{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,28]],"date-time":"2026-08-28T16:27:05Z","timestamp":1787934425560,"version":"build-2784847793"},"reference-count":39,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Veterinary Microbiology"],"published-print":{"date-parts":[[2024,3]]},"DOI":"10.1016\/j.vetmic.2024.109993","type":"journal-article","created":{"date-parts":[[2024,1,21]],"date-time":"2024-01-21T01:13:56Z","timestamp":1705799636000},"page":"109993","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Prevalence and genetic characteristics of Salmonella enterica serovar Meleagridis from animals and humans"],"prefix":"10.1016","volume":"290","author":[{"given":"Kai","family":"Zhang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhenyu","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pengyu","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haiyan","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xinan","family":"Jiao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiuchun","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"5","key":"10.1016\/j.vetmic.2024.109993_bib1","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol."},{"key":"10.1016\/j.vetmic.2024.109993_bib2","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1146\/annurev-food-022814-015729","article-title":"CRISPR-based typing and next-generation tracking technologies","volume":"7","author":"Barrangou","year":"2016","journal-title":"Annu. Rev. Food Sci. Technol."},{"issue":"2","key":"10.1016\/j.vetmic.2024.109993_bib3","doi-asserted-by":"crossref","first-page":"292","DOI":"10.3390\/microorganisms10020292","article-title":"Correlation between phenotypic and in silico detection of antimicrobial resistance in Salmonella enterica in Canada using staramr","volume":"10","author":"Bharat","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.vetmic.2024.109993_bib4","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1007\/978-1-4939-9877-7_20","article-title":"PlasmidFinder and In Silico pMLST: identification and typing of plasmid replicons in Whole-Genome Sequencing (WGS)","volume":"2075","author":"Carattoli","year":"2020","journal-title":"Methods Mol. Biol. (Clifton, N. J. )"},{"key":"10.1016\/j.vetmic.2024.109993_bib5","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.763669","article-title":"Monitoring the microevolution of Salmonella enterica in healthy dairy cattle populations at the individual farm level using whole-genome sequencing","volume":"12","author":"Carroll","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.vetmic.2024.109993_bib6","doi-asserted-by":"crossref","first-page":"D325","DOI":"10.1093\/nar\/gki008","article-title":"VFDB: a reference database for bacterial virulence factors","volume":"33","author":"Chen","year":"2005","journal-title":"Nucleic Acids Res."},{"issue":"40","key":"10.1016\/j.vetmic.2024.109993_bib7","doi-asserted-by":"crossref","first-page":"1260","DOI":"10.15585\/mmwr.mm7140a2","article-title":"Preliminary incidence and trends of infections caused by pathogens transmitted commonly through food - foodborne diseases active surveillance network, 10 U.S. Sites, 2016-2021","volume":"71","author":"Collins","year":"2022","journal-title":"Mmwr. Morb. Mortal. Wkly. Rep."},{"key":"10.1016\/j.vetmic.2024.109993_bib8","doi-asserted-by":"crossref","DOI":"10.3389\/fvets.2022.816279","article-title":"Analysis of antimicrobial resistance in non-typhoidal Salmonella collected from pork retail outlets and slaughterhouses in Vietnam using whole genome sequencing","volume":"9","author":"Holohan","year":"2022","journal-title":"Front. Vet. Sci."},{"issue":"5962","key":"10.1016\/j.vetmic.2024.109993_bib9","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1126\/science.1179555","article-title":"CRISPR\/Cas, the immune system of bacteria and archaea","volume":"327","author":"Horvath","year":"2010","journal-title":"Science"},{"key":"10.1016\/j.vetmic.2024.109993_bib10","doi-asserted-by":"crossref","first-page":"526","DOI":"10.1016\/j.resmic.2014.07.004","article-title":"Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme","volume":"165","author":"Issenhuth-Jeanjean","year":"2014","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.vetmic.2024.109993_bib11","doi-asserted-by":"crossref","first-page":"124","DOI":"10.12688\/wellcomeopenres.14826.1","article-title":"Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications","volume":"3","author":"Jolley","year":"2018","journal-title":"Wellcome Open Res."},{"issue":"14","key":"10.1016\/j.vetmic.2024.109993_bib12","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2021.26.14.2000131","article-title":"A cross-border outbreak of Salmonella Bareilly cases confirmed by whole genome sequencing, Czech Republic and Slovakia, 2017 to 2018","volume":"26","author":"Labska","year":"2021","journal-title":"Eur. Surveill."},{"issue":"4","key":"10.1016\/j.vetmic.2024.109993_bib13","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1128\/JCM.06094-11","article-title":"Multilocus sequence typing of total-genome-sequenced bacteria","volume":"50","author":"Larsen","year":"2012","journal-title":"J. Clin. Microbiol."},{"issue":"13","key":"10.1016\/j.vetmic.2024.109993_bib14","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.02829-17","article-title":"Serotype diversity and antimicrobial resistance among Salmonella enterica isolates from patients at an Equine Referral Hospital","volume":"84","author":"Leon","year":"2018","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.vetmic.2024.109993_bib15","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1007\/978-1-0716-0791-6_6","article-title":"CRISPR typing of Salmonella isolates from different resources","volume":"2182","author":"Li","year":"2021","journal-title":"Methods Mol. Biol. (Clifton, N. J. )"},{"key":"10.1016\/j.vetmic.2024.109993_bib16","doi-asserted-by":"crossref","DOI":"10.1016\/j.fm.2022.103977","article-title":"The acid tolerance responses of the Salmonella strains isolated from beef processing plants","volume":"104","author":"Liu","year":"2022","journal-title":"Food Microbiol."},{"issue":"11","key":"10.1016\/j.vetmic.2024.109993_bib17","doi-asserted-by":"crossref","first-page":"667","DOI":"10.1089\/fpd.2016.2264","article-title":"Prevalence, antimicrobial resistance, and relatedness of Salmonella isolated from chickens and pigs on farms, abattoirs, and markets in Sichuan Province, China","volume":"14","author":"Ma","year":"2017","journal-title":"Foodborne Pathog. Dis."},{"issue":"10","key":"10.1016\/j.vetmic.2024.109993_bib18","doi-asserted-by":"crossref","first-page":"7967","DOI":"10.3168\/jds.2017-13040","article-title":"Effects of feeding pasteurized waste milk to dairy calves on phenotypes and genotypes of antimicrobial resistance in fecal Escherichia coli isolates before and after weaning","volume":"100","author":"Maynou","year":"2017","journal-title":"J. Dairy Sci."},{"issue":"10","key":"10.1016\/j.vetmic.2024.109993_bib19","doi-asserted-by":"crossref","first-page":"1635","DOI":"10.4315\/0362-028X.JFP-17-019","article-title":"Prevalence and antimicrobial resistance of Salmonella isolates recovered from retail pork in major village markets in Tai'an Region, China","volume":"80","author":"Miao","year":"2017","journal-title":"J. Food Prot."},{"key":"10.1016\/j.vetmic.2024.109993_bib20","doi-asserted-by":"crossref","DOI":"10.3389\/fvets.2022.779900","article-title":"The Impact of Overstocking and Negative Energy Balance on Quantitative Measurement of Non-typhoidal Salmonella in Periparturient Dairy Cattle","volume":"9","author":"Munoz-Vargas","year":"2022","journal-title":"Front. Vet. Sci."},{"issue":"33","key":"10.1016\/j.vetmic.2024.109993_bib21","doi-asserted-by":"crossref","first-page":"1109","DOI":"10.15585\/mmwr.mm7033a1","article-title":"Protracted, intermittent outbreak of Salmonella mbandaka linked to a restaurant - Michigan, 2008-2019","volume":"70","author":"Nettleton","year":"2021","journal-title":"Mmwr. Morb. Mortal. Wkly. Rep."},{"issue":"2","key":"10.1016\/j.vetmic.2024.109993_bib22","first-page":"85","article-title":"Antimicrobial resistance gene expression associated with multidrug resistant Salmonella spp. isolated from retail meat in Hanoi, Vietnam","volume":"20","author":"Nghiem","year":"2017","journal-title":"Int. Microbiol."},{"issue":"5","key":"10.1016\/j.vetmic.2024.109993_bib23","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02479-22","article-title":"Comprehensive assessment of subtyping methods for improved surveillance of foodborne Salmonella","volume":"10","author":"Pan","year":"2022","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.vetmic.2024.109993_bib24","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0030619","article-title":"NGS QC Toolkit: a toolkit for quality control of next generation sequencing data","volume":"7","author":"Patel","year":"2012","journal-title":"PLoS One"},{"issue":"4","key":"10.1016\/j.vetmic.2024.109993_bib25","doi-asserted-by":"crossref","first-page":"574","DOI":"10.2460\/javma.2004.225.574","article-title":"Isolation of Salmonella spp from the environment of dairies without any history of clinical salmonellosis","volume":"225","author":"Peek","year":"2004","journal-title":"J. Am. Vet. Med. Assoc."},{"issue":"5","key":"10.1016\/j.vetmic.2024.109993_bib26","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01375-22","article-title":"Comparing multiple locus variable-number tandem repeat analyses with whole-genome sequencing as typing method for Salmonella enteritidis surveillance in The Netherlands","volume":"10","author":"Pijnacker","year":"2022","journal-title":"Microbiol. Spectr."},{"issue":"3","key":"10.1016\/j.vetmic.2024.109993_bib27","doi-asserted-by":"crossref","first-page":"309","DOI":"10.3109\/1040841X.2013.837862","article-title":"Molecular methods for serovar determination of Salmonella","volume":"41","author":"Shi","year":"2015","journal-title":"Crit. Rev. Microbiol."},{"issue":"5","key":"10.1016\/j.vetmic.2024.109993_bib28","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01257-22","article-title":"Genomic characterization of antimicrobial-resistant Salmonella enterica in duck, chicken, and pig farms and retail markets in Eastern China","volume":"10","author":"Tang","year":"2022","journal-title":"Microbiol. Spectr."},{"issue":"11","key":"10.1016\/j.vetmic.2024.109993_bib29","doi-asserted-by":"crossref","first-page":"1465","DOI":"10.1016\/j.cmi.2022.05.024","article-title":"External validation of WGS-based antimicrobial susceptibility prediction tools, KOVER-AMR and ResFinder 4.1, for Escherichia coli clinical isolates","volume":"28","author":"Verschuuren","year":"2022","journal-title":"Clin. Microbiol. Infect."},{"issue":"5","key":"10.1016\/j.vetmic.2024.109993_bib30","doi-asserted-by":"crossref","first-page":"1286","DOI":"10.1093\/jac\/dkac061","article-title":"Comparison of the prevalence and molecular characteristics of fosA3 and fosA7 among Salmonella isolates from food animals in China. The","volume":"77","author":"Wang","year":"2022","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.vetmic.2024.109993_bib31","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.781306","article-title":"Chromosomally Located fosA7 in Salmonella Isolates From China","volume":"12","author":"Wang","year":"2021","journal-title":"Front Microbiol"},{"key":"10.1016\/j.vetmic.2024.109993_bib32","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2022.111007","article-title":"Whole-genome sequencing analysis reveals pig as the main reservoir for persistent evolution of Salmonella enterica serovar Rissen causing human salmonellosis","volume":"154","author":"Wang","year":"2022","journal-title":"Food Res. Int."},{"key":"10.1016\/j.vetmic.2024.109993_bib33","doi-asserted-by":"crossref","first-page":"12827","DOI":"10.1038\/ncomms12827","article-title":"International typhoid, consortium an extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid","volume":"7","author":"Wong","year":"2016","journal-title":"Nat. Commun."},{"key":"10.1016\/j.vetmic.2024.109993_bib34","doi-asserted-by":"crossref","DOI":"10.1016\/j.aca.2022.339657","article-title":"A microfluidic genoserotyping strategy for fast and objective identification of common Salmonella serotypes isolated from retail food samples in China","volume":"1201","author":"Xiang","year":"2022","journal-title":"Anal. Chim. Acta"},{"issue":"1","key":"10.1016\/j.vetmic.2024.109993_bib35","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1080\/22221751.2019.1699450","article-title":"Pig as a reservoir of CRISPR type TST4 Salmonella enterica serovar Typhimurium monophasic variant during 2009-2017 in China","volume":"9","author":"Xie","year":"2020","journal-title":"Emerg. Microbes Infect."},{"issue":"1","key":"10.1016\/j.vetmic.2024.109993_bib36","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1186\/s12879-021-06340-z","article-title":"Characterization of Salmonella serotypes prevalent in asymptomatic people and patients","volume":"21","author":"Xu","year":"2021","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.vetmic.2024.109993_bib37","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2021.109338","article-title":"Characterization of CRISPR array in Salmonella enterica from asymptomatic people and patients","volume":"355","author":"Zhang","year":"2021","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.vetmic.2024.109993_bib38","doi-asserted-by":"crossref","first-page":"2265","DOI":"10.3389\/fmicb.2019.02265","article-title":"Incidence and characterization of Salmonella isolates from raw meat products sold at small markets in Hubei Province China","volume":"10","author":"Zhou","year":"2019","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.vetmic.2024.109993_bib39","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1101\/gr.251678.119","article-title":"The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity","volume":"30","author":"Zhou","year":"2020","journal-title":"Genome Res."}],"container-title":["Veterinary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113524000154?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113524000154?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,7]],"date-time":"2025-10-07T23:24:21Z","timestamp":1759879461000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0378113524000154"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,3]]},"references-count":39,"alternative-id":["S0378113524000154"],"URL":"https:\/\/doi.org\/10.1016\/j.vetmic.2024.109993","relation":{},"ISSN":["0378-1135"],"issn-type":[{"value":"0378-1135","type":"print"}],"subject":[],"published":{"date-parts":[[2024,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Prevalence and genetic characteristics of Salmonella enterica serovar Meleagridis from animals and humans","name":"articletitle","label":"Article Title"},{"value":"Veterinary Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.vetmic.2024.109993","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"109993"}}