{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T04:06:57Z","timestamp":1784606817912,"version":"3.55.0"},"reference-count":38,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2019,4,1]],"date-time":"2019-04-01T00:00:00Z","timestamp":1554076800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"funder":[{"name":"Australian Research CouncilAustralian Research Council (ARC)","award":["LP140100279"],"award-info":[{"award-number":["LP140100279"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Veterinary Microbiology"],"published-print":{"date-parts":[[2019,4]]},"DOI":"10.1016\/j.vetmic.2019.02.020","type":"journal-article","created":{"date-parts":[[2019,2,12]],"date-time":"2019-02-12T12:41:21Z","timestamp":1549975281000},"page":"264-270","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":26,"special_numbering":"C","title":["Genetic differences in Chlamydia pecorum between neighbouring sub-populations of koalas (Phascolarctos cinereus)"],"prefix":"10.1016","volume":"231","author":[{"given":"Cristina M.","family":"Fernandez","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura J.","family":"Schmertmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Damien P.","family":"Higgins","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrea","family":"Casteriano","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laszlo","family":"Irinyi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Valentina S.A.","family":"Mella","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mathew S.","family":"Crowther","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wieland","family":"Meyer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark B.","family":"Krockenberger","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.vetmic.2019.02.020_bib0005","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2164-15-667","article-title":"Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum","volume":"15","author":"Bachmann","year":"2014","journal-title":"BMC Genomics"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0010","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1111\/j.1751-0813.1984.tb07182.x","article-title":"Isolation of Chlamydia psiltaci from koalas (Phascolarctos cinereus)","volume":"61","author":"Brown","year":"1984","journal-title":"Aust. Vet. J."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0015","doi-asserted-by":"crossref","first-page":"497","DOI":"10.7589\/0090-3558-17.4.497","article-title":"Keratoconjunctivitis of the koala, Phascolarctos cinereus, caused by Chlamydia psittaci","volume":"17","author":"Cockram","year":"1981","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0020","doi-asserted-by":"crossref","first-page":"336","DOI":"10.1111\/j.1600-0587.2013.00413.x","article-title":"Climate\u2010mediated habitat selection in an arboreal folivore","volume":"37","author":"Crowther","year":"2014","journal-title":"Ecography"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0025","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1016\/j.mcp.2005.09.003","article-title":"Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies","volume":"20","author":"Ehricht","year":"2006","journal-title":"Mol. Cell. Probes"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0030","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1016\/j.tig.2013.05.010","article-title":"Human housekeeping genes, revisited","volume":"29","author":"Eisenberg","year":"2013","journal-title":"Trends Genet."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0035","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1038\/nrmicro904","article-title":"Small change: keeping pace with microevolution","volume":"2","author":"Feil","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0040","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1111\/j.1365-2885.2011.01307.x","article-title":"Plasma concentrations of chloramphenicol after subcutaneous administration to koalas (Phascolarctos cinereus) with chlamydiosis","volume":"35","author":"Govendir","year":"2012","journal-title":"J. Vet. Pharmacol. Ther."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0045","series-title":"Studies Into the Diagnosis, Treatment and Management of Chlamydiosis in Koalas. PhD Thesis","author":"Griffith","year":"2010"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0050","doi-asserted-by":"crossref","first-page":"18","DOI":"10.7589\/2012-05-135","article-title":"A retrospective study of admission trends of koalas to a rehabilitation facility over 30 years","volume":"49","author":"Griffith","year":"2013","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0055","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1016\/j.vetmic.2011.11.005","article-title":"Within-population diversity of koala Chlamydophila pecorum at ompA VD1-VD3 and the ORF663 hypothetical gene","volume":"156","author":"Higgins","year":"2012","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0060","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1093\/sysbio\/42.2.182","article-title":"An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis","volume":"42","author":"Hillis","year":"1993","journal-title":"Syst. Biol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0065","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/S0723-2020(97)80065-3","article-title":"Outer membrane protein a gene sequencing demonstrates the polyphyletic nature of koala Chlamydia pecorum isolates","volume":"20","author":"Jackson","year":"1997","journal-title":"Syst. Appl. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0070","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1016\/S0378-1135(98)00302-2","article-title":"Epizootiology of Chlamydia infections in two free-range koala populations","volume":"65","author":"Jackson","year":"1999","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0075","doi-asserted-by":"crossref","first-page":"2625","DOI":"10.1128\/JCM.00992-13","article-title":"Multilocus sequence analysis provides insights into molecular epidemiology of Chlamydia pecorum infections in Australian sheep, cattle, and koalas","volume":"51","author":"Jelocnik","year":"2013","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0080","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1016\/j.vetmic.2014.08.018","article-title":"Evaluation of the relationship between Chlamydia pecorum sequence types and disease using a species-specific multi-locus sequence typing scheme (MLST)","volume":"174","author":"Jelocnik","year":"2014","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0085","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2105-11-595","article-title":"BIGSdb: scalable analysis of bacterial genome variation at the population level","volume":"11","author":"Jolley","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0090","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1016\/j.vetmic.2013.08.009","article-title":"Genetic diversity of Chlamydia pecorum strains in wild koala locations across Australia and the implications for a recombinant C. pecorum major outer membrane protein based vaccine","volume":"167","author":"Kollipara","year":"2013","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0095","doi-asserted-by":"crossref","first-page":"1870","DOI":"10.1093\/molbev\/msw054","article-title":"MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets","volume":"33","author":"Kumar","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0100","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1099\/jmm.0.000241","article-title":"Identification of unusual Chlamydia pecorum genotypes in Victorian koalas (Phascolarctos cinereus) and clinical variables associated with infection","volume":"65","author":"Legione","year":"2016","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0105","first-page":"150","article-title":"Koalas and climate change: a case study on the Liverpool Plains, north-west New South Wales","author":"Lunney","year":"2012","journal-title":"Wildlife Clim. Change"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0110","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1146\/annurev.micro.59.030804.121325","article-title":"Multilocus sequence typing of bacteria","volume":"60","author":"Maiden","year":"2006","journal-title":"Annu. Rev. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0115","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1016\/j.vetmic.2006.11.022","article-title":"Use of quantitative real-time PCR to monitor the shedding and treatment of chlamydiae in the koala (Phascolarctos cinereus)","volume":"120","author":"Markey","year":"2007","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0120","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2180-11-77","article-title":"Novel molecular markers of Chlamydia pecorum genetic diversity in the koala (Phascolarctos cinereus)","volume":"11","author":"Marsh","year":"2011","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0125","doi-asserted-by":"crossref","first-page":"3140","DOI":"10.1073\/pnas.95.6.3140","article-title":"Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms","volume":"95","author":"Martin","year":"1998","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0130","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1016\/j.dci.2014.05.015","article-title":"Interleukin 17A is an immune marker for chlamydial disease severity and pathogenesis in the koala (Phascolarctos cinereus)","volume":"46","author":"Mathew","year":"2014","journal-title":"Dev. Comp. Immunol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0135","article-title":"Assessing the significance of endemic disease in conservation\u2014koalas, chlamydia, and koala retrovirus as a case study","volume":"11","author":"McCallum","year":"2017","journal-title":"Conserv. Lett."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0140","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1136\/vr.115.25-26.655","article-title":"Chlamydia infection and infertility in the female koala (Phascolarctos cinereus)","volume":"115","author":"McColl","year":"1984","journal-title":"Vet. Rec."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0145","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0190114","article-title":"Epidemiology of chlamydial infection and disease in a free-ranging koala (Phascolarctos cinereus) population","volume":"12","author":"Nyari","year":"2017","journal-title":"PLoS One"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0150","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2180-8-42","article-title":"Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis","volume":"8","author":"Pannekoek","year":"2008","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0155","doi-asserted-by":"crossref","first-page":"309","DOI":"10.7589\/2014-07-176","article-title":"The prevalence and clinical significance of Chlamydia infection in island and mainland populations of Victorian koalas (Phascolarctos cinereus)","volume":"51","author":"Patterson","year":"2015","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0160","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0031538","article-title":"MLVA subtyping of genovar E Chlamydia trachomatis individualizes the Swedish variant and anorectal isolates from men who have sex with men","volume":"7","author":"Peuchant","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.vetmic.2019.02.020_bib0165","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1016\/j.vetmic.2013.02.026","article-title":"Recent advances in understanding the biology, epidemiology and control of chlamydial infections in koalas","volume":"165","author":"Polkinghorne","year":"2013","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0170","doi-asserted-by":"crossref","first-page":"1081","DOI":"10.1016\/j.biocon.2010.12.027","article-title":"Using integrated population modelling to quantify the implications of multiple threatening processes for a rapidly declining population","volume":"144","author":"Rhodes","year":"2011","journal-title":"Biol. Cons."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0175","doi-asserted-by":"crossref","first-page":"863","DOI":"10.7589\/2017-07-183","article-title":"Prevalence of Chlamydia pecorum in juvenile koalas (Phascolarctos cinereus) and evidence for protection from infection via maternal immunization","volume":"54","author":"Russell","year":"2018","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0180","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1111\/j.1751-0813.2011.00827.x","article-title":"Using quantitative polymerase chain reaction to correlate Chlamydia pecorum infectious load with ocular, urinary and reproductive tract disease in the koala (Phascolarctos cinereus)","volume":"89","author":"Wan","year":"2011","journal-title":"Aust. Vet. J."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0185","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-017-00137-4","article-title":"Infection with koala retrovirus subgroup B (KoRV-B), but not KoRV-A, is associated with chlamydial disease in free-ranging koalas (Phascolarctos cinereus)","volume":"7","author":"Waugh","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.vetmic.2019.02.020_bib0190","doi-asserted-by":"crossref","first-page":"282","DOI":"10.7589\/0090-3558-24.2.282","article-title":"Aspects of the epidemiology of Chlamydia psittaci infection in a population of koalas (Phascolarctos cinereus) in southeastern Queensland, Australia","volume":"24","author":"Weigler","year":"1988","journal-title":"J. Wildl. Dis."}],"container-title":["Veterinary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113518312252?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113518312252?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,4,4]],"date-time":"2019-04-04T20:12:04Z","timestamp":1554408724000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0378113518312252"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,4]]},"references-count":38,"alternative-id":["S0378113518312252"],"URL":"https:\/\/doi.org\/10.1016\/j.vetmic.2019.02.020","relation":{},"ISSN":["0378-1135"],"issn-type":[{"value":"0378-1135","type":"print"}],"subject":[],"published":{"date-parts":[[2019,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genetic differences in Chlamydia pecorum between neighbouring sub-populations of koalas (Phascolarctos cinereus)","name":"articletitle","label":"Article Title"},{"value":"Veterinary Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.vetmic.2019.02.020","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 Published by Elsevier B.V.","name":"copyright","label":"Copyright"}]}}