{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,3]],"date-time":"2026-08-03T03:58:07Z","timestamp":1785729487083,"version":"3.56.0"},"reference-count":108,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001321","name":"National Research Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001321","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010730","name":"Temasek Life Sciences Laboratory","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010730","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001381","name":"National Research Foundation","doi-asserted-by":"publisher","award":["NRF-CRP22-2019-0001"],"award-info":[{"award-number":["NRF-CRP22-2019-0001"]}],"id":[{"id":"10.13039\/501100001381","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["bmn.com","cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Trends in Plant Science"],"published-print":{"date-parts":[[2025,6]]},"DOI":"10.1016\/j.tplants.2024.11.012","type":"journal-article","created":{"date-parts":[[2024,12,19]],"date-time":"2024-12-19T13:10:19Z","timestamp":1734613819000},"page":"629-641","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":16,"title":["Epitranscriptomic regulation through phase separation in plants"],"prefix":"10.1016","volume":"30","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1808-6370","authenticated-orcid":false,"given":"Lisha","family":"Shen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.tplants.2024.11.012_bb0005","doi-asserted-by":"crossref","first-page":"D231","DOI":"10.1093\/nar\/gkab1083","article-title":"MODOMICS: a database of RNA modification pathways. 2021 update","volume":"50","author":"Boccaletto","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0010","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1186\/s13059-023-02872-6","article-title":"Recent advances in the plant epitranscriptome","volume":"24","author":"Shen","year":"2023","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0015","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1146\/annurev-arplant-071122-085813","article-title":"The diversity and functions of plant RNA modifications: what we know and where we go from here","volume":"74","author":"Sharma","year":"2023","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0020","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1016\/j.tplants.2019.01.005","article-title":"Messenger RNA modifications in plants","volume":"24","author":"Shen","year":"2019","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.tplants.2024.11.012_bb0025","doi-asserted-by":"crossref","first-page":"640","DOI":"10.1016\/j.molcel.2019.04.025","article-title":"Where, when, and how: context-dependent functions of RNA methylation writers, readers, and erasers","volume":"74","author":"Shi","year":"2019","journal-title":"Mol. Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0030","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/j.ceb.2020.11.005","article-title":"Chromatin and transcriptional regulation by reversible RNA methylation","volume":"70","author":"Wei","year":"2021","journal-title":"Curr. Opin. Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0035","doi-asserted-by":"crossref","first-page":"2045","DOI":"10.1093\/plphys\/kiad010","article-title":"Shaping the landscape of N6-methyladenosine RNA methylation in Arabidopsis","volume":"191","author":"Wong","year":"2023","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0040","doi-asserted-by":"crossref","first-page":"1901","DOI":"10.1093\/plcell\/koad070","article-title":"Functional interdependence of N6-methyladenosine methyltransferase complex subunits in Arabidopsis","volume":"35","author":"Shen","year":"2023","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0045","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1038\/s41467-022-28753-3","article-title":"Two zinc finger proteins with functions in m6A writing interact with HAKAI","volume":"13","author":"Zhang","year":"2022","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2024.11.012_bb0050","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1111\/nph.14586","article-title":"Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI","volume":"215","author":"R\u016f\u017ei\u010dka","year":"2017","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0055","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.devcel.2016.06.008","article-title":"N6-methyladenosine RNA modification regulates shoot stem cell fate in Arabidopsis","volume":"38","author":"Shen","year":"2016","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0060","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1105\/tpc.108.058883","article-title":"MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor","volume":"20","author":"Zhong","year":"2008","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0065","article-title":"FIONA1-mediated m6A modification regulates the floral transition in Arabidopsis","volume":"9","author":"Xu","year":"2022","journal-title":"Adv. Sci."},{"key":"10.1016\/j.tplants.2024.11.012_bb0070","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/s13059-022-02612-2","article-title":"FIONA1 is an RNA N6-methyladenosine methyltransferase affecting Arabidopsis photomorphogenesis and flowering","volume":"23","author":"Wang","year":"2022","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0075","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1104\/pp.105.065649","article-title":"Novel CIPK1-associated proteins in Arabidopsis contain an evolutionarily conserved C-terminal region that mediates nuclear localization","volume":"139","author":"Ok","year":"2005","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0080","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1093\/plcell\/koad300","article-title":"The m6A reader ECT1 drives mRNA sequestration to dampen salicylic acid-dependent stress responses in Arabidopsis","volume":"36","author":"Lee","year":"2023","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0085","doi-asserted-by":"crossref","first-page":"688","DOI":"10.1016\/j.molp.2021.01.013","article-title":"CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis","volume":"14","author":"Hou","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0090","doi-asserted-by":"crossref","first-page":"968","DOI":"10.1105\/tpc.17.00934","article-title":"The m6A reader ECT2 controls trichome morphology by affecting mRNA stability in Arabidopsis","volume":"30","author":"Wei","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0095","doi-asserted-by":"crossref","first-page":"986","DOI":"10.1105\/tpc.17.00854","article-title":"The YTH domain protein ECT2 is an m6A reader required for normal trichome branching in Arabidopsis","volume":"30","author":"Scutenaire","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0100","doi-asserted-by":"crossref","first-page":"952","DOI":"10.1105\/tpc.17.00833","article-title":"An m6A-YTH module controls developmental timing and morphogenesis in Arabidopsis","volume":"30","author":"Arribas-Hernandez","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0105","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1038\/s41477-024-01638-7","article-title":"N6-methyladenosine-mediated feedback regulation of abscisic acid perception via phase-separated ECT8 condensates in Arabidopsis","volume":"10","author":"Wu","year":"2024","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2024.11.012_bb0110","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1016\/j.molp.2021.01.014","article-title":"Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signals to control polyadenylation site choice in liquid-like nuclear bodies","volume":"14","author":"Song","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0115","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.adf3292","article-title":"m6A RNA demethylase AtALKBH9B promotes mobilization of a heat-activated long terminal repeat retrotransposon in Arabidopsis","volume":"9","author":"Fan","year":"2023","journal-title":"Sci. Adv."},{"key":"10.1016\/j.tplants.2024.11.012_bb0120","doi-asserted-by":"crossref","first-page":"2361","DOI":"10.1111\/jipb.13394","article-title":"The RNA N6-methyladenosine demethylase ALKBH9B modulates ABA responses in Arabidopsis","volume":"64","author":"Tang","year":"2022","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0125","doi-asserted-by":"crossref","first-page":"3566","DOI":"10.1111\/pce.14447","article-title":"ALKBH9C, a potential RNA m6A demethylase, regulates the response of Arabidopsis to abiotic stresses and abscisic acid","volume":"45","author":"Amara","year":"2022","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.tplants.2024.11.012_bb0130","doi-asserted-by":"crossref","first-page":"2995","DOI":"10.1105\/tpc.16.00912","article-title":"ALKBH10B is an RNA N6-methyladenosine demethylase affecting Arabidopsis floral transition","volume":"29","author":"Duan","year":"2017","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0135","doi-asserted-by":"crossref","first-page":"2772","DOI":"10.1016\/j.devcel.2024.06.012","article-title":"Defining context-dependent m6A RNA methylomes in Arabidopsis","volume":"59","author":"Zhang","year":"2024","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0140","doi-asserted-by":"crossref","first-page":"531","DOI":"10.1016\/j.molp.2024.02.016","article-title":"Plant RNA-binding proteins: phase separation dynamics and functional mechanisms underlying plant development and stress responses","volume":"17","author":"Fan","year":"2024","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0145","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1038\/s41594-021-00601-w","article-title":"It\u2019s not just a phase: function and characteristics of RNA-binding proteins in phase separation","volume":"28","author":"Wiedner","year":"2021","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0150","doi-asserted-by":"crossref","DOI":"10.15252\/embr.202051656","article-title":"Get closer and make hotspots: liquid-liquid phase separation in plants","volume":"22","author":"Kim","year":"2021","journal-title":"EMBO Rep."},{"key":"10.1016\/j.tplants.2024.11.012_bb0155","doi-asserted-by":"crossref","first-page":"4666","DOI":"10.1016\/j.jmb.2018.08.003","article-title":"Who\u2019s in and who\u2019s out \u2013 compositional control of biomolecular condensates","volume":"430","author":"Ditlev","year":"2018","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0160","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1016\/j.tcb.2018.02.004","article-title":"Protein phase separation: a new phase in cell biology","volume":"28","author":"Boeynaems","year":"2018","journal-title":"Trends Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0165","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1038\/nrm.2017.7","article-title":"Biomolecular condensates: organizers of cellular biochemistry","volume":"18","author":"Banani","year":"2017","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0170","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2023.102387","article-title":"Emerging roles of phase separation in plant transcription and chromatin organization","volume":"75","author":"Wang","year":"2023","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0175","doi-asserted-by":"crossref","first-page":"872","DOI":"10.1016\/j.jgg.2021.07.012","article-title":"Phase separation in RNA biology","volume":"48","author":"Lin","year":"2021","journal-title":"J. Genet. Genomics"},{"key":"10.1016\/j.tplants.2024.11.012_bb0180","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1146\/annurev-biochem-072711-164947","article-title":"Intrinsically disordered proteins and intrinsically disordered protein regions","volume":"83","author":"Oldfield","year":"2014","journal-title":"Annu. Rev. Biochem."},{"key":"10.1016\/j.tplants.2024.11.012_bb0185","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1002\/bies.200800151","article-title":"Close encounters of the third kind: disordered domains and the interactions of proteins","volume":"31","author":"Tompa","year":"2009","journal-title":"Bioessays"},{"key":"10.1016\/j.tplants.2024.11.012_bb0190","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1016\/j.tcb.2018.02.002","article-title":"Translational control by prion-like proteins","volume":"28","author":"Li","year":"2018","journal-title":"Trends Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0195","doi-asserted-by":"crossref","first-page":"1067","DOI":"10.1016\/j.cell.2016.05.026","article-title":"Mechanisms and consequences of macromolecular phase separation","volume":"165","author":"Bergeron-Sandoval","year":"2016","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0200","doi-asserted-by":"crossref","first-page":"W297","DOI":"10.1093\/nar\/gkab408","article-title":"IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation","volume":"49","author":"Erdos","year":"2021","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0205","doi-asserted-by":"crossref","first-page":"W331","DOI":"10.1093\/nar\/gkv490","article-title":"PrionW: a server to identify proteins containing glutamine\/asparagine rich prion-like domains and their amyloid cores","volume":"43","author":"Zambrano","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0210","doi-asserted-by":"crossref","first-page":"2501","DOI":"10.1093\/bioinformatics\/btu310","article-title":"PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition","volume":"30","author":"Lancaster","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.tplants.2024.11.012_bb0215","doi-asserted-by":"crossref","first-page":"D508","DOI":"10.1093\/nar\/gks1226","article-title":"D2P2: database of disordered protein predictions","volume":"41","author":"Oates","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0220","doi-asserted-by":"crossref","first-page":"2235","DOI":"10.1083\/jcb.201706034","article-title":"RNA gets in phase","volume":"216","author":"Saha","year":"2017","journal-title":"J. Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0225","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1038\/nature22386","article-title":"RNA phase transitions in repeat expansion disorders","volume":"546","author":"Jain","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0230","doi-asserted-by":"crossref","first-page":"8678","DOI":"10.1093\/nar\/gku582","article-title":"Free mRNA in excess upon polysome dissociation is a scaffold for protein multimerization to form stress granules","volume":"42","author":"Bounedjah","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0235","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/j.semcdb.2022.11.008","article-title":"Composition and function of stress granules and P-bodies in plants","volume":"156","author":"Kearly","year":"2022","journal-title":"Semin. Cell Dev. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0240","doi-asserted-by":"crossref","DOI":"10.3389\/fcell.2021.621779","article-title":"The integral role of RNA in stress granule formation and function","volume":"9","author":"Campos-Melo","year":"2021","journal-title":"Front. Cell Dev. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0245","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1016\/j.tcb.2016.05.004","article-title":"Principles and properties of stress granules","volume":"26","author":"Protter","year":"2016","journal-title":"Trends Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0250","doi-asserted-by":"crossref","first-page":"2734","DOI":"10.1073\/pnas.1800038115","article-title":"RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome","volume":"115","author":"Van Treeck","year":"2018","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2024.11.012_bb0255","doi-asserted-by":"crossref","first-page":"7189","DOI":"10.1073\/pnas.1504822112","article-title":"The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics","volume":"112","author":"Elbaum-Garfinkle","year":"2015","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2024.11.012_bb0260","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1016\/j.molcel.2015.09.017","article-title":"RNA controls PolyQ protein phase transitions","volume":"60","author":"Zhang","year":"2015","journal-title":"Mol. Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0265","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1016\/j.devcel.2022.02.005","article-title":"Liquid-liquid phase separation of RBGD2\/4 is required for heat stress resistance in Arabidopsis","volume":"57","author":"Zhu","year":"2022","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0270","doi-asserted-by":"crossref","first-page":"7137","DOI":"10.1074\/jbc.TM118.001189","article-title":"Friend or foe: post-translational modifications as regulators of phase separation and RNP granule dynamics","volume":"294","author":"Hofweber","year":"2019","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.tplants.2024.11.012_bb0275","doi-asserted-by":"crossref","first-page":"6696","DOI":"10.1074\/jbc.R115.695056","article-title":"Modulation of intrinsically disordered protein function by post-translational modifications","volume":"291","author":"Bah","year":"2016","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.tplants.2024.11.012_bb0280","doi-asserted-by":"crossref","DOI":"10.1002\/bies.201800085","article-title":"RNAs, phase separation, and membrane-less organelles: are post-transcriptional modifications modulating organelle dynamics?","volume":"40","author":"Drino","year":"2018","journal-title":"Bioessays"},{"key":"10.1016\/j.tplants.2024.11.012_bb0285","doi-asserted-by":"crossref","first-page":"6051","DOI":"10.1093\/nar\/gkx141","article-title":"N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein","volume":"45","author":"Liu","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0290","doi-asserted-by":"crossref","first-page":"17249","DOI":"10.1021\/jacs.7b09213","article-title":"RNA chemical proteomics reveals the N6-methyladenosine m6A-regulated protein-RNA interactome","volume":"139","author":"Arguello","year":"2017","journal-title":"J. Am. Chem. Soc."},{"key":"10.1016\/j.tplants.2024.11.012_bb0295","doi-asserted-by":"crossref","DOI":"10.3389\/fcell.2021.786454","article-title":"Modulation of phase separation by RNA: a glimpse on N6-methyladenosine modification","volume":"9","author":"Su","year":"2021","journal-title":"Front. Cell Dev. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0300","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1007\/s13238-019-00660-2","article-title":"Binding to m6A RNA promotes YTHDF2-mediated phase separation","volume":"11","author":"Wang","year":"2020","journal-title":"Protein Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0305","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1038\/s41422-019-0210-3","article-title":"Multivalent m6A motifs promote phase separation of YTHDF proteins","volume":"29","author":"Gao","year":"2019","journal-title":"Cell Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0310","doi-asserted-by":"crossref","first-page":"424","DOI":"10.1038\/s41586-019-1374-1","article-title":"m6A enhances the phase separation potential of mRNA","volume":"571","author":"Ries","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0315","doi-asserted-by":"crossref","DOI":"10.1080\/15592324.2022.2079308","article-title":"N6-methyladenosine-modified RNA acts as a molecular glue that drives liquid-liquid phase separation in plants","volume":"17","author":"Lee","year":"2022","journal-title":"Plant Signal. Behav."},{"key":"10.1016\/j.tplants.2024.11.012_bb0320","doi-asserted-by":"crossref","first-page":"1790","DOI":"10.1038\/s41467-021-22083-6","article-title":"R-loop resolution promotes co-transcriptional chromatin silencing","volume":"12","author":"Xu","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2024.11.012_bb0325","article-title":"Interplay between m6A modification and overall transcripts quantity: impacts on mRNA composition in plant stress granules","author":"Kubiak","year":"2023","journal-title":"bioRxiv"},{"key":"10.1016\/j.tplants.2024.11.012_bb0330","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1038\/s41589-020-0524-y","article-title":"m6A-binding YTHDF proteins promote stress granule formation","volume":"16","author":"Fu","year":"2020","journal-title":"Nat. Chem. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0335","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3001535","article-title":"Dynamic assembly of the mRNA m6A methyltransferase complex is regulated by METTL3 phase separation","volume":"20","author":"Han","year":"2022","journal-title":"PLoS Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0340","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1038\/s41586-019-1165-8","article-title":"Arabidopsis FLL2 promotes liquid-liquid phase separation of polyadenylation complexes","volume":"569","author":"Fang","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0345","doi-asserted-by":"crossref","first-page":"1397","DOI":"10.1038\/s41477-021-01002-z","article-title":"A photoregulatory mechanism of the circadian clock in Arabidopsis","volume":"7","author":"Wang","year":"2021","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2024.11.012_bb0350","doi-asserted-by":"crossref","first-page":"2042","DOI":"10.1038\/s41477-023-01580-0","article-title":"Light-induced LLPS of the CRY2\/SPA1\/FIO1 complex regulating mRNA methylation and chlorophyll homeostasis in Arabidopsis","volume":"9","author":"Jiang","year":"2023","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2024.11.012_bb0355","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0030588","article-title":"Novel AlkB dioxygenases \u2013 alternative models for in silico and in vivo studies","volume":"7","author":"Mielecki","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.tplants.2024.11.012_bb0360","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2405100121","article-title":"The m6A reader SlYTH2 negatively regulates tomato fruit aroma by impeding the translation process","volume":"121","author":"Bian","year":"2024","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.tplants.2024.11.012_bb0365","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1016\/j.molp.2024.05.002","article-title":"The RNA binding protein EHD6 recruits the m6A reader YTH07 and sequesters OsCOL4 mRNA into phase-separated ribonucleoprotein condensates to promote rice flowering","volume":"17","author":"Cui","year":"2024","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0370","doi-asserted-by":"crossref","first-page":"2908","DOI":"10.1093\/plcell\/koae149","article-title":"The m6A reader ECT8 is an abiotic stress sensor that accelerates mRNA decay in Arabidopsis","volume":"36","author":"Cai","year":"2024","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0375","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2021.722643","article-title":"Plant stress granules: trends and beyond","volume":"12","author":"Maruri-Lopez","year":"2021","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2024.11.012_bb0380","doi-asserted-by":"crossref","first-page":"2569","DOI":"10.1111\/jipb.13575","article-title":"The m6A reader SiYTH1 enhances drought tolerance by affecting the messenger RNA stability of genes related to stomatal closure and reactive oxygen species scavenging in Setaria italica","volume":"65","author":"Luo","year":"2023","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0385","doi-asserted-by":"crossref","DOI":"10.15252\/embr.202357741","article-title":"A YTHDF-PABP interaction is required for m6 A-mediated organogenesis in plants","volume":"24","author":"Due Tankmar","year":"2023","journal-title":"EMBO Rep."},{"key":"10.1016\/j.tplants.2024.11.012_bb0390","doi-asserted-by":"crossref","first-page":"958","DOI":"10.1016\/j.ccell.2021.04.017","article-title":"N6-methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation","volume":"39","author":"Cheng","year":"2021","journal-title":"Cancer Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0395","doi-asserted-by":"crossref","first-page":"2070","DOI":"10.1111\/jcmm.14847","article-title":"m6A facilitates YTHDF-independent phase separation","volume":"24","author":"Liu","year":"2020","journal-title":"J. Cell. Mol. Med."},{"key":"10.1016\/j.tplants.2024.11.012_bb0400","doi-asserted-by":"crossref","first-page":"486","DOI":"10.1038\/nature14263","article-title":"Structural imprints in vivo decode RNA regulatory mechanisms","volume":"519","author":"Spitale","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0405","doi-asserted-by":"crossref","first-page":"560","DOI":"10.1038\/nature14234","article-title":"N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions","volume":"518","author":"Liu","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0410","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1038\/s41580-020-0264-6","article-title":"RNA contributions to the form and function of biomolecular condensates","volume":"22","author":"Roden","year":"2021","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0415","doi-asserted-by":"crossref","first-page":"322","DOI":"10.1038\/s41594-019-0200-7","article-title":"RNA structure maps across mammalian cellular compartments","volume":"26","author":"Sun","year":"2019","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0420","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1038\/s41467-017-02770-z","article-title":"Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2\/B1","volume":"9","author":"Wu","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2024.11.012_bb0425","doi-asserted-by":"crossref","first-page":"822","DOI":"10.1016\/j.jmb.2015.08.021","article-title":"N6-methyladenosine modification in a long noncoding RNA hairpin predisposes its conformation to protein binding","volume":"428","author":"Zhou","year":"2016","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0430","doi-asserted-by":"crossref","first-page":"1867","DOI":"10.1111\/pbi.14307","article-title":"Programmable RNA N6-methyladenosine editing with CRISPR\/dCas13a in plants","volume":"22","author":"Shi","year":"2024","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2024.11.012_bb0435","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1186\/s13007-023-01053-7","article-title":"Targeted mRNA demethylation in Arabidopsis using plant m6A editor","volume":"19","author":"Fang","year":"2023","journal-title":"Plant Methods"},{"key":"10.1016\/j.tplants.2024.11.012_bb0440","doi-asserted-by":"crossref","first-page":"1418","DOI":"10.1016\/j.molp.2021.08.006","article-title":"Epitranscriptome engineering in crop improvement","volume":"14","author":"Shen","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0445","doi-asserted-by":"crossref","first-page":"1431","DOI":"10.1038\/s41587-020-0572-6","article-title":"Programmable m6A modification of cellular RNAs with a Cas13-directed methyltransferase","volume":"38","author":"Wilson","year":"2020","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0450","doi-asserted-by":"crossref","first-page":"5684","DOI":"10.1093\/nar\/gkaa269","article-title":"Targeted mRNA demethylation using an engineered dCas13b-ALKBH5 fusion protein","volume":"48","author":"Li","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0455","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1038\/s41477-018-0115-z","article-title":"Precision genome engineering through adenine and cytosine base editing","volume":"4","author":"Kim","year":"2018","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2024.11.012_bb0460","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1038\/s41477-018-0178-x","article-title":"Precision genome engineering through adenine base editing in plants","volume":"4","author":"Kang","year":"2018","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2024.11.012_bb0465","doi-asserted-by":"crossref","DOI":"10.1002\/advs.202401118","article-title":"CRISPR\/dCas13(Rx) derived RNA N6-methyladenosine (m6A) dynamic modification in plant","volume":"11","author":"Yu","year":"2024","journal-title":"Adv. Sci."},{"key":"10.1016\/j.tplants.2024.11.012_bb0470","doi-asserted-by":"crossref","first-page":"1387","DOI":"10.1016\/j.molp.2017.09.013","article-title":"5-Methylcytosine RNA methylation in Arabidopsis thaliana","volume":"10","author":"Cui","year":"2017","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2024.11.012_bb0475","doi-asserted-by":"crossref","first-page":"1710","DOI":"10.1104\/pp.20.00382","article-title":"The N1-methyladenosine methylome of petunia mRNA","volume":"183","author":"Yang","year":"2020","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0480","doi-asserted-by":"crossref","first-page":"3739","DOI":"10.1093\/plcell\/koad189","article-title":"N4-acetylation of cytidine in mRNA plays essential roles in plants","volume":"35","author":"Wang","year":"2023","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0485","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1105\/tpc.16.00751","article-title":"Transcriptome-wide mapping of RNA 5-methylcytosine in Arabidopsis mRNAs and noncoding RNAs","volume":"29","author":"David","year":"2017","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0490","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1016\/j.fmre.2021.10.008","article-title":"RNA 5-methylcytosine regulates YBX2-dependent liquid-liquid phase separation","volume":"2","author":"Wang","year":"2022","journal-title":"Fundam. Res."},{"key":"10.1016\/j.tplants.2024.11.012_bb0495","doi-asserted-by":"crossref","first-page":"580","DOI":"10.1038\/s41586-023-06701-5","article-title":"m1A in CAG repeat RNA binds to TDP-43 and induces neurodegeneration","volume":"623","author":"Sun","year":"2023","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0500","doi-asserted-by":"crossref","first-page":"3208","DOI":"10.1016\/j.cell.2023.05.047","article-title":"QKI shuttles internal m7G-modified transcripts into stress granules and modulates mRNA metabolism","volume":"186","author":"Zhao","year":"2023","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2024.11.012_bb0505","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1038\/nature24456","article-title":"The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution","volume":"551","author":"Safra","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2024.11.012_bb0510","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1016\/j.ymthe.2022.10.015","article-title":"N1-methyladenosine formation, gene regulation, biological functions, and clinical relevance","volume":"31","author":"Xiong","year":"2023","journal-title":"Mol. Ther."},{"key":"10.1016\/j.tplants.2024.11.012_bb0515","doi-asserted-by":"crossref","first-page":"3243","DOI":"10.1021\/acschembio.7b00906","article-title":"Existence of internal N7-methylguanosine modification in mRNA determined by differential enzyme treatment coupled with mass spectrometry analysis","volume":"13","author":"Chu","year":"2018","journal-title":"ACS Chem. Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0520","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fpls.2012.00048","article-title":"Adenosine methylation in Arabidopsis mRNA is associated with the 3\u2032 end and reduced levels cause developmental defects","volume":"3","author":"Bodi","year":"2012","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2024.11.012_bb0525","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.78808","article-title":"m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5\u2032 splice site","volume":"11","author":"Parker","year":"2022","journal-title":"Elife"},{"key":"10.1016\/j.tplants.2024.11.012_bb0530","doi-asserted-by":"crossref","first-page":"2410","DOI":"10.1111\/pbi.14354","article-title":"OsALKBH9-mediated m6A demethylation regulates tapetal PCD and pollen exine accumulation in rice","volume":"22","author":"Tang","year":"2024","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2024.11.012_bb0535","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1186\/s13059-019-1771-7","article-title":"RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening","volume":"20","author":"Zhou","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2024.11.012_bb0540","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2021.102047","article-title":"N6-methyladenosine modification underlies messenger RNA metabolism and plant development","volume":"63","author":"Shao","year":"2021","journal-title":"Curr. Opin. Plant Biol."}],"container-title":["Trends in Plant Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1360138524003133?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1360138524003133?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,6,5]],"date-time":"2025-06-05T22:10:54Z","timestamp":1749161454000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1360138524003133"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,6]]},"references-count":108,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2025,6]]}},"alternative-id":["S1360138524003133"],"URL":"https:\/\/doi.org\/10.1016\/j.tplants.2024.11.012","relation":{},"ISSN":["1360-1385"],"issn-type":[{"value":"1360-1385","type":"print"}],"subject":[],"published":{"date-parts":[[2025,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Epitranscriptomic regulation through phase separation in plants","name":"articletitle","label":"Article Title"},{"value":"Trends in Plant Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.tplants.2024.11.012","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}]}}