{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T19:39:54Z","timestamp":1792784394707,"version":"4.5.0"},"reference-count":107,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100008766","name":"Fujian Agriculture and Forestry University","doi-asserted-by":"publisher","award":["725025010"],"award-info":[{"award-number":["725025010"]}],"id":[{"id":"10.13039\/501100008766","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008766","name":"Fujian Agriculture and Forestry University","doi-asserted-by":"publisher","award":["72202200205"],"award-info":[{"award-number":["72202200205"]}],"id":[{"id":"10.13039\/501100008766","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32371980"],"award-info":[{"award-number":["32371980"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"},{"id":"https:\/\/ror.org\/01h0zpd94","id-type":"ROR","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100018544","name":"Ningbo Municipal Science and Technology Innovative Research Team","doi-asserted-by":"publisher","award":["KFB24096A"],"award-info":[{"award-number":["KFB24096A"]}],"id":[{"id":"10.13039\/501100018544","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100018544","name":"Ningbo Municipal Science and Technology Innovative Research Team","doi-asserted-by":"publisher","award":["KFB23180"],"award-info":[{"award-number":["KFB23180"]}],"id":[{"id":"10.13039\/501100018544","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2025M781858"],"award-info":[{"award-number":["2025M781858"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003392","name":"Natural Science Foundation of Fujian Province","doi-asserted-by":"publisher","award":["2025J02014"],"award-info":[{"award-number":["2025J02014"]}],"id":[{"id":"10.13039\/501100003392","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["2023YFD2200201"],"award-info":[{"award-number":["2023YFD2200201"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Trends in Plant Science"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.tplants.2026.08.011","type":"journal-article","created":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T20:33:50Z","timestamp":1789504430000},"update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Advances of N6-methyladenosine RNA methylation in tree species"],"prefix":"10.1016","author":[{"given":"Huihui","family":"Wang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huiyuan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoxia","family":"Jin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yusen","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Liangzhen","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bochen","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3810-2411","authenticated-orcid":false,"given":"Lianfeng","family":"Gu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.tplants.2026.08.011_bb0005","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1016\/j.stem.2014.09.019","article-title":"m6A RNA modification controls cell fate transition in mammalian embryonic stem cells","volume":"15","author":"Batista","year":"2014","journal-title":"Cell Stem Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0010","doi-asserted-by":"crossref","DOI":"10.1242\/dev.189134","article-title":"Recurrent requirement for the m6A-ECT2\/ECT3\/ECT4 axis in the control of cell proliferation during plant organogenesis","volume":"147","author":"Arribas-Hernandez","year":"2020","journal-title":"Development"},{"key":"10.1016\/j.tplants.2026.08.011_bb0015","doi-asserted-by":"crossref","first-page":"2995","DOI":"10.1105\/tpc.16.00912","article-title":"ALKBH10B is an RNA N6-methyladenosine demethylase affecting Arabidopsis floral transition","volume":"29","author":"Duan","year":"2017","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0020","doi-asserted-by":"crossref","first-page":"1581","DOI":"10.1038\/s41587-021-00982-9","article-title":"RNA demethylation increases the yield and biomass of rice and potato plants in field trials","volume":"39","author":"Yu","year":"2021","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0025","doi-asserted-by":"crossref","first-page":"1797","DOI":"10.1111\/pce.14844","article-title":"N6-methyladenosine mRNA methylation positively regulated the response of poplar to salt stress","volume":"47","author":"Zhao","year":"2024","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.tplants.2026.08.011_bb0030","doi-asserted-by":"crossref","first-page":"1194","DOI":"10.1111\/pbi.13149","article-title":"N6-methyladenosine regulatory machinery in plants: composition, function and evolution","volume":"17","author":"Yue","year":"2019","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0035","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.molp.2019.12.007","article-title":"Epigenetic modifications of mRNA and DNA in plants","volume":"13","author":"Liang","year":"2020","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2026.08.011_bb0040","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2021.102047","article-title":"N6-methyladenosine modification underlies messenger RNA metabolism and plant development","volume":"63","author":"Shao","year":"2021","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0045","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhad284","article-title":"Exploring N6-methyladenosine (m6A) modification in tree species: opportunities and challenges","volume":"11","author":"Ramakrishnan","year":"2024","journal-title":"Hortic. Res."},{"key":"10.1016\/j.tplants.2026.08.011_bb0050","doi-asserted-by":"crossref","first-page":"1092","DOI":"10.1111\/1755-0998.13770","article-title":"Chromosome-level genome assembly of a triploid poplar Populus alba \u2018Berolinensis\u2019","volume":"23","author":"Chen","year":"2023","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.tplants.2026.08.011_bb0055","doi-asserted-by":"crossref","DOI":"10.1093\/gigascience\/giy115","article-title":"Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis)","volume":"7","author":"Zhao","year":"2018","journal-title":"Gigascience"},{"key":"10.1016\/j.tplants.2026.08.011_bb0060","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1111\/jipb.13217","article-title":"Allele-aware chromosome-scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro)","volume":"64","author":"Zheng","year":"2022","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0065","doi-asserted-by":"crossref","first-page":"1018","DOI":"10.3390\/genes13061018","article-title":"Genome-wide identification of m6A writers, erasers and readers in poplar 84K","volume":"13","author":"Sun","year":"2022","journal-title":"Genes (Basel)"},{"key":"10.1016\/j.tplants.2026.08.011_bb0070","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1105\/tpc.108.058883","article-title":"MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor","volume":"20","author":"Zhong","year":"2008","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0075","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.devcel.2016.06.008","article-title":"N6-methyladenosine RNA modification regulates shoot stem cell fate in Arabidopsis","volume":"38","author":"Shen","year":"2016","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0080","doi-asserted-by":"crossref","first-page":"1283","DOI":"10.1104\/pp.103.028050","article-title":"The immunophilin-interacting protein AtFIP37 from Arabidopsis is essential for plant development and is involved in trichome endoreduplication","volume":"134","author":"Vespa","year":"2004","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0085","doi-asserted-by":"crossref","first-page":"468","DOI":"10.1038\/s41477-025-01945-7","article-title":"NERD-dependent m6A modification of the nascent FLC transcript regulates flowering time in Arabidopsis","volume":"11","author":"Shao","year":"2025","journal-title":"Nat. Plants"},{"key":"10.1016\/j.tplants.2026.08.011_bb0090","doi-asserted-by":"crossref","first-page":"1901","DOI":"10.1093\/plcell\/koad070","article-title":"Functional interdependence of N6-methyladenosine methyltransferase complex subunits in Arabidopsis","volume":"35","author":"Shen","year":"2023","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0095","doi-asserted-by":"crossref","first-page":"21785","DOI":"10.1073\/pnas.2003733117","article-title":"mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana","volume":"117","author":"Bhat","year":"2020","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2026.08.011_bb0100","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/s13059-022-02612-2","article-title":"FIONA1 is an RNA N6-methyladenosine methyltransferase affecting Arabidopsis photomorphogenesis and flowering","volume":"23","author":"Wang","year":"2022","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0105","article-title":"FIONA1-mediated m6A modification regulates the floral transition in Arabidopsis","volume":"9","author":"Xu","year":"2022","journal-title":"Adv. Sci. (Weinh.)"},{"key":"10.1016\/j.tplants.2026.08.011_bb0110","doi-asserted-by":"crossref","first-page":"2462","DOI":"10.3390\/ijms21072462","article-title":"MTA, an RNA m6A methyltransferase, enhances drought tolerance by regulating the development of trichomes and roots in poplar","volume":"21","author":"Lu","year":"2020","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.tplants.2026.08.011_bb0115","doi-asserted-by":"crossref","first-page":"1294","DOI":"10.1111\/nph.18069","article-title":"MdMTA-mediated m6A modification enhances drought tolerance by promoting mRNA stability and translation efficiency of genes involved in lignin deposition and oxidative stress","volume":"234","author":"Hou","year":"2022","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0120","doi-asserted-by":"crossref","DOI":"10.1016\/j.postharvbio.2026.114603","article-title":"The m6A methyltransferase subunit MTA70-4 confers resistance against Penicillium expansum in pear (Pyrus pyrifolia Nakai)","volume":"242","author":"Xu","year":"2026","journal-title":"Postharvest Biol. Technol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0125","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1111\/nph.71021","article-title":"The LkMTA2\/LkMTB8\u2013LkERF1\u2013LkEXPA8 cascade regulates xylem cell expansion in larch","volume":"250","author":"Lyu","year":"2026","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0130","doi-asserted-by":"crossref","first-page":"1439","DOI":"10.1016\/j.devcel.2024.12.033","article-title":"Nanopore RNA direct sequencing identifies that m6A modification is essential for sorbitol-controlled resistance to Alternaria alternata in apple","volume":"60","author":"Song","year":"2025","journal-title":"Dev. Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0135","doi-asserted-by":"crossref","DOI":"10.1111\/tpj.70537","article-title":"Dynamics of N6-methyladenosine (m6A) under salt stress in poplar and the intrinsic mechanism by which METTL4 (PagMTC) enhances salt tolerance","volume":"124","author":"Wang","year":"2025","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0140","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/j.gene.2014.01.039","article-title":"Genome-wide identification of members in the YTH domain-containing RNA-binding protein family in apple and expression analysis of their responsiveness to senescence and abiotic stresses","volume":"538","author":"Wang","year":"2014","journal-title":"Gene"},{"key":"10.1016\/j.tplants.2026.08.011_bb0145","doi-asserted-by":"crossref","first-page":"952","DOI":"10.1105\/tpc.17.00833","article-title":"An m6A-YTH module controls developmental timing and morphogenesis in Arabidopsis","volume":"30","author":"Arribas-Hernandez","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0150","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.72377","article-title":"The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation","volume":"10","author":"Arribas-Hernandez","year":"2021","journal-title":"Elife"},{"key":"10.1016\/j.tplants.2026.08.011_bb0155","doi-asserted-by":"crossref","first-page":"2908","DOI":"10.1093\/plcell\/koae149","article-title":"The m6A reader ECT8 is an abiotic stress sensor that accelerates mRNA decay in Arabidopsis","volume":"36","author":"Cai","year":"2024","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0160","doi-asserted-by":"crossref","DOI":"10.1111\/tpj.70637","article-title":"ECT10 is an m6A reader that negatively regulates the drought stress response in Arabidopsis by modulating mRNA stability","volume":"124","author":"Han","year":"2025","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0165","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1146\/annurev-cellbio-100616-060758","article-title":"Rethinking m6A readers, writers, and erasers","volume":"33","author":"Meyer","year":"2017","journal-title":"Annu. Rev. Cell Dev. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0170","doi-asserted-by":"crossref","first-page":"986","DOI":"10.1105\/tpc.17.00854","article-title":"The YTH domain protein ECT2 is an m6A reader required for normal trichome branching in Arabidopsis","volume":"30","author":"Scutenaire","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0175","doi-asserted-by":"crossref","first-page":"968","DOI":"10.1105\/tpc.17.00934","article-title":"The m6A reader ECT2 controls trichome morphology by affecting mRNA stability in Arabidopsis","volume":"30","author":"Wei","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0180","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1016\/j.molp.2021.01.014","article-title":"Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signals to control polyadenylation site choice in liquid-like nuclear bodies","volume":"14","author":"Song","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.tplants.2026.08.011_bb0185","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1111\/pbi.13733","article-title":"The m6A reader MhYTP2 regulates MdMLO19 mRNA stability and antioxidant genes translation efficiency conferring powdery mildew resistance in apple","volume":"20","author":"Guo","year":"2022","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0190","article-title":"The role of demethylase AlkB homologs in cancer","volume":"13","author":"Li","year":"2023","journal-title":"Front. Oncol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0195","doi-asserted-by":"crossref","first-page":"2361","DOI":"10.1111\/jipb.13394","article-title":"The RNA N6-methyladenosine demethylase ALKBH9B modulates ABA responses in Arabidopsis","volume":"64","author":"Tang","year":"2022","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0200","doi-asserted-by":"crossref","DOI":"10.1016\/j.envexpbot.2023.105306","article-title":"ALKBH10B-mediated m6A demethylation is crucial for drought tolerance by affecting mRNA stability in Arabidopisis","volume":"209","author":"Han","year":"2023","journal-title":"Environ. Exp. Bot."},{"key":"10.1016\/j.tplants.2026.08.011_bb0205","doi-asserted-by":"crossref","first-page":"2326","DOI":"10.1111\/nph.19976","article-title":"m6A demethylase OsALKBH5 is required for double-strand break formation and repair by affecting mRNA stability in rice meiosis","volume":"244","author":"Xue","year":"2024","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0210","doi-asserted-by":"crossref","first-page":"2410","DOI":"10.1111\/pbi.14354","article-title":"OsALKBH9-mediated m6A demethylation regulates tapetal PCD and pollen exine accumulation in rice","volume":"22","author":"Tang","year":"2024","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0215","article-title":"Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus","volume":"13","author":"Zhao","year":"2022","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2026.08.011_bb0220","doi-asserted-by":"crossref","DOI":"10.1016\/j.indcrop.2025.121831","article-title":"PagALKBH1A-mediated m6A demethylation reduces the resistance of 84 K poplar to cadmium stress","volume":"235","author":"Wang","year":"2025","journal-title":"Ind. Crop. Prod."},{"key":"10.1016\/j.tplants.2026.08.011_bb0225","doi-asserted-by":"crossref","DOI":"10.1093\/plphys\/kiaf457","article-title":"HyperTRIBE mapping of the RNA m6A demethylase ALKBH9 binding sites in bamboo reveals its role in plant defense","volume":"199","author":"Wang","year":"2025","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0230","doi-asserted-by":"crossref","first-page":"1489","DOI":"10.1016\/j.jia.2025.01.001","article-title":"Overexpression of the apple m6A demethylase gene MdALKBH1A regulates resistance to heat stress and fixed-carbon starvation","volume":"24","author":"Bao","year":"2025","journal-title":"J. Intgr. Agric."},{"key":"10.1016\/j.tplants.2026.08.011_bb0235","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2026.119579","article-title":"RNA demethylase CsALKBH8 enhances postharvest disease resistance of citrus fruit against Penicillium digitatum via m6A-mediated transcript regulation","volume":"240","author":"Li","year":"2026","journal-title":"Food Res. Int."},{"key":"10.1016\/j.tplants.2026.08.011_bb0240","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1016\/j.cell.2009.04.028","article-title":"An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein","volume":"137","author":"He","year":"2009","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0245","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1038\/s41592-019-0330-1","article-title":"Methods to study RNA-protein interactions","volume":"16","author":"Ramanathan","year":"2019","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0250","doi-asserted-by":"crossref","first-page":"1212","DOI":"10.1126\/science.1090095","article-title":"CLIP identifies Nova-regulated RNA networks in the brain","volume":"302","author":"Ule","year":"2003","journal-title":"Science"},{"key":"10.1016\/j.tplants.2026.08.011_bb0255","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1016\/j.cell.2016.03.007","article-title":"TRIBE: hijacking an RNA-editing enzyme to identify cell-specific targets of RNA-binding proteins","volume":"165","author":"McMahon","year":"2016","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0260","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/978-1-4939-2291-8_18","article-title":"RIP-Seq data analysis to determine RNA-protein associations","volume":"1269","author":"Zambelli","year":"2015","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0265","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1007\/978-1-4939-6380-5_7","article-title":"RIP: RNA immunoprecipitation","volume":"1480","author":"Gagliardi","year":"2016","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0270","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1016\/S1046-2023(02)00021-X","article-title":"Reversible cross-linking combined with immunoprecipitation to study RNA\u2013protein interactions in vivo","volume":"26","author":"Niranjanakumari","year":"2002","journal-title":"Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0275","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1186\/s13059-019-1771-7","article-title":"RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening","volume":"20","author":"Zhou","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0280","doi-asserted-by":"crossref","DOI":"10.1016\/j.celrep.2024.114597","article-title":"TMK4-mediated FIP37 phosphorylation regulates auxin-triggered N6-methyladenosine modification of auxin biosynthetic genes in Arabidopsis","volume":"43","author":"Li","year":"2024","journal-title":"Cell Rep."},{"key":"10.1016\/j.tplants.2026.08.011_bb0285","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1038\/nature07488","article-title":"HITS-CLIP yields genome-wide insights into brain alternative RNA processing","volume":"456","author":"Licatalosi","year":"2008","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2026.08.011_bb0290","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1016\/j.cell.2010.03.009","article-title":"Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP","volume":"141","author":"Hafner","year":"2010","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0295","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1038\/nsmb.1838","article-title":"iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution","volume":"17","author":"Konig","year":"2010","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0300","doi-asserted-by":"crossref","first-page":"508","DOI":"10.1038\/nmeth.3810","article-title":"Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)","volume":"13","author":"Van Nostrand","year":"2016","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0305","doi-asserted-by":"crossref","first-page":"6074","DOI":"10.1093\/nar\/gkx152","article-title":"sCLIP\u2014an integrated platform to study RNA\u2013protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs","volume":"45","author":"Kargapolova","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.tplants.2026.08.011_bb0310","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1038\/nmeth.3840","article-title":"irCLIP platform for efficient characterization of protein\u2013RNA interactions","volume":"13","author":"Zarnegar","year":"2016","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0315","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1261\/rna.064691.117","article-title":"Mechanistic implications of enhanced editing by a HyperTRIBE RNA-binding protein","volume":"24","author":"Xu","year":"2018","journal-title":"RNA"},{"key":"10.1016\/j.tplants.2026.08.011_bb0320","doi-asserted-by":"crossref","first-page":"5184","DOI":"10.1111\/pce.15494","article-title":"The RNA m6A methyltransferase PheMTA1 and PheMTA2 of moso bamboo regulate root development and resistance to salt stress in plant","volume":"48","author":"Wang","year":"2025","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.tplants.2026.08.011_bb0325","doi-asserted-by":"crossref","first-page":"3566","DOI":"10.1111\/pce.14447","article-title":"ALKBH9C, a potential RNA m6A demethylase, regulates the response of Arabidopsis to abiotic stresses and abscisic acid","volume":"45","author":"Amara","year":"2022","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.tplants.2026.08.011_bb0330","doi-asserted-by":"crossref","first-page":"1653","DOI":"10.1093\/treephys\/tpad074","article-title":"Inhibition of DNA and RNA methylation disturbs root development of moso bamboo","volume":"43","author":"Liufu","year":"2023","journal-title":"Tree Physiol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0335","doi-asserted-by":"crossref","first-page":"1017","DOI":"10.1093\/plphys\/kiac525","article-title":"Comprehensive profiling of epigenetic modifications in fast-growing Moso bamboo shoots","volume":"191","author":"Li","year":"2023","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0340","doi-asserted-by":"crossref","first-page":"1823","DOI":"10.1111\/jipb.13002","article-title":"Profiling of circular RNA N6-methyladenosine in Moso bamboo (Phyllostachys edulis) using nanopore-based direct RNA sequencing","volume":"62","author":"Wang","year":"2020","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0345","article-title":"Transcriptome-wide m6A methylation in natural yellow leaf of Catalpa fargesii","volume":"14","author":"Zhang","year":"2023","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.tplants.2026.08.011_bb0350","doi-asserted-by":"crossref","first-page":"1466","DOI":"10.1093\/plphys\/kiad112","article-title":"m6A mRNA modification promotes chilling tolerance and modulates gene translation efficiency in Arabidopsis","volume":"192","author":"Wang","year":"2023","journal-title":"Plant Physiol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0355","doi-asserted-by":"crossref","first-page":"1759","DOI":"10.1111\/tpj.15270","article-title":"N6-methyladenosine mRNA methylation is important for salt stress tolerance in Arabidopsis","volume":"106","author":"Hu","year":"2021","journal-title":"Plant J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0360","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1111\/pce.14807","article-title":"FIONA1-mediated mRNA m6A methylation regulates the response of Arabidopsis to salt stress","volume":"47","author":"Cai","year":"2024","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.tplants.2026.08.011_bb0365","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhad094","article-title":"The m6A reader MhYTP2 regulates the stability of its target mRNAs contributing to low nitrogen tolerance in apple (Malus domestica)","volume":"10","author":"Guo","year":"2023","journal-title":"Hortic. Res."},{"key":"10.1016\/j.tplants.2026.08.011_bb0370","doi-asserted-by":"crossref","DOI":"10.1080\/15592324.2023.2214760","article-title":"Methyltransferase-like (METTL) homologues participate in Nicotiana benthamiana antiviral responses","volume":"18","author":"Yue","year":"2023","journal-title":"Plant Signal. Behav."},{"key":"10.1016\/j.tplants.2026.08.011_bb0375","doi-asserted-by":"crossref","first-page":"1555","DOI":"10.1111\/mpp.13239","article-title":"AlkB RNA demethylase homologues and N6-methyladenosine are involved in Potyvirus infection","volume":"23","author":"Yue","year":"2022","journal-title":"Mol. Plant Pathol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0380","doi-asserted-by":"crossref","first-page":"6576","DOI":"10.1038\/s41467-022-34362-x","article-title":"N6-methyladenosine RNA modification promotes viral genomic RNA stability and infection","volume":"13","author":"Zhang","year":"2022","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2026.08.011_bb0385","doi-asserted-by":"crossref","first-page":"10755","DOI":"10.1073\/pnas.1703139114","article-title":"Arabidopsis m6A demethylase activity modulates viral infection of a plant virus and the m6A abundance in its genomic RNAs","volume":"114","author":"Martinez-Perez","year":"2017","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.tplants.2026.08.011_bb0390","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1007\/978-1-4939-6807-7_6","article-title":"Detection and quantification of N6-methyladenosine in messenger RNA by TLC","volume":"1562","author":"Bodi","year":"2017","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0395","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1007\/978-1-4939-8808-2_20","article-title":"Dot blot analysis for measuring global N6-methyladenosine modification of RNA","volume":"1870","author":"Nagarajan","year":"2019","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0400","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1042\/EBC20200039","article-title":"Detection methods of epitranscriptomic mark N6-methyladenosine","volume":"64","author":"Wang","year":"2020","journal-title":"Essays Biochem."},{"key":"10.1016\/j.tplants.2026.08.011_bb0405","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1038\/nature11112","article-title":"Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq","volume":"485","author":"Dominissini","year":"2012","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2026.08.011_bb0410","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.1016\/j.cell.2012.05.003","article-title":"Comprehensive analysis of mRNA methylation reveals enrichment in 3\u2032 UTRs and near stop codons","volume":"149","author":"Meyer","year":"2012","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0415","doi-asserted-by":"crossref","first-page":"2037","DOI":"10.1101\/gad.269415.115","article-title":"A majority of m6A residues are in the last exons, allowing the potential for 3\u2032 UTR regulation","volume":"29","author":"Ke","year":"2015","journal-title":"Genes Dev."},{"key":"10.1016\/j.tplants.2026.08.011_bb0420","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1038\/nmeth.3453","article-title":"Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome","volume":"12","author":"Linder","year":"2015","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0425","doi-asserted-by":"crossref","first-page":"1060","DOI":"10.1038\/s41592-021-01242-z","article-title":"Multiplexed profiling facilitates robust m6A quantification at site, gene and sample resolution","volume":"18","author":"Dierks","year":"2021","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0430","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1186\/s13059-020-02241-7","article-title":"Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing","volume":"22","author":"Gao","year":"2021","journal-title":"Genome Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0435","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1038\/s41587-022-01487-9","article-title":"Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI","volume":"41","author":"Liu","year":"2023","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0440","doi-asserted-by":"crossref","first-page":"1210","DOI":"10.1038\/s41587-022-01243-z","article-title":"m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome","volume":"40","author":"Hu","year":"2022","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0445","doi-asserted-by":"crossref","first-page":"1042","DOI":"10.1038\/s41557-025-01801-3","article-title":"Small-molecule-catalysed deamination enables transcriptome-wide profiling of N6-methyladenosine in RNA","volume":"17","author":"Wang","year":"2025","journal-title":"Nat. Chem."},{"key":"10.1016\/j.tplants.2026.08.011_bb0450","doi-asserted-by":"crossref","first-page":"7198","DOI":"10.1038\/s41467-021-27393-3","article-title":"RNA modifications detection by comparative Nanopore direct RNA sequencing","volume":"12","author":"Leger","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2026.08.011_bb0455","doi-asserted-by":"crossref","first-page":"4079","DOI":"10.1038\/s41467-019-11713-9","article-title":"Accurate detection of m6A RNA modifications in native RNA sequences","volume":"10","author":"Liu","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2026.08.011_bb0460","doi-asserted-by":"crossref","first-page":"1226","DOI":"10.1038\/s41592-025-02680-9","article-title":"Mild and ultrafast GLORI enables absolute quantification of m6A methylome from low-input samples","volume":"22","author":"Sun","year":"2025","journal-title":"Nat. Methods"},{"key":"10.1016\/j.tplants.2026.08.011_bb0465","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1016\/j.cell.2019.06.013","article-title":"Deciphering the \u201cm6A code\u201d via antibody-independent quantitative profiling","volume":"178","author":"Garcia-campos","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.tplants.2026.08.011_bb0470","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.aax0250","article-title":"Single-base mapping of m6A by an antibody-independent method","volume":"5","author":"Zhang","year":"2019","journal-title":"Sci. Adv."},{"key":"10.1016\/j.tplants.2026.08.011_bb0475","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1038\/s41589-020-0525-x","article-title":"Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine","volume":"16","author":"Wang","year":"2020","journal-title":"Nat. Chem. Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0480","doi-asserted-by":"crossref","first-page":"993","DOI":"10.1038\/s41587-022-01587-6","article-title":"Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination","volume":"41","author":"Xiao","year":"2023","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0485","doi-asserted-by":"crossref","first-page":"3414","DOI":"10.1038\/s41467-019-11232-7","article-title":"m6A modification of a 3\u2032 UTR site reduces RME1 mRNA levels to promote meiosis","volume":"10","author":"Bushkin","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.tplants.2026.08.011_bb0490","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1038\/s41586-019-1711-4","article-title":"Search-and-replace genome editing without double-strand breaks or donor DNA","volume":"576","author":"Anzalone","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.tplants.2026.08.011_bb0495","doi-asserted-by":"crossref","first-page":"582","DOI":"10.1038\/s41587-020-0455-x","article-title":"Prime genome editing in rice and wheat","volume":"38","author":"Lin","year":"2020","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0500","doi-asserted-by":"crossref","first-page":"1431","DOI":"10.1038\/s41587-020-0572-6","article-title":"Programmable m6A modification of cellular RNAs with a Cas13-directed methyltransferase","volume":"38","author":"Wilson","year":"2020","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0505","doi-asserted-by":"crossref","first-page":"1867","DOI":"10.1111\/pbi.14307","article-title":"Programmable RNA N6-methyladenosine editing with CRISPR\/dCas13a in plants","volume":"22","author":"Shi","year":"2024","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.tplants.2026.08.011_bb0510","article-title":"CRISPR\/dCas13(Rx) derived RNA N6-methyladenosine (m6A) dynamic modification in plant","volume":"11","author":"Yu","year":"2024","journal-title":"Adv. Sci. (Weinh.)"},{"key":"10.1016\/j.tplants.2026.08.011_bb0515","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.plantsci.2017.05.002","article-title":"Functions of two Malus hupehensis (Pamp.) Rehd. YTPs (MhYTP1 and MhYTP2) in biotic- and abiotic-stress responses","volume":"261","author":"Wang","year":"2017","journal-title":"Plant Sci."},{"key":"10.1016\/j.tplants.2026.08.011_bb0520","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1016\/j.envexpbot.2018.10.018","article-title":"Overexpression of MhYTP2 enhances apple water-use efficiency by activating ABA and ethylene signaling","volume":"157","author":"Liu","year":"2019","journal-title":"Environ. Exp. Bot."},{"key":"10.1016\/j.tplants.2026.08.011_bb0525","doi-asserted-by":"crossref","first-page":"1369","DOI":"10.1111\/jipb.13468","article-title":"Development of an efficient expression system with large cargo capacity for interrogation of gene function in bamboo based on bamboo mosaic virus","volume":"65","author":"Jin","year":"2023","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0530","doi-asserted-by":"crossref","first-page":"1810","DOI":"10.1111\/nph.20386","article-title":"Bamboo mosaic virus-mediated transgene-free genome editing in bamboo","volume":"245","author":"Wu","year":"2025","journal-title":"New Phytol."},{"key":"10.1016\/j.tplants.2026.08.011_bb0535","doi-asserted-by":"crossref","first-page":"2220","DOI":"10.1111\/pbi.70474","article-title":"BaMV-vectored compact AsCas12f1-HKRA enables transgene-free genome editing in Moso bamboo (Phyllostachys edulis)","volume":"24","author":"Wu","year":"2026","journal-title":"Plant Biotechnol. J."}],"container-title":["Trends in Plant Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S136013852600275X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S136013852600275X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T20:17:40Z","timestamp":1789589860000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S136013852600275X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":107,"alternative-id":["S136013852600275X"],"URL":"https:\/\/doi.org\/10.1016\/j.tplants.2026.08.011","relation":{},"ISSN":["1360-1385"],"issn-type":[{"value":"1360-1385","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Advances of N6-methyladenosine RNA methylation in tree species","name":"articletitle","label":"Article Title"},{"value":"Trends in Plant Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.tplants.2026.08.011","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}]}}