{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,10]],"date-time":"2026-09-10T21:08:50Z","timestamp":1789074530843,"version":"build-2803163510"},"reference-count":48,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,8,19]],"date-time":"2026-08-19T00:00:00Z","timestamp":1787097600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100014013","name":"UK Research and Innovation","doi-asserted-by":"publisher","award":["BB\/Z515620\/1"],"award-info":[{"award-number":["BB\/Z515620\/1"]}],"id":[{"id":"10.13039\/100014013","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Trends in Microbiology"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.tim.2026.08.012","type":"journal-article","created":{"date-parts":[[2026,9,8]],"date-time":"2026-09-08T03:30:27Z","timestamp":1788838227000},"update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Leveraging traveller genomics for LMIC diarrhoeal disease management"],"prefix":"10.1016","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5850-1949","authenticated-orcid":false,"given":"Kate S.","family":"Baker","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danielle J.","family":"Ingle","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Madhumathi","family":"Irulappan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lewis C.E.","family":"Mason","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Balaji","family":"Veeravagarahvan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claire","family":"Jenkins","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie","family":"Chattaway","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stephanie B.","family":"Johnson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.tim.2026.08.012_bb0005","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1016\/S1473-3099(24)00691-1","article-title":"Global, regional, and national age-sex-specific burden of diarrhoeal diseases, their risk factors, and aetiologies, 1990-2021, for 204 countries and territories: a systematic analysis for the Global Burden of Disease Study 2021","volume":"25","author":"Collaborators","year":"2025","journal-title":"Lancet Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0010","author":"National Center for Biotechnology Information"},{"key":"10.1016\/j.tim.2026.08.012_bb0015","author":"The World Bank"},{"key":"10.1016\/j.tim.2026.08.012_bb0020","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1016\/S1473-3099(25)00118-5","article-title":"The WHO Bacterial Priority Pathogens List 2024: a prioritisation study to guide research, development, and public health strategies against antimicrobial resistance","volume":"25","author":"Sati","year":"2025","journal-title":"Lancet Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0025","doi-asserted-by":"crossref","DOI":"10.1136\/bmjgh-2022-009548","article-title":"Aetiology and incidence of diarrhoea requiring hospitalisation in children under 5 years of age in 28 low-income and middle-income countries: findings from the Global Pediatric Diarrhea Surveillance network","volume":"7","author":"Cohen","year":"2022","journal-title":"BMJ Glob. Health"},{"key":"10.1016\/j.tim.2026.08.012_bb0030","doi-asserted-by":"crossref","first-page":"332","DOI":"10.1089\/fpd.2021.0110","article-title":"PulseNet international survey on the implementation of whole genome sequencing in low and middle-income countries for foodborne disease surveillance","volume":"19","author":"Davedow","year":"2022","journal-title":"Foodborne Pathog. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0035","doi-asserted-by":"crossref","first-page":"1391","DOI":"10.1016\/j.cmi.2021.05.037","article-title":"Surveillance strategies using routine microbiology for antimicrobial resistance in low- and middle-income countries","volume":"27","author":"Lim","year":"2021","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.tim.2026.08.012_bb0040","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1007\/978-1-4939-9000-9_17","article-title":"Utilizing the public GenomeTrakr Database for foodborne pathogen traceback","volume":"1918","author":"Timme","year":"2019","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.tim.2026.08.012_bb0045","article-title":"European Union reference laboratories support the national food, feed and veterinary reference laboratories with rolling out whole genome sequencing in Europe","volume":"9","author":"Michelacci","year":"2023","journal-title":"Microb. Genom."},{"key":"10.1016\/j.tim.2026.08.012_bb0050","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1038\/s41467-022-35713-4","article-title":"An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance","volume":"14","author":"Sherry","year":"2023","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tim.2026.08.012_bb0055","author":"United States Food and Drug Administration"},{"key":"10.1016\/j.tim.2026.08.012_bb0060","doi-asserted-by":"crossref","DOI":"10.1017\/S0950268821001400","article-title":"Development and evaluation of an outbreak surveillance system integrating whole genome sequencing data for non-typhoidal Salmonella in London and South East of England, 2016-17","volume":"149","author":"Paranthaman","year":"2021","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.tim.2026.08.012_bb0065","doi-asserted-by":"crossref","first-page":"1452","DOI":"10.1017\/S0950268818001589","article-title":"Operational burden of implementing Salmonella Enteritidis and Typhimurium cluster detection using whole genome sequencing surveillance data in England: a retrospective assessment","volume":"146","author":"Mook","year":"2018","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.tim.2026.08.012_bb0070","doi-asserted-by":"crossref","first-page":"1707","DOI":"10.1038\/s41467-023-37312-3","article-title":"The genomic epidemiology of Escherichia albertii infecting humans and birds in Great Britain","volume":"14","author":"Bengtsson","year":"2023","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tim.2026.08.012_bb0075","doi-asserted-by":"crossref","first-page":"846","DOI":"10.1093\/cid\/ciw359","article-title":"Sharing is caring: international sharing of data enhances genomic surveillance of Listeria monocytogenes","volume":"63","author":"Kwong","year":"2016","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0080","article-title":"Implementation of routine genomic surveillance provided insights into a locally acquired outbreak caused by a rare clade of Salmonella enterica serovar Enteritidis in Queensland, Australia","volume":"9","author":"Rathnayake","year":"2023","journal-title":"Microb. Genom."},{"key":"10.1016\/j.tim.2026.08.012_bb0085","doi-asserted-by":"crossref","first-page":"1686","DOI":"10.3201\/eid2310.161836","article-title":"Mild illness during outbreak of Shiga toxin-producing Escherichia coli O157 infections associated with agricultural show, Australia","volume":"23","author":"Vasant","year":"2017","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0090","doi-asserted-by":"crossref","DOI":"10.1017\/S0950268824000827","article-title":"International travel as a risk factor for gastrointestinal infections in residents of North East England","volume":"152","author":"Love","year":"2024","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.tim.2026.08.012_bb0095","doi-asserted-by":"crossref","DOI":"10.1016\/S1473-3099(26)00227-6","article-title":"The spread of sexually transmissible drug-resistant shigellosis","author":"Marshall","year":"2026","journal-title":"Lancet"},{"key":"10.1016\/j.tim.2026.08.012_bb0100","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.84167","article-title":"Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning","volume":"12","author":"Bayliss","year":"2023","journal-title":"Elife"},{"key":"10.1016\/j.tim.2026.08.012_bb0105","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0007620","article-title":"Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers","volume":"13","author":"Ingle","year":"2019","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0110","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01200-21","article-title":"Genomic epidemiology and antimicrobial resistance mechanisms of imported typhoid in Australia","volume":"65","author":"Ingle","year":"2021","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.tim.2026.08.012_bb0115","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.85867","article-title":"Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from a meta-analysis of 13,000 Salmonella Typhi genomes","volume":"12","author":"Carey","year":"2023","journal-title":"Elife"},{"key":"10.1016\/j.tim.2026.08.012_bb0120","doi-asserted-by":"crossref","first-page":"e540","DOI":"10.1093\/cid\/ciac461","article-title":"Early detection of severe acute respiratory syndrome coronavirus 2 variants using traveler-based genomic surveillance at 4 US airports, September 2021-January 2022","volume":"76","author":"Wegrzyn","year":"2023","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0125","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgph.0005578","article-title":"A rapid evaluation of the UK Health Security Agency\u2019s new variant assessment platform global genomic surveillance programme","volume":"5","author":"Sanderson","year":"2025","journal-title":"PLoS Glob. Public Health"},{"key":"10.1016\/j.tim.2026.08.012_bb0130","doi-asserted-by":"crossref","first-page":"7389","DOI":"10.1038\/s41598-018-25764-3","article-title":"Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance","volume":"8","author":"Baker","year":"2018","journal-title":"Sci. Rep."},{"key":"10.1016\/j.tim.2026.08.012_bb0135","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1186\/s13073-025-01470-4","article-title":"The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health","volume":"17","author":"Dyson","year":"2025","journal-title":"Genome Med."},{"key":"10.1016\/j.tim.2026.08.012_bb0140","doi-asserted-by":"crossref","DOI":"10.1016\/j.tmaid.2019.101547","article-title":"Prevalence and risk factors for carriage of ESBL-producing Enterobacteriaceae in a population of Dutch travellers: a cross-sectional study","volume":"33","author":"Arcilla","year":"2020","journal-title":"Travel Med. Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0145","article-title":"The highly diverse plasmid population found in Escherichia coli colonizing travellers to Laos and its role in antimicrobial resistance gene carriage","volume":"9","author":"Snaith","year":"2023","journal-title":"Microb. Genom."},{"key":"10.1016\/j.tim.2026.08.012_bb0150","doi-asserted-by":"crossref","first-page":"1983","DOI":"10.1038\/s41467-023-37672-w","article-title":"The evolution and international spread of extensively drug resistant Shigella sonnei","volume":"14","author":"Mason","year":"2023","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tim.2026.08.012_bb0155","article-title":"Genetic heterogeneity in the Salmonella Typhi Vi capsule locus: a population genomic study from Fiji","volume":"10","author":"Getahun Strobel","year":"2024","journal-title":"Microb. Genom."},{"key":"10.1016\/j.tim.2026.08.012_bb0160","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.01920-22","article-title":"Persistence of rare Salmonella Typhi genotypes susceptible to first-line antibiotics in the remote islands of Samoa","volume":"13","author":"Sikorski","year":"2022","journal-title":"mBio"},{"key":"10.1016\/j.tim.2026.08.012_bb0165","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0010306","article-title":"Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials","volume":"16","author":"Dyson","year":"2022","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0170","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.1038\/ng.2369","article-title":"Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe","volume":"44","author":"Holt","year":"2012","journal-title":"Nat. Genet."},{"key":"10.1016\/j.tim.2026.08.012_bb0175","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.102253","article-title":"Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin","volume":"13","author":"Sia","year":"2025","journal-title":"Elife"},{"key":"10.1016\/j.tim.2026.08.012_bb0180","doi-asserted-by":"crossref","DOI":"10.1016\/j.lanmic.2025.101150","article-title":"Global diversity and evolution of Salmonella enterica serovar Panama: a genomic epidemiology study","volume":"6","author":"Pulford","year":"2025","journal-title":"Lancet Microbe"},{"key":"10.1016\/j.tim.2026.08.012_bb0185","doi-asserted-by":"crossref","first-page":"4786","DOI":"10.1038\/s41467-021-25073-w","article-title":"Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia","volume":"12","author":"Ingle","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tim.2026.08.012_bb0190","article-title":"Phage-plasmid borne methionine tRNA ligase mediates epidemiologically relevant antimicrobial survival","author":"Tam","year":"2024","journal-title":"medRxiv"},{"key":"10.1016\/j.tim.2026.08.012_bb0195","doi-asserted-by":"crossref","DOI":"10.1017\/S0950268824001006","article-title":"Trends in shigellosis notifications in England, January 2016 to March 2023","volume":"152","author":"Charles","year":"2024","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.tim.2026.08.012_bb0200","series-title":"Epidemiological update: shigellosis and other gastrointestinal infections in travellers returning from Cabo Verde","author":"European Centre for Disease Prevention and Control (ECDC)","year":"2026"},{"key":"10.1016\/j.tim.2026.08.012_bb0205","doi-asserted-by":"crossref","first-page":"S267","DOI":"10.1093\/cid\/ciab785","article-title":"Overcoming data bottlenecks in genomic pathogen surveillance","volume":"73","author":"Afolayan","year":"2021","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.tim.2026.08.012_bb0210","doi-asserted-by":"crossref","first-page":"e749","DOI":"10.1016\/S2214-109X(25)00534-0","volume":"14","author":"Yousafzai","year":"2026","journal-title":"Lancet Glob. Health"},{"key":"10.1016\/j.tim.2026.08.012_bb0215","article-title":"PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training","volume":"10","author":"Griffiths","year":"2024","journal-title":"Microb. Genom."},{"key":"10.1016\/j.tim.2026.08.012_bb0220","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00483-19","article-title":"Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates","volume":"63","author":"Feldgarden","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.tim.2026.08.012_bb0225","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3000547","article-title":"Surveillance to maintain the sensitivity of genotype-based antibiotic resistance diagnostics","volume":"17","author":"Hicks","year":"2019","journal-title":"PLoS Biol."},{"key":"10.1016\/j.tim.2026.08.012_bb0230","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1007\/s11673-020-10008-9","article-title":"Advancing global health equity in the COVID-19 response: beyond solidarity","volume":"17","author":"Johnson","year":"2020","journal-title":"J. Bioeth. Inq."},{"key":"10.1016\/j.tim.2026.08.012_bb0235","series-title":"TDR research fairness initiative report","author":"The Council on Health Research for Development","year":"2018"},{"key":"10.1016\/j.tim.2026.08.012_bb0240","doi-asserted-by":"crossref","first-page":"706","DOI":"10.1016\/S1473-3099(22)00796-4","article-title":"Measuring the global response to antimicrobial resistance, 2020-21: a systematic governance analysis of 114 countries","volume":"23","author":"Patel","year":"2023","journal-title":"Lancet Infect. Dis."}],"container-title":["Trends in Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0966842X26002283?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0966842X26002283?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,9,10]],"date-time":"2026-09-10T20:28:34Z","timestamp":1789072114000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0966842X26002283"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":48,"alternative-id":["S0966842X26002283"],"URL":"https:\/\/doi.org\/10.1016\/j.tim.2026.08.012","relation":{},"ISSN":["0966-842X"],"issn-type":[{"value":"0966-842X","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Leveraging traveller genomics for LMIC diarrhoeal disease management","name":"articletitle","label":"Article Title"},{"value":"Trends in Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.tim.2026.08.012","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Author(s). Published by Elsevier Ltd.","name":"copyright","label":"Copyright"}]}}