{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,8]],"date-time":"2026-04-08T02:57:42Z","timestamp":1775617062396,"version":"3.50.1"},"reference-count":125,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T00:00:00Z","timestamp":1775001600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["GNT1178460"],"award-info":[{"award-number":["GNT1178460"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001782","name":"University of Melbourne","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001782","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020017","name":"The University of Melbourne Botany Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100020017","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000923","name":"Australian Research Council","doi-asserted-by":"publisher","award":["DP220101544"],"award-info":[{"award-number":["DP220101544"]}],"id":[{"id":"10.13039\/501100000923","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Trends in Plant Science"],"published-print":{"date-parts":[[2026,4]]},"DOI":"10.1016\/j.tplants.2025.11.006","type":"journal-article","created":{"date-parts":[[2025,12,5]],"date-time":"2025-12-05T13:34:05Z","timestamp":1764941645000},"page":"469-483","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Molecular approaches to increasing plant root carbon"],"prefix":"10.1016","volume":"31","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5064-3931","authenticated-orcid":false,"given":"Declan","family":"Lafferty","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-8735-2470","authenticated-orcid":false,"given":"Jacob","family":"Calabria","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6637-7239","authenticated-orcid":false,"given":"Ryan","family":"Lister","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-1720-7370","authenticated-orcid":false,"given":"Jorge E.","family":"Mayer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7843-0957","authenticated-orcid":false,"given":"Michelle","family":"Watt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9478-5459","authenticated-orcid":false,"given":"John F.","family":"Golz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.tplants.2025.11.006_bb0005","series-title":"Climate Change 2023: Synthesis Report (Full Volume) Contribution of Working Groups I, II and III to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change","author":"M\u00e9ndez","year":"2023"},{"key":"10.1016\/j.tplants.2025.11.006_bb0010","series-title":"Negative Emissions Technologies and Reliable Sequestration: A Research Agenda","author":"National Academies of Sciences, Engineering, and Medicine","year":"2019"},{"key":"10.1016\/j.tplants.2025.11.006_bb0015","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1080\/713610854","article-title":"Global potential of soil carbon sequestration to mitigate the greenhouse effect","volume":"22","author":"Lal","year":"2003","journal-title":"Crit. Rev. Plant Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0020","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1038\/nature16069","article-title":"The contentious nature of soil organic matter","volume":"528","author":"Lehmann","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2025.11.006_bb0025","doi-asserted-by":"crossref","first-page":"9575","DOI":"10.1073\/pnas.1706103114","article-title":"Soil carbon debt of 12,000 years of human land use","volume":"114","author":"Sanderman","year":"2017","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2025.11.006_bb0030","doi-asserted-by":"crossref","first-page":"129","DOI":"10.2489\/jswc.68.5.129A","article-title":"Soil organic carbon: the value to soil properties","volume":"68","author":"Blanco-Canqui","year":"2013","journal-title":"J. Soil Water Conserv."},{"key":"10.1016\/j.tplants.2025.11.006_bb0035","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1093\/ajae\/aaz014","article-title":"Agricultural productivity and soil carbon dynamics: a bioeconomic model","volume":"101","author":"Berazneva","year":"2019","journal-title":"Am. J. Agric. Econ."},{"key":"10.1016\/j.tplants.2025.11.006_bb0040","doi-asserted-by":"crossref","DOI":"10.1088\/1748-9326\/adc31b","article-title":"Removing atmospheric CO2 through mass scaleup of crops with enhanced root systems","volume":"20","author":"Faggiani Dias","year":"2025","journal-title":"Environ. Res. Lett."},{"key":"10.1016\/j.tplants.2025.11.006_bb0045","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1016\/j.agee.2011.02.029","article-title":"Roots contribute more to refractory soil organic matter than above-ground crop residues, as revealed by a long-term field experiment","volume":"141","author":"K\u00e4tterer","year":"2011","journal-title":"Agric. Ecosyst. Environ."},{"key":"10.1016\/j.tplants.2025.11.006_bb0050","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1007\/s11104-004-0907-y","article-title":"Is soil carbon mostly root carbon? Mechanisms for a specific stabilisation","volume":"269","author":"Rasse","year":"2005","journal-title":"Plant Soil"},{"key":"10.1016\/j.tplants.2025.11.006_bb0055","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1007\/s00374-016-1168-7","article-title":"Fate of straw- and root-derived carbon in a Swedish agricultural soil","volume":"53","author":"Ghafoor","year":"2017","journal-title":"Biol. Fertil. Soils"},{"key":"10.1016\/j.tplants.2025.11.006_bb0060","doi-asserted-by":"crossref","first-page":"1589","DOI":"10.1098\/rstb.2011.0244","article-title":"Large-scale sequestration of atmospheric carbon via plant roots in natural and agricultural ecosystems: why and how","volume":"367","author":"Kell","year":"2012","journal-title":"Philos. Trans. R Soc. Lond. B Biol. Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0065","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2021.636709","article-title":"Crops for carbon farming","volume":"12","author":"Jansson","year":"2021","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0070","first-page":"567","article-title":"Quantifying carbon for agricultural soil management: from the current status toward a global soil information system","volume":"10","author":"Paustian","year":"2019","journal-title":"Carbon Manag."},{"key":"10.1016\/j.tplants.2025.11.006_bb0075","doi-asserted-by":"crossref","first-page":"540","DOI":"10.3390\/microorganisms10030540","article-title":"Trends in microbial community composition and function by soil depth","volume":"10","author":"Naylor","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.tplants.2025.11.006_bb0080","doi-asserted-by":"crossref","DOI":"10.1016\/j.envexpbot.2022.105010","article-title":"Heat and drought priming induce tolerance to subsequent heat and drought stress by regulating leaf photosynthesis, root morphology, and antioxidant defense in maize seedlings","volume":"202","author":"Ru","year":"2022","journal-title":"Environ. Exp. Bot."},{"key":"10.1016\/j.tplants.2025.11.006_bb0085","doi-asserted-by":"crossref","first-page":"2077","DOI":"10.1111\/pbi.13889","article-title":"ABA-inducible DEEPER ROOTING 1 improves adaptation of maize to water deficiency","volume":"20","author":"Feng","year":"2022","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0090","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1007\/s11104-023-06255-5","article-title":"Deep roots: implications for nitrogen uptake and drought tolerance among winter wheat cultivars","volume":"500","author":"Odone","year":"2024","journal-title":"Plant Soil"},{"key":"10.1016\/j.tplants.2025.11.006_bb0095","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1007\/s13593-023-00876-x","article-title":"Current controversies on mechanisms controlling soil carbon storage: implications for interactions with practitioners and policy-makers. A review","volume":"43","author":"Derrien","year":"2023","journal-title":"Agron. Sustain. Dev."},{"key":"10.1016\/j.tplants.2025.11.006_bb0100","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/j.orggeochem.2016.04.012","article-title":"Enhanced extractability of cutin- and suberin-derived organic matter with demineralization implies physical protection over chemical recalcitrance in soil","volume":"97","author":"Lin","year":"2016","journal-title":"Org. Geochem."},{"key":"10.1016\/j.tplants.2025.11.006_bb0105","doi-asserted-by":"crossref","first-page":"1573","DOI":"10.1016\/j.orggeochem.2006.05.002","article-title":"Organic matter stabilization in young calcareous soils as revealed by density fractionation and analysis of lignin-derived constituents","volume":"37","author":"Gr\u00fcnewald","year":"2006","journal-title":"Org. Geochem."},{"key":"10.1016\/j.tplants.2025.11.006_bb0110","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1016\/j.rser.2012.12.038","article-title":"Carbon sequestration and the role of biological carbon mitigation: a review","volume":"21","author":"Farrelly","year":"2013","journal-title":"Renew. Sust. Energ. Rev."},{"key":"10.1016\/j.tplants.2025.11.006_bb0115","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1080\/21645698.2015.1129937","article-title":"Genome editing for crop improvement: challenges and opportunities","volume":"6","author":"Abdallah","year":"2015","journal-title":"GM Crops Food"},{"key":"10.1016\/j.tplants.2025.11.006_bb0120","unstructured":"Granot, D. et al. Agricultural Research Organization of Israel Ministry of Agriculture. Use of fructokinases and sucrose synthases for increasing cell wall polymers, WO; WO 2013\/072868 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0125","unstructured":"Limor, P.G. et al. Evogene Ltd. Isolated polynucleotides and polypeptides, and methods of using same for increasing plant yield and\/or agricultural characteristics, WO; WO 2013\/179211 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0130","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1126\/science.aai8878","article-title":"Improving photosynthesis and crop productivity by accelerating recovery from photoprotection","volume":"354","author":"Kromdijk","year":"2016","journal-title":"Science"},{"key":"10.1016\/j.tplants.2025.11.006_bb0135","unstructured":"Silva, H.A. et al. Universidade Federal do Rio de Janeiro UFRJ. Method for promoting an increase in plant biomass, productivity and drought resistance, WO; WO 2015\/127521 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0140","unstructured":"Juha, I. et al. Stora Enso Oyj. Method for improving stem volume growth and biomass production in trees, WO; WO 2015\/101709 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0145","article-title":"Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension","volume":"8","author":"Ma","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.tplants.2025.11.006_bb0150","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1007\/s11032-014-0016-4","article-title":"Regulation of the \u03b1-expansin gene OsEXPA8 expression affects root system architecture in transgenic rice plants","volume":"34","author":"Wang","year":"2014","journal-title":"Mol. Breed."},{"key":"10.1016\/j.tplants.2025.11.006_bb0155","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1007\/s12298-021-00976-6","article-title":"Overexpression of SlHSP90.2 leads to altered root biomass and architecture in tomato (Solanum lycopersicum)","volume":"27","author":"Yadav","year":"2021","journal-title":"Physiol. Mol. Biol. Plants"},{"key":"10.1016\/j.tplants.2025.11.006_bb0160","unstructured":"Xiaoling, D. et al. Oil Crops Research Institute of Chinese Academy of Agriculture Sciences. Application of BnaNADK3 gene related to lateral root number in rapeseed breeding, CN; CN 118064496 A"},{"key":"10.1016\/j.tplants.2025.11.006_bb0165","doi-asserted-by":"crossref","first-page":"3024","DOI":"10.1101\/gad.852200","article-title":"Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development","volume":"14","author":"Xie","year":"2000","journal-title":"Genes Dev."},{"key":"10.1016\/j.tplants.2025.11.006_bb0170","doi-asserted-by":"crossref","first-page":"692","DOI":"10.1111\/tpj.13413","article-title":"Poplar Ptab1-like enhances lateral root formation and biomass growth under drought stress","volume":"89","author":"Dash","year":"2017","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0175","unstructured":"Vu, J. et al. Salk Institute for Biological Studies. Expression of ipt7 from tss promoter increases root mass and carbon sequestration, WO; WO 2021\/226306 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0180","unstructured":"De Rybel, B. et al. Vib Vzw, Universiteit Gent. Means and methods for increasing the root size of crops, WO; WO 2024\/184443 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0185","unstructured":"Li, P. et al. Yangzhou University. Application of ZmbZIP89 gene in regulation and control of lateral root development and drought tolerance of corn, CN; CN 119061022 A"},{"key":"10.1016\/j.tplants.2025.11.006_bb0190","doi-asserted-by":"crossref","first-page":"400","DOI":"10.1016\/j.cell.2019.06.021","article-title":"Root system depth in arabidopsis is shaped by EXOCYST70A3 via the dynamic modulation of auxin transport","volume":"178","author":"Ogura","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0195","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2201350119","article-title":"Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism","volume":"119","author":"Fusi","year":"2022","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2025.11.006_bb0200","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2101526118","article-title":"ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF-containing protein that controls root growth angle in barley and wheat","volume":"118","author":"Kirschner","year":"2021","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2025.11.006_bb0205","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1111\/tpj.13470","article-title":"DRO1 influences root system architecture in Arabidopsis and Prunus species","volume":"89","author":"Guseman","year":"2017","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0210","unstructured":"Crawford, B.C.W. Pairwise Plants Services, Inc. Methods and compositions for modifying root architecture in plants, WO; WO 2025\/019522 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0215","unstructured":"O\u2019Connor, D.L. et al. Pairwise Plants Services, Inc. Methods and compositions for modifying root architecture and\/or improving plant yield traits, WO; WO 2023\/215809 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0220","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1016\/j.celrep.2019.06.041","article-title":"Molecular mechanisms driving switch behavior in xylem cell differentiation","volume":"28","author":"Turco","year":"2019","journal-title":"Cell Rep."},{"key":"10.1016\/j.tplants.2025.11.006_bb0225","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1105\/tpc.108.063321","article-title":"MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis","volume":"21","author":"Zhou","year":"2009","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0230","doi-asserted-by":"crossref","first-page":"2763","DOI":"10.1105\/tpc.108.061325","article-title":"A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in arabidopsis","volume":"20","author":"Zhong","year":"2008","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0235","unstructured":"Apuya, N. et al. Ceres Inc. Modulating lignin in plants, WO; WO 2008\/069878 A2"},{"key":"10.1016\/j.tplants.2025.11.006_bb0240","unstructured":"Brady, S. and Manzano Fernandez C. The University of California. Genes controlling barrier formation in roots, WO; WO 2024\/081375 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0245","unstructured":"Busch, W. et al. Salk Institute for Biological Studies. Compositions and methods for increasing periderm in plant roots, WO; WO 2023\/164515 A2"},{"key":"10.1016\/j.tplants.2025.11.006_bb0250","unstructured":"Brady. S.M. et al. University of California San Diego. Suberin biosynthetic genes and regulators, WO; WO 2021\/202978 A2"},{"key":"10.1016\/j.tplants.2025.11.006_bb0255","unstructured":"Law, J.A.M. et al. Salk Institute for Biological Studies. Engineering increased suberin levels by altering gene expression patterns in a cell-type specific manner. WO; WO 2022\/082020 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0260","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1111\/tpj.14711","article-title":"SUBERMAN regulates developmental suberization of the Arabidopsis root endodermis","volume":"102","author":"Cohen","year":"2020","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0265","doi-asserted-by":"crossref","first-page":"6117","DOI":"10.3390\/ijms20246117","article-title":"Overexpression of ANAC046 promotes suberin biosynthesis in roots of Arabidopsis thaliana","volume":"20","author":"Mahmood","year":"2019","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0270","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1111\/pbi.12956","article-title":"Chromatin interacting factor OsVIL2 increases biomass and rice grain yield","volume":"17","author":"Yang","year":"2019","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0275","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1007\/s00425-024-04526-8","article-title":"The PATROL1 function in roots contributes to the increase in shoot biomass","volume":"260","author":"Notaguchi","year":"2024","journal-title":"Planta"},{"key":"10.1016\/j.tplants.2025.11.006_bb0280","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1007\/s00709-019-01458-z","article-title":"ALTERED MERISTEM PROGRAM 1 promotes growth and biomass accumulation influencing guard cell aperture and photosynthetic efficiency in Arabidopsis","volume":"257","author":"L\u00f3pez-Garc\u00eda","year":"2020","journal-title":"Protoplasma"},{"key":"10.1016\/j.tplants.2025.11.006_bb0285","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1111\/j.1365-313X.2011.04691.x","article-title":"The APC\/C subunit 10 plays an essential role in cell proliferation during leaf development","volume":"68","author":"Eloy","year":"2011","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0290","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1093\/pcp\/pcp184","article-title":"The bHLH transcription factor SPATULA controls final leaf size in Arabidopsis thaliana","volume":"51","author":"Ichihashi","year":"2009","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0295","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2229-13-1","article-title":"The bHLH transcription factor SPATULA regulates root growth by controlling the size of the root meristem","volume":"13","author":"Makkena","year":"2013","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0300","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2021.715391","article-title":"Challenges and approaches to crop improvement through C3-to-C4 engineering","volume":"12","author":"Cui","year":"2021","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0305","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1111\/j.1399-3054.1997.tb01066.x","article-title":"Inhibition of fructokinase and sucrose synthase by cytosolic levels of fructose in young tomato fruit undergoing transient starch synthesis","volume":"101","author":"Schaffer","year":"1997","journal-title":"Physiol. Plant."},{"key":"10.1016\/j.tplants.2025.11.006_bb0310","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1186\/s13068-021-01989-9","article-title":"MdFRK2-mediated sugar metabolism accelerates cellulose accumulation in apple and poplar","volume":"14","author":"Su","year":"2021","journal-title":"Biotechnol. Biofuels"},{"key":"10.1016\/j.tplants.2025.11.006_bb0315","doi-asserted-by":"crossref","first-page":"899","DOI":"10.1071\/FP15035","article-title":"Constitutively overexpressing a tomato fructokinase gene LeFRK1 in cotton (Gossypium hirsutum L. cv. Coker 312) positively affects plant vegetative growth, boll number and seed cotton yield","volume":"42","author":"Mukherjee","year":"2015","journal-title":"Funct. Plant Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0320","doi-asserted-by":"crossref","DOI":"10.1002\/fes3.435","article-title":"Improving crop yield potential: Underlying biological processes and future prospects","volume":"12","author":"Burgess","year":"2023","journal-title":"Food Energy Secur."},{"key":"10.1016\/j.tplants.2025.11.006_bb0325","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1111\/gcb.15375","article-title":"30 years of free-air carbon dioxide enrichment (FACE): what have we learned about future crop productivity and its potential for adaptation?","volume":"27","author":"Ainsworth","year":"2021","journal-title":"Glob. Chang. Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0330","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1186\/gb-2009-10-12-248","article-title":"The WUS homeobox-containing (WOX) protein family","volume":"10","author":"van der Graaff","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0335","first-page":"1503","article-title":"WUSCHEL-related homeobox gene PagWOX11\/12a responds to drought stress by enhancing root elongation and biomass growth in poplar","volume":"71","author":"Wang","year":"2019","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.tplants.2025.11.006_bb0340","article-title":"Auxin in root development","volume":"14","author":"Roychoudhry","year":"2022","journal-title":"Cold Spring Harb. Perspect. Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0345","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1016\/j.cub.2013.03.064","article-title":"An auxin transport mechanism restricts positive orthogravitropism in lateral roots","volume":"23","author":"Rosquete","year":"2013","journal-title":"Curr. Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0350","doi-asserted-by":"crossref","first-page":"1097","DOI":"10.1038\/ng.2725","article-title":"Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions","volume":"45","author":"Uga","year":"2013","journal-title":"Nat. Genet."},{"key":"10.1016\/j.tplants.2025.11.006_bb0355","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1146\/annurev.arplant.54.031902.134938","article-title":"Lignin biosynthesis","volume":"54","author":"Boerjan","year":"2003","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0360","doi-asserted-by":"crossref","first-page":"1200","DOI":"10.1016\/j.soilbio.2010.03.017","article-title":"Fate of lignins in soils: a review","volume":"42","author":"Thevenot","year":"2010","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.tplants.2025.11.006_bb0365","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1111\/j.1365-313X.2011.04514.x","article-title":"VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation","volume":"66","author":"Yamaguchi","year":"2011","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0370","doi-asserted-by":"crossref","first-page":"906","DOI":"10.1104\/pp.110.154013","article-title":"VASCULAR-RELATED NAC-DOMAIN 6 and VASCULAR-RELATED NAC-DOMAIN 7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system","volume":"153","author":"Yamaguchi","year":"2010","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0375","doi-asserted-by":"crossref","first-page":"1855","DOI":"10.1101\/gad.1331305","article-title":"Transcription switches for protoxylem and metaxylem vessel formation","volume":"19","author":"Kubo","year":"2005","journal-title":"Genes Dev."},{"key":"10.1016\/j.tplants.2025.11.006_bb0380","doi-asserted-by":"crossref","first-page":"3461","DOI":"10.1105\/tpc.110.075036","article-title":"Arabidopsis VASCULAR-RELATED NAC-DOMAIN 6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation","volume":"22","author":"Ohashi-Ito","year":"2010","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0385","doi-asserted-by":"crossref","first-page":"2776","DOI":"10.1105\/tpc.107.053678","article-title":"The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis","volume":"19","author":"Zhong","year":"2007","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0390","doi-asserted-by":"crossref","first-page":"1950","DOI":"10.1093\/pcp\/pcp139","article-title":"MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis","volume":"50","author":"McCarthy","year":"2009","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0395","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1111\/j.1365-313X.2009.03989.x","article-title":"Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis","volume":"60","author":"Ko","year":"2009","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0400","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1111\/j.1365-313x.2012.05124.x","article-title":"MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis","volume":"73","author":"Kim","year":"2013","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0405","doi-asserted-by":"crossref","first-page":"6150","DOI":"10.1093\/emboj\/19.22.6150","article-title":"Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis","volume":"19","author":"Jin","year":"2000","journal-title":"EMBO J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0410","doi-asserted-by":"crossref","first-page":"979","DOI":"10.1111\/j.1365-313X.2004.02280.x","article-title":"AtMYB32 is required for normal pollen development in Arabidopsis thaliana","volume":"40","author":"Preston","year":"2004","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0415","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1105\/tpc.10.2.135","article-title":"The AmMYB308 and AmMYB330 transcription factors from antirrhinum regulate phenylpropanoid and lignin biosynthesis in transgenic tobacco","volume":"10","author":"Tamagnone","year":"1998","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0420","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1111\/j.1469-8137.2011.03922.x","article-title":"Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks","volume":"193","author":"Shen","year":"2012","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0425","unstructured":"Boerjan, C.H., et al. University of Dundee, VIB. Method for modifying lignin biosynthesis in plants, WO; WO 2013\/167902 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0430","unstructured":"Boerjan, W. et al. VIB VZW, Universiteit Gent. Means and methods to increase plant biomass, WO; WO 2019\/053073 A1"},{"key":"10.1016\/j.tplants.2025.11.006_bb0435","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2021.102153","article-title":"Building and breaking of a barrier: suberin plasticity and function in the endodermis","volume":"64","author":"Shukla","year":"2021","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0440","doi-asserted-by":"crossref","first-page":"808","DOI":"10.1111\/j.1365-2389.2012.01476.x","article-title":"Cutin and suberin biomarkers as tracers for the turnover of shoot and root derived organic matter along a chronosequence of Ecuadorian pasture soils","volume":"63","author":"Hamer","year":"2012","journal-title":"Eur. J. Soil Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0445","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1186\/1471-2164-15-613","article-title":"Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source","volume":"15","author":"Martins","year":"2014","journal-title":"BMC Genomics"},{"key":"10.1016\/j.tplants.2025.11.006_bb0450","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.ibiod.2005.10.004","article-title":"Bark decay by the white-rot fungus Lentinula edodes: polysaccharide loss, lignin resistance and the unmasking of suberin","volume":"57","author":"Vane","year":"2006","journal-title":"Int. Biodeterior. Biodegradation"},{"key":"10.1016\/j.tplants.2025.11.006_bb0455","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1093\/plcell\/koac303","article-title":"Climate change challenges, plant science solutions","volume":"35","author":"Eckardt","year":"2022","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0460","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1111\/gcb.12113","article-title":"The microbial efficiency-matrix stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?","volume":"19","author":"Cotrufo","year":"2013","journal-title":"Glob. Chang. Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0465","doi-asserted-by":"crossref","DOI":"10.1038\/ncomms13630","article-title":"Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls","volume":"7","author":"Kallenbach","year":"2016","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2025.11.006_bb0470","doi-asserted-by":"crossref","first-page":"6768","DOI":"10.1126\/science.adu4235","article-title":"Localized glutamine leakage drives the spatial structure of root microbial colonization","volume":"390","author":"Tsai","year":"2025","journal-title":"Science"},{"key":"10.1016\/j.tplants.2025.11.006_bb0475","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1016\/j.tplants.2022.04.009","article-title":"Soil carbon sequestration by root exudates","volume":"27","author":"Panchal","year":"2022","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0480","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/jxb\/erv447","article-title":"How can we make plants grow faster? A source\u2013sink perspective on growth rate","volume":"67","author":"White","year":"2015","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.tplants.2025.11.006_bb0485","doi-asserted-by":"crossref","first-page":"152","DOI":"10.17221\/2\/2019-PSE","article-title":"Exogenous arbuscular mycorrhizal fungi increase soil organic carbon and change microbial community in poplar rhizosphere","volume":"65","author":"Zhang","year":"2019","journal-title":"Plant Soil Environ."},{"key":"10.1016\/j.tplants.2025.11.006_bb0490","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1038\/nature10386","article-title":"Persistence of soil organic matter as an ecosystem property","volume":"478","author":"Schmidt","year":"2011","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2025.11.006_bb0495","doi-asserted-by":"crossref","first-page":"4430","DOI":"10.1111\/gcb.13767","article-title":"Soil organic carbon dynamics jointly controlled by climate, carbon inputs, soil properties and soil carbon fractions","volume":"23","author":"Luo","year":"2017","journal-title":"Glob. Chang. Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0500","series-title":"Assessment of Potential Greenhouse Gas Mitigation from Changes to Crop Root Mass and Architecture","author":"Paustian","year":"2016"},{"key":"10.1016\/j.tplants.2025.11.006_bb0505","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1007\/s10533-004-0360-2","article-title":"Agricultural management impacts on soil organic carbon storage under moist and dry climatic conditions of temperate and tropical regions","volume":"72","author":"Ogle","year":"2005","journal-title":"Biogeochemistry"},{"key":"10.1016\/j.tplants.2025.11.006_bb0510","doi-asserted-by":"crossref","first-page":"8","DOI":"10.3389\/fclim.2019.00008","article-title":"Soil C sequestration as a biological negative emission strategy","volume":"1","author":"Paustian","year":"2019","journal-title":"Front. Clim."},{"key":"10.1016\/j.tplants.2025.11.006_bb0515","doi-asserted-by":"crossref","first-page":"41","DOI":"10.3389\/fenvs.2017.00041","article-title":"Accounting for carbon stocks in soils and measuring GHGs emission fluxes from soils: do we have the necessary standards?","volume":"5","author":"Bispo","year":"2017","journal-title":"Front. Environ. Sci."},{"key":"10.1016\/j.tplants.2025.11.006_bb0520","doi-asserted-by":"crossref","DOI":"10.1016\/j.eja.2020.126130","article-title":"Root to shoot and carbon to nitrogen ratios of maize and soybean crops in the US Midwest","volume":"120","author":"Ord\u00f3\u00f1ez","year":"2020","journal-title":"Eur. J. Agron."},{"key":"10.1016\/j.tplants.2025.11.006_bb0525","doi-asserted-by":"crossref","DOI":"10.1016\/j.fcr.2020.107870","article-title":"Root phenotypes at maturity in diverse wheat and triticale genotypes grown in three field experiments: relationships to shoot selection, biomass, grain yield, flowering time, and environment","volume":"255","author":"Severini","year":"2020","journal-title":"Field Crop Res."},{"key":"10.1016\/j.tplants.2025.11.006_bb0530","doi-asserted-by":"crossref","first-page":"3121","DOI":"10.1038\/s41467-019-11057-4","article-title":"Microbial spatial footprint as a driver of soil carbon stabilization","volume":"10","author":"Kravchenko","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2025.11.006_bb0535","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1111\/gcbb.12232","article-title":"Carbon sequestration potential in perennial bioenergy crops: the importance of organic matter inputs and its physical protection","volume":"8","author":"Chimento","year":"2016","journal-title":"Glob. Change Biol. Bioenergy"},{"key":"10.1016\/j.tplants.2025.11.006_bb0540","doi-asserted-by":"crossref","first-page":"2377","DOI":"10.1242\/dev.126.11.2377","article-title":"CRABS CLAW and SPATULA, two Arabidopsis genes that control carpel development in parallel with AGAMOUS","volume":"126","author":"Alvarez","year":"1999","journal-title":"Development"},{"key":"10.1016\/j.tplants.2025.11.006_bb0545","doi-asserted-by":"crossref","first-page":"1553","DOI":"10.1093\/plphys\/kiac158","article-title":"SPATULA and ALCATRAZ confer female sterility and fruit cavity via mediating pistil development in cucumber","volume":"189","author":"Cheng","year":"2022","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0550","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1111\/tpj.14352","article-title":"Expression and function of the bHLH genes ALCATRAZ and SPATULA in selected Solanaceae species","volume":"99","author":"Ortiz-Ram\u00edrez","year":"2019","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0555","doi-asserted-by":"crossref","first-page":"1363","DOI":"10.1016\/j.soilbio.2010.04.003","article-title":"Priming effects: Interactions between living and dead organic matter","volume":"42","author":"Kuzyakov","year":"2010","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.tplants.2025.11.006_bb0560","doi-asserted-by":"crossref","first-page":"216","DOI":"10.3389\/fmicb.2013.00216","article-title":"Rhizosphere priming: a nutrient perspective","volume":"4","author":"Dijkstra","year":"2013","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0565","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2020.108069","article-title":"Strong priming of soil organic matter induced by frequent input of labile carbon","volume":"152","author":"Zhou","year":"2021","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.tplants.2025.11.006_bb0570","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1146\/annurev-arplant-050718-100434","article-title":"Molecular mechanisms of plant regeneration","volume":"70","author":"Ikeuchi","year":"2019","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.tplants.2025.11.006_bb0575","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1038\/s41477-021-01015-8","article-title":"Pluripotency acquisition in the middle cell layer of callus is required for organ regeneration","volume":"7","author":"Zhai","year":"2021","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2025.11.006_bb0580","doi-asserted-by":"crossref","DOI":"10.1111\/tpj.70090","article-title":"The switch-liker's guide to plant synthetic gene circuits","volume":"121","author":"Lloyd","year":"2025","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0585","doi-asserted-by":"crossref","first-page":"1844","DOI":"10.1038\/s41467-023-37607-5","article-title":"An integrase toolbox to record gene-expression during plant development","volume":"14","author":"Guiziou","year":"2023","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2025.11.006_bb0590","doi-asserted-by":"crossref","first-page":"3041","DOI":"10.1016\/j.cell.2021.04.014","article-title":"A cis-regulatory atlas in maize at single-cell resolution","volume":"184","author":"Marand","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0595","doi-asserted-by":"crossref","DOI":"10.1126\/science.adf4721","article-title":"Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root","volume":"379","author":"Nolan","year":"2023","journal-title":"Science"},{"key":"10.1016\/j.tplants.2025.11.006_bb0600","doi-asserted-by":"crossref","DOI":"10.1126\/science.aba5531","article-title":"Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization","volume":"374","author":"Roszak","year":"2021","journal-title":"Science"},{"key":"10.1016\/j.tplants.2025.11.006_bb0605","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1016\/j.devcel.2022.01.008","article-title":"A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants","volume":"57","author":"Shahan","year":"2022","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0610","doi-asserted-by":"crossref","DOI":"10.1126\/science.aay4970","article-title":"Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions","volume":"370","author":"Wendrich","year":"2020","journal-title":"Science"},{"key":"10.1016\/j.tplants.2025.11.006_bb0615","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1016\/j.cell.2024.10.050","article-title":"A spatially resolved multi-omic single-cell atlas of soybean development","volume":"188","author":"Zhang","year":"2025","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2025.11.006_bb0620","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1111\/tpj.15560","article-title":"Harnessing root architecture to address global challenges","volume":"109","author":"Lynch","year":"2022","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2025.11.006_bb0625","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1007\/s11104-021-05010-y","article-title":"Root anatomy and soil resource capture","volume":"466","author":"Lynch","year":"2021","journal-title":"Plant Soil"}],"container-title":["Trends in Plant Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1360138525003280?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1360138525003280?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,4,8]],"date-time":"2026-04-08T02:27:01Z","timestamp":1775615221000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1360138525003280"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,4]]},"references-count":125,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2026,4]]}},"alternative-id":["S1360138525003280"],"URL":"https:\/\/doi.org\/10.1016\/j.tplants.2025.11.006","relation":{},"ISSN":["1360-1385"],"issn-type":[{"value":"1360-1385","type":"print"}],"subject":[],"published":{"date-parts":[[2026,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Molecular approaches to increasing plant root carbon","name":"articletitle","label":"Article Title"},{"value":"Trends in Plant Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.tplants.2025.11.006","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}]}}