title":"Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species","volume":"62","author":"Kim","year":"2012","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0235","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/BF01731581","article-title":"A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences","volume":"16","author":"Kimura","year":"1980","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.syapm.2022.126339_b0240","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou","year":"1987","journal-title":"Mol. Biol. Evol."},{"issue":"4","key":"10.1016\/j.syapm.2022.126339_b0245","doi-asserted-by":"crossref","first-page":"783","DOI":"10.1111\/j.1558-5646.1985.tb00420.x","article-title":"Confidence limits on phylogenies: an approach using the bootstrap","volume":"39","author":"Felsenstein","year":"1985","journal-title":"Evolution"},{"key":"10.1016\/j.syapm.2022.126339_b0250","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1007\/s12275-018-8014-6","article-title":"Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction","volume":"56","author":"Na","year":"2018","journal-title":"J. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0255","doi-asserted-by":"crossref","first-page":"1881","DOI":"10.12688\/f1000research.9157.1","article-title":"Metagenomic analysis of an ecological wastewater treatment plant\u2019s microbial communities and their potential to metabolize pharmaceuticals","volume":"5","author":"Balcom","year":"2016","journal-title":"F1000Res."},{"issue":"4","key":"10.1016\/j.syapm.2022.126339_b0260","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1007\/BF01198764","article-title":"A standardized Gram staining procedure","volume":"8","author":"Claus","year":"1992","journal-title":"World J. Microbiol. Biotechnol."},{"key":"10.1016\/j.syapm.2022.126339_b0265","doi-asserted-by":"crossref","first-page":"2748","DOI":"10.1099\/ijs.0.65847-0","article-title":"Chryseobacterium hungaricum sp. nov., isolated from hydrocarbon-contaminated soil","volume":"58","author":"Szoboszlay","year":"2008","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0270","doi-asserted-by":"crossref","first-page":"2807","DOI":"10.1099\/ijsem.0.002898","article-title":"Sphingobium aquiterrae sp. nov., a toluene, meta- and para-xylene-degrading bacterium isolated from petroleum hydrocarbon-contaminated groundwater","volume":"68","author":"R\u00e9v\u00e9sz","year":"2018","journal-title":"Int. J. Syst. Evol. Micobiol."},{"key":"10.1016\/j.syapm.2022.126339_b0275","series-title":"Cowan and Steel\u2019s Manual for the identification of the medical bacteria","author":"Barrow","year":"2003"},{"key":"10.1016\/j.syapm.2022.126339_b0280","doi-asserted-by":"crossref","first-page":"911","DOI":"10.1139\/y59-099","article-title":"A rapid method of total lipid extraction and purification","volume":"37","author":"Bligh","year":"1959","journal-title":"Can. J. Biochem. Physiol."},{"key":"10.1016\/j.syapm.2022.126339_b0285","first-page":"330","article-title":"Phenotypic characterization and the principles of comparative systematics","author":"Tindall","year":"2007","journal-title":"Methods Gen. Mol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0290","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/B978-0-12-387730-7.00005-X","article-title":"Peptidoglycan structure","volume":"38","author":"Schumann","year":"2011","journal-title":"Methods Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0295","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1128\/jcm.16.3.584-586.1982","article-title":"A single derivatization method for bacterial fatty acid methyl esters including hydroxy acids","volume":"16","author":"Miller","year":"1982","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0300","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1099\/00207713-38-4-358","article-title":"Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum","volume":"38","author":"Kuykendall","year":"1988","journal-title":"Int. J. Syst. Bacter."},{"key":"10.1016\/j.syapm.2022.126339_b0305","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1099\/ijsem.0.003128","article-title":"Anaerobacillus alkaliphilus sp. nov., a novel alkaliphilic and moderately halophilic bacterium","volume":"69","author":"Borsodi","year":"2019","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0310","doi-asserted-by":"crossref","first-page":"1281","DOI":"10.1007\/s10482-017-0844-4","article-title":"A large-scale evaluation of algorithms to calculate average nucleotide identity","volume":"110","author":"Yoon","year":"2017","journal-title":"Antonie van Leeuwenhoek"},{"key":"10.1016\/j.syapm.2022.126339_b0315","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1186\/1471-2105-14-60","article-title":"Genome sequence-based species delimitation with confidence intervals and improved distance functions","volume":"14","author":"Meier-Kolthoff","year":"2013","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.syapm.2022.126339_b0320","first-page":"579","article-title":"MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis","volume":"48","author":"Vallenet","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.syapm.2022.126339_b0325","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: a worldwide hub of protein knowledge","volume":"47","author":"The UniProt Consortium","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.syapm.2022.126339_b0330","first-page":"86","article-title":"Antimicrobial activity of the anti-inflammatory agent, diclofenac sodium","volume":"36","author":"Annaduri","year":"1998","journal-title":"Indian J. Exp. Biol."},{"key":"10.1016\/j.syapm.2022.126339_b0335","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1016\/S0924-8579(99)00159-4","article-title":"The antibacterial action of diclofenac shown by inhibition of DNA synthesis","volume":"14","author":"Dastidar","year":"2000","journal-title":"Int. J. Antimicrob. Agents."},{"key":"10.1016\/j.syapm.2022.126339_b0340","first-page":"613","article-title":"Diclofenac in the management of E. coli urinary tract infections","volume":"20","author":"Mazudmar","year":"2006","journal-title":"In Vivo"},{"key":"10.1016\/j.syapm.2022.126339_b0345","article-title":"Genome resolved metagenomics using environmental and clinical samples","volume":"22","author":"Rehman Kayani","year":"2021","journal-title":"Brief. Bioinf."},{"key":"10.1016\/j.syapm.2022.126339_b0350","unstructured":"J.H. Yoon, Y.H. Park. The genus Nocardioides. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.) The prokaryotes, Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes (2006), pp. 1099\u20131113."},{"key":"10.1016\/j.syapm.2022.126339_b0355","doi-asserted-by":"crossref","first-page":"346","DOI":"10.1099\/ijs.0.059774-0","article-title":"Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes","volume":"64","author":"Kim","year":"2014","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0360","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/j.syapm.2015.02.001","article-title":"Past and future species definitions for Bacteria and Archaea","volume":"38","author":"Rossell\u00f3-M\u00f3ra","year":"2015","journal-title":"Syst. Appl. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0365","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1101\/gr.186072.114","article-title":"CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes","volume":"25","author":"Parks","year":"2015","journal-title":"Genome Res."},{"issue":"6","key":"10.1016\/j.syapm.2022.126339_b0370","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1007\/s12551-021-00865-y","article-title":"Metagenome-assembled genomes: concepts, analogies, and challenges","volume":"13","author":"Setubal","year":"2021","journal-title":"Biophys. Rev."},{"key":"10.1016\/j.syapm.2022.126339_b0375","doi-asserted-by":"crossref","first-page":"2682","DOI":"10.1099\/ijsem.0.004095","article-title":"Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil","volume":"70","author":"Roh","year":"2021","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0380","doi-asserted-by":"crossref","first-page":"1783","DOI":"10.1099\/ijs.0.64120-0","article-title":"Nocardioides kongjuensis sp. nov., an N-acylhomoserine lactone-degrading bacterium","volume":"56","author":"Yoon","year":"2006","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0385","doi-asserted-by":"crossref","first-page":"739","DOI":"10.1016\/j.scitotenv.2019.06.461","article-title":"Carbamazepine is degraded by the bacterial strain Labrys portucalensis F11","volume":"690","author":"Bessa","year":"2019","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.syapm.2022.126339_b0390","doi-asserted-by":"crossref","first-page":"3082","DOI":"10.1080\/09593330.2014.931468","article-title":"Potential of newly isolated wild Streptomyces strains as agents for the biodegradation of a recalcitrant pharmaceutical, carbamazepine","volume":"35","author":"Popa","year":"2014","journal-title":"Environ. Technol."},{"key":"10.1016\/j.syapm.2022.126339_b0395","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/1462-2920.15309","article-title":"Isolation and genomic characterization of the ibuprofen-degrading bacterium Sphingomonas strain MPO218","volume":"23","author":"Aulestia","year":"2020","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.syapm.2022.126339_b0400","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1099\/mic.0.062273-0","article-title":"Genetic and chemical characterization of ibuprofen degradation by Sphingomonas Ibu-2","volume":"159","author":"Murdoch","year":"2013","journal-title":"Microbiology."},{"key":"10.1016\/j.syapm.2022.126339_b0405","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1080\/09593330.2018.1502362","article-title":"Metabolite identification of ibuprofen biodegradation by Patulibacter medicamentivorans under aerobic conditions","volume":"41","author":"Salgado","year":"2020","journal-title":"Environ. Technol."},{"key":"10.1016\/j.syapm.2022.126339_b0410","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1515\/aep-2017-0020","article-title":"Dynamics of ibuprofen biodegradation by Bacillus sp. B1(2015b)","volume":"43","author":"Marchlewicz","year":"2017","journal-title":"Arch. Environ. Prot."},{"key":"10.1016\/j.syapm.2022.126339_b0415","doi-asserted-by":"crossref","first-page":"765","DOI":"10.1016\/j.chemosphere.2008.10.040","article-title":"Ability of White-rot fungi to remove selected pharmaceuticals and identification of degradation products of ibuprofen by Trametes versicolor","volume":"74","author":"Marco-Urrea","year":"2009","journal-title":"Chemosphere"},{"key":"10.1016\/j.syapm.2022.126339_b0420","doi-asserted-by":"crossref","first-page":"6800","DOI":"10.1021\/es200298t","article-title":"Transformation of the recalcitrant pharmaceutical compound carbamazepine by Pleurotus ostreatus: role of cytochrome P450 Monooxygenase and manganese peroxidase","volume":"45","author":"Golan-Rozen","year":"2011","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.syapm.2022.126339_b0425","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1038\/s41586-019-0965-1","article-title":"A new genomic blueprint of the human gut microbiota","volume":"568","author":"Almeida","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.syapm.2022.126339_b0430","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1016\/j.cell.2019.01.001","article-title":"Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle","volume":"176","author":"Pasolli","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.syapm.2022.126339_b0435","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1038\/s41586-019-1058-x","article-title":"New insights from uncultivated genomes of the global human gut microbiome","volume":"568","author":"Nayfach","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.syapm.2022.126339_b0440","doi-asserted-by":"crossref","unstructured":"A. Lavrinienko, E. Tukalenko, T.A. Mousseau, L.R. Thompson, R. Knight, T. Mappes, P.C. Watts. Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota. Sci. Data, 7 (2020) 312.","DOI":"10.1038\/s41597-020-00656-2"}],"container-title":["Systematic and Applied Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0723202022000467?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0723202022000467?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,9]],"date-time":"2025-10-09T08:19:44Z","timestamp":1759997984000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0723202022000467"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7]]},"references-count":88,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2022,7]]}},"alternative-id":["S0723202022000467"],"URL":"https:\/\/doi.org\/10.1016\/j.syapm.2022.126339","relation":{},"ISSN":["0723-2020"],"issn-type":[{"value":"0723-2020","type":"print"}],"subject":[],"published":{"date-parts":[[2022,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Nocardioides carbamazepini sp. nov., an ibuprofen degrader isolated from a biofilm bacterial community enriched on carbamazepine","name":"articletitle","label":"Article Title"},{"value":"Systematic and Applied Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.syapm.2022.126339","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Author(s). Published by Elsevier GmbH.","name":"copyright","label":"Copyright"}],"article-number":"126339"}}