{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,6]],"date-time":"2026-02-06T08:43:44Z","timestamp":1770367424822,"version":"3.49.0"},"reference-count":35,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["The Veterinary Journal"],"published-print":{"date-parts":[[2026,2]]},"DOI":"10.1016\/j.tvjl.2025.106540","type":"journal-article","created":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T07:52:35Z","timestamp":1766130755000},"page":"106540","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Genomic characteristics of multidrug-resistant Streptococcus pluranimalium isolated from a cow with mastitis in Xinjiang, China"],"prefix":"10.1016","volume":"315","author":[{"given":"Zhenghao","family":"Jie","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luyu","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wei","family":"Jia","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhenlin","family":"Liao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qin","family":"Dong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-2287-2132","authenticated-orcid":false,"given":"Yuhui","family":"Tian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.tvjl.2025.106540_bib1","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1186\/1471-2164-12-402","article-title":"BLAST ring image generator (BRIG): simple prokaryote genome comparisons","volume":"12","author":"Alikhan","year":"2011","journal-title":"BMC Genomics"},{"issue":"7","key":"10.1016\/j.tvjl.2025.106540_bib2","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1093\/bioinformatics\/btv688","article-title":"hybridSPAdes: an algorithm for hybrid assembly of short and long reads","volume":"32","author":"Antipov","year":"2016","journal-title":"Bioinformatics"},{"issue":"12","key":"10.1016\/j.tvjl.2025.106540_bib3","doi-asserted-by":"crossref","first-page":"1242","DOI":"10.1016\/j.ijscr.2014.11.029","article-title":"Streptococcus pluranimalium: A novel human pathogen?","volume":"5","author":"Aryasinghe","year":"2014","journal-title":"International Journal of Surgery Case Reports"},{"issue":"W1","key":"10.1016\/j.tvjl.2025.106540_bib4","doi-asserted-by":"crossref","first-page":"W30","DOI":"10.1093\/nar\/gkx343","article-title":"IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets","volume":"45","author":"Bertelli","year":"2017","journal-title":"Nucleic Aci Research"},{"issue":"2","key":"10.1016\/j.tvjl.2025.106540_bib5","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1637\/11765-103117-Reg.1","article-title":"Streptococcosis in commercial and noncommercial avian species in California: 95 cases (2000-2017)","volume":"62","author":"Crispo","year":"2018","journal-title":"Avian Diseases"},{"key":"10.1016\/j.tvjl.2025.106540_bib6","doi-asserted-by":"crossref","DOI":"10.1016\/j.vetmic.2025.110678","article-title":"Susceptibility of mastitis-causing pathogens (Escherichia coli and Staphylococcus aureus) to disinfectants used as teat dipping","volume":"309","author":"Damasceno","year":"2025","journal-title":"Veterinary Microbiology"},{"key":"10.1016\/j.tvjl.2025.106540_bib7","doi-asserted-by":"crossref","DOI":"10.1016\/j.cimid.2022.101802","article-title":"Bovine mastitis in northeastern Brazil: occurrence of emergent bacteria and their phenotypic and genotypic profile of antimicrobial resistance","volume":"85","author":"de Oliveira","year":"2022","journal-title":"Comparative Immunology Microbiology and Infectious Diseases"},{"key":"10.1016\/j.tvjl.2025.106540_bib8","first-page":"1221","article-title":"Streptococcus pluranimalium sp. nov., from cattle and other animals","volume":"49","author":"Devriese","year":"1999","journal-title":"International Journal of Systematic Bacteriology"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib9","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1186\/s13059-015-0721-2","article-title":"OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy","volume":"16","author":"Emms","year":"2015","journal-title":"Genome Biology"},{"key":"10.1016\/j.tvjl.2025.106540_bib10","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1016\/j.plasmid.2018.06.002","article-title":"Mobile lincosamide resistance genes in Staphylococci","volume":"99","author":"Fe\u00dfler","year":"2018","journal-title":"Plasmid"},{"issue":"5","key":"10.1016\/j.tvjl.2025.106540_bib11","doi-asserted-by":"crossref","first-page":"956","DOI":"10.1177\/10406387211023465","article-title":"Streptococcus pluranimalium meningoencephalitis in a horse","volume":"33","author":"Fu","year":"2021","journal-title":"Journal of Veterinary Diagnostic Investigation"},{"issue":"10","key":"10.1016\/j.tvjl.2025.106540_bib12","doi-asserted-by":"crossref","first-page":"1858","DOI":"10.1002\/ccr3.2374","article-title":"The first report of Streptococcus pluranimalium infection from Iran: a case report and literature review","volume":"7","author":"Ghazvini","year":"2019","journal-title":"Clinical Case Reports"},{"key":"10.1016\/j.tvjl.2025.106540_bib13","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: prokaryotic gene recognition and translation initiation site identification","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib14","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-025-25008-1","article-title":"Host-specificity and therapeutic potential of novel Escherichia coli-targeting bacteriophages for bovine mastitis control","volume":"15","author":"Jacob","year":"2025","journal-title":"Scientific Reports"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib15","doi-asserted-by":"crossref","first-page":"5114","DOI":"10.1038\/s41467-018-07641-9","article-title":"High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries","volume":"9","author":"Jain","year":"2018","journal-title":"Nature Communications"},{"key":"10.1016\/j.tvjl.2025.106540_bib16","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2025.1654546","article-title":"Population structure, resistome, and virulome of Staphylococcus chromogenes strains from milk of subclinical bovine mastitis in South Africa","volume":"15","author":"Khasapane","year":"2025","journal-title":"Frontiers in Cellular and Infection Microbiology"},{"issue":"3","key":"10.1016\/j.tvjl.2025.106540_bib17","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1128\/AAC.28.3.421","article-title":"Plasmid-mediated resistance to lincomycin by inactivation in Staphylococcus haemolyticus","volume":"28","author":"Leclercq","year":"1985","journal-title":"Antimicrobial Agents and Chemotherapy"},{"issue":"6","key":"10.1016\/j.tvjl.2025.106540_bib18","doi-asserted-by":"crossref","first-page":"3483","DOI":"10.1021\/acs.jafc.4c10238","article-title":"l-glutamic acid alleviates mastitis in dairy cows by targeting the Sirt5\/Nrf2\/Prdx1 signaling axis and mitochondrial function","volume":"73","author":"Liu","year":"2025","journal-title":"Journal of Agricultural and Food Chemistry"},{"key":"10.1016\/j.tvjl.2025.106540_bib19","doi-asserted-by":"crossref","first-page":"123","DOI":"10.21775\/cimb.032.123","article-title":"Mobile genetic elements in Streptococci","author":"Lu","year":"2019","journal-title":"Current Issues in Molecular Biology 32"},{"key":"10.1016\/j.tvjl.2025.106540_bib20","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1016\/j.wneu.2018.04.099","article-title":"Streptococcus pluranimalium: emerging animal streptococcal species as causative agent of human brain abscess","volume":"115","author":"Maher","year":"2018","journal-title":"World Neurosurgery"},{"issue":"2","key":"10.1016\/j.tvjl.2025.106540_bib21","doi-asserted-by":"crossref","first-page":"1982","DOI":"10.3168\/jds.2020-19062","article-title":"Genetic analysis of pathogen-specific intramammary infections in dairy cows","volume":"104","author":"Narayana","year":"2021","journal-title":"Journal of Dairy Science"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib22","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Molecular Biology and Evolution"},{"issue":"22","key":"10.1016\/j.tvjl.2025.106540_bib23","doi-asserted-by":"crossref","first-page":"3691","DOI":"10.1093\/bioinformatics\/btv421","article-title":"Roary: rapid large-scale prokaryote pan genome analysis","volume":"31","author":"Page","year":"2015","journal-title":"Bioinformatics"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib24","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1186\/s12866-018-1327-0","article-title":"Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation","volume":"18","author":"Pan","year":"2018","journal-title":"BMC Microbiology"},{"issue":"4","key":"10.1016\/j.tvjl.2025.106540_bib25","doi-asserted-by":"crossref","first-page":"523","DOI":"10.2478\/jvetres-2020-0067","article-title":"Efficacy of natural formulations in bovine mastitis pathology: Alternative solution to antimicrobial treatment","volume":"64","author":"Pa\u0219ca","year":"2020","journal-title":"Journal of Veterinary Research"},{"issue":"5","key":"10.1016\/j.tvjl.2025.106540_bib26","first-page":"289","article-title":"Resistance patterns of bovine mastitis-associated Escherichia coli isolates to selected antimicrobial agents in Austria","volume":"53","author":"Piechl","year":"2025","journal-title":"Tierarztlich Praxis Ausgabe Giornale Grosstiere Nutztiere"},{"issue":"9","key":"10.1016\/j.tvjl.2025.106540_bib27","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.01623-23","article-title":"Overview of changes in the clinical and laboratory standards institute performance standards for antimicrobial susceptibility testing: M100 32nd and 33rd editions","volume":"63","author":"Schuetz","year":"2025","journal-title":"Journal of Clinical Microbiology"},{"issue":"12","key":"10.1016\/j.tvjl.2025.106540_bib28","doi-asserted-by":"crossref","first-page":"3882","DOI":"10.1093\/bioinformatics\/btaa250","article-title":"Phigaro: high-throughput prophage sequence annotation","volume":"36","author":"Starikova","year":"2020","journal-title":"Bioinformatics"},{"key":"10.1016\/j.tvjl.2025.106540_bib29","doi-asserted-by":"crossref","first-page":"2538","DOI":"10.3390\/ani13152538","article-title":"Mastitis in dairy cattle: on-farm diagnostics and future perspectives","volume":"13","author":"Tommasoni","year":"2023","journal-title":"Animals"},{"issue":"7","key":"10.1016\/j.tvjl.2025.106540_bib30","doi-asserted-by":"crossref","DOI":"10.1099\/mgen.0.001441","article-title":"Global analysis of the genomic diversity, antimicrobial resistance and potential vaccine candidates carried by the major global bovine pathogen Streptococcus uberis","volume":"11","author":"Turner","year":"2025","journal-title":"Microbial Genomics"},{"issue":"2","key":"10.1016\/j.tvjl.2025.106540_bib31","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1016\/j.tvjl.2011.09.013","article-title":"The innate immune response of the bovine mammary gland to bacterial infection","volume":"192","author":"Wellnitz","year":"2012","journal-title":"The Veterinary Journal"},{"issue":"W1","key":"10.1016\/j.tvjl.2025.106540_bib32","doi-asserted-by":"crossref","first-page":"W587","DOI":"10.1093\/nar\/gkad359","article-title":"Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees","volume":"51","author":"Xie","year":"2023","journal-title":"Nucleic Aci Research"},{"key":"10.1016\/j.tvjl.2025.106540_bib33","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.jgar.2023.09.007","article-title":"Whole genome sequence of Streptococcus pluranimalium SP21-2, a porcine strain harbouring optrA and lsa(E) with chromosomal location","volume":"35","author":"Xu","year":"2023","journal-title":"Journal of Global Antimicrobial Resistance"},{"issue":"1","key":"10.1016\/j.tvjl.2025.106540_bib34","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1186\/s13567-025-01567-z","article-title":"A novel pilus-associated gene cluster is implicated in Streptococcus agalactiae virulence","volume":"56","author":"Xu","year":"2025","journal-title":"Veterinary Research"},{"issue":"9","key":"10.1016\/j.tvjl.2025.106540_bib35","doi-asserted-by":"crossref","DOI":"10.1093\/omcr\/omaf156","article-title":"Multivalvular infective endocarditis due to Streptococcus pluranimalium in a young patient with bicuspid aortic valve","volume":"2025","author":"Z\u00fa\u00f1iga-Espinosa","year":"2025","journal-title":"Oxford Medical Case Reports"}],"container-title":["The Veterinary Journal"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1090023325002448?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1090023325002448?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,2,5]],"date-time":"2026-02-05T17:26:20Z","timestamp":1770312380000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1090023325002448"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,2]]},"references-count":35,"alternative-id":["S1090023325002448"],"URL":"https:\/\/doi.org\/10.1016\/j.tvjl.2025.106540","relation":{},"ISSN":["1090-0233"],"issn-type":[{"value":"1090-0233","type":"print"}],"subject":[],"published":{"date-parts":[[2026,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic characteristics of multidrug-resistant Streptococcus pluranimalium isolated from a cow with mastitis in Xinjiang, China","name":"articletitle","label":"Article Title"},{"value":"The Veterinary Journal","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.tvjl.2025.106540","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"106540"}}