{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,17]],"date-time":"2026-02-17T03:22:09Z","timestamp":1771298529824,"version":"3.50.1"},"reference-count":50,"publisher":"Elsevier BV","issue":"1-2","license":[{"start":{"date-parts":[[2012,11,1]],"date-time":"2012-11-01T00:00:00Z","timestamp":1351728000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Veterinary Microbiology"],"published-print":{"date-parts":[[2012,11]]},"DOI":"10.1016\/j.vetmic.2012.05.029","type":"journal-article","created":{"date-parts":[[2012,5,30]],"date-time":"2012-05-30T10:31:37Z","timestamp":1338373897000},"page":"197-206","source":"Crossref","is-referenced-by-count":22,"title":["Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages"],"prefix":"10.1016","volume":"160","author":[{"given":"Guanghui","family":"Wu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ralf","family":"Ehricht","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Muriel","family":"Mafura","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthew","family":"Stokes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Noel","family":"Smith","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Geoff C.","family":"Pritchard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin J.","family":"Woodward","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.vetmic.2012.05.029_bib0005","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1111\/j.1574-695X.2008.00388.x","article-title":"Uropathogenic Escherichia coli (UPEC) strains may carry virulence properties of diarrhoeagenic E. coli","volume":"52","author":"Abe","year":"2008","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0010","doi-asserted-by":"crossref","first-page":"2709","DOI":"10.1128\/JCM.00516-10","article-title":"Genetic diversity and virulence profiles of Escherichia coli isolates causing spontaneous bacterial peritonitis and bacteremia in patients with cirrhosis","volume":"48","author":"Bert","year":"2010","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0015","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1046\/j.1365-2958.1997.3871751.x","article-title":"EspP, a novel extracellular serine protease of enterohaemorrhagic Escherichia coli O157:H7 cleaves human coagulation factor V","volume":"24","author":"Brunder","year":"1997","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0020","doi-asserted-by":"crossref","first-page":"12879","DOI":"10.1073\/pnas.0603038103","article-title":"How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains","volume":"103","author":"Brzuszkiewicz","year":"2006","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0025","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1093\/jac\/dkp156","article-title":"Escherichia coli phylogenetic groups are associated with site of infection and level of antibiotic resistance in community-acquired bacteraemia: a 10 year population-based study in Denmark","volume":"64","author":"Bukh","year":"2010","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0030","doi-asserted-by":"crossref","first-page":"4555","DOI":"10.1128\/AEM.66.10.4555-4558.2000","article-title":"Rapid and simple determination of the Escherichia coli phylogenetic group","volume":"66","author":"Clermont","year":"2000","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0035","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1016\/j.meegid.2011.02.005","article-title":"Animal and human pathogenic Escherichia coli strains share common genetic backgrounds","volume":"11","author":"Clermont","year":"2011","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0040","doi-asserted-by":"crossref","first-page":"1375","DOI":"10.1128\/JCM.41.4.1375-1385.2003","article-title":"Presence and characterization of extraintestinal pathogenic Escherichia coli virulence genes in F165-positive E. coli strains isolated from diseased calves and pigs","volume":"41","author":"Dezfulian","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0045","doi-asserted-by":"crossref","first-page":"1251","DOI":"10.1534\/genetics.106.063305","article-title":"Inference of bacterial microevolution using multilocus sequence data","volume":"175","author":"Didelot","year":"2007","journal-title":"Genetics"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0050","doi-asserted-by":"crossref","first-page":"1085","DOI":"10.1093\/molbev\/msh118","article-title":"A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli","volume":"21","author":"Escobar-Paramo","year":"2004","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0055","doi-asserted-by":"crossref","first-page":"1518","DOI":"10.1128\/JB.186.5.1518-1530.2004","article-title":"eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data","volume":"186","author":"Feil","year":"2004","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0060","doi-asserted-by":"crossref","first-page":"1179","DOI":"10.1099\/mic.0.27809-0","article-title":"ibeA, a virulence factor of avian pathogenic Escherichia coli","volume":"151","author":"Germon","year":"2005","journal-title":"Microbiology"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0065","doi-asserted-by":"crossref","first-page":"5510","DOI":"10.1128\/AEM.00743-10","article-title":"Rapid microarray-based genotyping of enterohemorrhagic Escherichia coli serotype O156:H25\/H-\/Hnt isolates from cattle and clonal relationship analysis","volume":"76","author":"Geue","year":"2010","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0070","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1128\/JCM.41.1.218-226.2003","article-title":"Extended virulence genotype of pathogenic Escherichia coli isolates carrying the afa-8 operon: evidence of similarities between isolates from humans and animals with extraintestinal infections","volume":"41","author":"Girardeau","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0075","doi-asserted-by":"crossref","first-page":"2484","DOI":"10.1111\/j.1462-2920.2008.01669.x","article-title":"Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method","volume":"10","author":"Gordon","year":"2008","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0080","unstructured":"Gyles, C.L., 1994. Escherichia coli in domestic animals and humans."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0085","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1089\/fpd.2008.0176","article-title":"Molecular analysis of antimicrobial-susceptible and -resistant Escherichia coli from retail meats and human stool and clinical specimens in a rural community setting","volume":"6","author":"Hannah","year":"2009","journal-title":"Foodborne Pathog. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0095","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1007\/s101420100039","article-title":"A novel genetic island of meningitic Escherichia coli K1 containing the ibeA invasion gene (GimA): functional annotation and carbon-source-regulated invasion of human brain microvascular endothelial cells","volume":"1","author":"Huang","year":"2001","journal-title":"Funct. Integr. Genomics"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0100","doi-asserted-by":"crossref","first-page":"1071","DOI":"10.1086\/319290","article-title":"Further characterization of Escherichia coli brain microvascular endothelial cell invasion gene ibeA by deletion, complementation, and protein expression","volume":"183","author":"Huang","year":"2001","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0105","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1093\/molbev\/msj030","article-title":"Application of phylogenetic networks in evolutionary studies","volume":"23","author":"Huson","year":"2006","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0110","doi-asserted-by":"crossref","first-page":"536","DOI":"10.1136\/vr.d915","article-title":"Verocytotoxin-producing and attaching and effacing activity of Escherichia coli isolated from diseased farm livestock","volume":"168","author":"Hutchinson","year":"2011","journal-title":"Vet. Rec."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0115","doi-asserted-by":"crossref","first-page":"854","DOI":"10.1111\/j.1469-0691.2007.01775.x","article-title":"Host and bacterial determinants of initial severity and outcome of Escherichia coli sepsis","volume":"13","author":"Jaureguy","year":"2007","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0120","doi-asserted-by":"crossref","first-page":"560","DOI":"10.1186\/1471-2164-9-560","article-title":"Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains","volume":"9","author":"Jaureguy","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0125","doi-asserted-by":"crossref","first-page":"2311","DOI":"10.1128\/IAI.59.7.2311-2315.1991","article-title":"Association of carboxylesterase B electrophoretic pattern with presence and expression of urovirulence factor determinants and antimicrobial resistance among strains of Escherichia coli that cause urosepsis","volume":"59","author":"Johnson","year":"1991","journal-title":"Infect. Immun."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0130","doi-asserted-by":"crossref","first-page":"5363","DOI":"10.1128\/IAI.69.9.5363-5374.2001","article-title":"Ongoing horizontal and vertical transmission of virulence genes and papA alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia","volume":"69","author":"Johnson","year":"2001","journal-title":"Infect. Immun."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0135","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1093\/infdis\/169.1.119","article-title":"O K, and H antigens predict virulence factors, carboxylesterase B pattern, antimicrobial resistance, and host compromise among Escherichia coli strains causing urosepsis","volume":"169","author":"Johnson","year":"1994","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0140","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1086\/315217","article-title":"Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise","volume":"181","author":"Johnson","year":"2000","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0145","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1086\/319263","article-title":"Phylogenetic and pathotypic similarities between Escherichia coli isolates from urinary tract infections in dogs and extraintestinal infections in humans","volume":"183","author":"Johnson","year":"2001","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0150","doi-asserted-by":"crossref","first-page":"3228","DOI":"10.1128\/JB.01726-06","article-title":"The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes","volume":"189","author":"Johnson","year":"2007","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0155","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1089\/fpd.2009.0266","article-title":"Examination of the source and extended virulence genotypes of Escherichia coli contaminating retail poultry meat","volume":"6","author":"Johnson","year":"2009","journal-title":"Foodborne Pathog. Dis."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0160","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1111\/j.1442-2042.2006.01398.x","article-title":"Subtyping of uropathogenic Escherichia coli according to the pathogenicity island encoding uropathogenic-specific protein: comparison with phylogenetic groups","volume":"13","author":"Kanamaru","year":"2006","journal-title":"Int. J. Urol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0165","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1128\/JB.01472-06","article-title":"Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling","volume":"189","author":"Lacher","year":"2007","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0170","doi-asserted-by":"crossref","first-page":"1685","DOI":"10.1093\/oxfordjournals.molbev.a025895","article-title":"Escherichia coli molecular phylogeny using the incongruence length difference test","volume":"15","author":"Lecointre","year":"1998","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0175","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/j.femsle.2005.08.028","article-title":"Escherichia coli mediated urinary tract infections: are there distinct uropathogenic E. coli (UPEC) pathotypes?","volume":"252","author":"Marrs","year":"2005","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0180","doi-asserted-by":"crossref","unstructured":"Monecke, S., Mariani-Kurkdjian, P., Bingen, E., Weill, F.X., Bali\u00e8re, C., Slickers, P., Ehricht, R. Presence of Enterohemorrhagic Escherichia coli ST678\/O104:H4 in France prior to 2011. Appl. Environ. Microbiol., in press.","DOI":"10.1128\/AEM.06524-11"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0185","doi-asserted-by":"crossref","first-page":"3366","DOI":"10.1128\/JCM.00037-07","article-title":"Extraintestinal pathogenic Escherichia coli strains of avian and human origin: link between phylogenetic relationships and common virulence patterns","volume":"45","author":"Moulin-Schouleur","year":"2007","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0190","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1128\/CMR.11.1.142","article-title":"Diarrheagenic Escherichia coli","volume":"11","author":"Nataro","year":"1998","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0195","doi-asserted-by":"crossref","first-page":"e14093","DOI":"10.1371\/journal.pone.0014093","article-title":"Multi-locus sequence typing of enteroaggregative Escherichia coli isolates from Nigerian children uncovers multiple lineages","volume":"5","author":"Okeke","year":"2010","journal-title":"PLoS ONE"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0200","doi-asserted-by":"crossref","first-page":"64","DOI":"10.1038\/35017546","article-title":"Parallel evolution of virulence in pathogenic Escherichia coli","volume":"406","author":"Reid","year":"2000","journal-title":"Nature"},{"key":"10.1016\/j.vetmic.2012.05.029_bib0205","doi-asserted-by":"crossref","first-page":"1553","DOI":"10.1128\/AEM.01542-06","article-title":"Autotransporter-encoding sequences are phylogenetically distributed among Escherichia coli clinical isolates and reference strains","volume":"73","author":"Restieri","year":"2007","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0210","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1016\/S1286-4579(03)00049-2","article-title":"Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem","volume":"5","author":"Russo","year":"2003","journal-title":"Microbes Infect."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0215","doi-asserted-by":"crossref","first-page":"5860","DOI":"10.1128\/JCM.43.12.5860-5864.2005","article-title":"Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing","volume":"43","author":"Tartof","year":"2005","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0220","doi-asserted-by":"crossref","first-page":"e1000344","DOI":"10.1371\/journal.pgen.1000344","article-title":"Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths","volume":"5","author":"Touchon","year":"2009","journal-title":"PLoS Genet."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0225","doi-asserted-by":"crossref","first-page":"504","DOI":"10.1093\/jac\/dkm517","article-title":"Imported chicken meat as a potential source of quinolone-resistant Escherichia coli producing extended-spectrum beta-lactamases in the UK","volume":"61","author":"Warren","year":"2008","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0230","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1111\/j.1365-2958.2006.05172.x","article-title":"Sex and virulence in Escherichia coli: an evolutionary perspective","volume":"60","author":"Wirth","year":"2006","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0235","doi-asserted-by":"crossref","first-page":"228","DOI":"10.1111\/j.1758-2229.2009.00095.x","article-title":"Epidemic multidrug-resistant (MDR-AmpC) Salmonella enterica serovar Newport strains contain three phage regions and a MDR resistance plasmid","volume":"2","author":"Wu","year":"2010","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0240","doi-asserted-by":"crossref","first-page":"845","DOI":"10.1128\/IAI.00956-07","article-title":"Genetic diversity among Escherichia coli O157:H7 isolates and identification of genes linked to human infections","volume":"76","author":"Wu","year":"2008","journal-title":"Infect. Immun."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0245","doi-asserted-by":"crossref","first-page":"691","DOI":"10.1136\/vr.b4791","article-title":"Genes associated with Escherichia coli isolates from calves with diarrhoea and\/or septicaemia","volume":"166","author":"Wu","year":"2010","journal-title":"Vet. Rec."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0250","doi-asserted-by":"crossref","first-page":"3951","DOI":"10.1128\/JCM.40.11.3951-3955.2002","article-title":"Both urinary and rectal Escherichia coli isolates are dominated by strains of phylogenetic group B2","volume":"40","author":"Zhang","year":"2002","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2012.05.029_bib0255","doi-asserted-by":"crossref","first-page":"1634","DOI":"10.1099\/mic.0.024869-0","article-title":"Comparison of virulence factors and expression of specific genes between uropathogenic Escherichia coli and avian pathogenic E. coli in a murine urinary tract infection model and a chicken challenge model","volume":"155","author":"Zhao","year":"2009","journal-title":"Microbiology"}],"container-title":["Veterinary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113512003380?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113512003380?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,7,8]],"date-time":"2020-07-08T06:55:00Z","timestamp":1594191300000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0378113512003380"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11]]},"references-count":50,"journal-issue":{"issue":"1-2","published-print":{"date-parts":[[2012,11]]}},"alternative-id":["S0378113512003380"],"URL":"https:\/\/doi.org\/10.1016\/j.vetmic.2012.05.029","relation":{},"ISSN":["0378-1135"],"issn-type":[{"value":"0378-1135","type":"print"}],"subject":[],"published":{"date-parts":[[2012,11]]}}}