{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T23:29:54Z","timestamp":1786490994127,"version":"build-2736575974"},"reference-count":61,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/100011929","name":"Foundation for Food and Agriculture Research","doi-asserted-by":"publisher","award":["ICASATWG\\u22120000000022"],"award-info":[{"award-number":["ICASATWG\\u22120000000022"]}],"id":[{"id":"10.13039\/100011929","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Veterinary Microbiology"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.vetmic.2026.111136","type":"journal-article","created":{"date-parts":[[2026,7,11]],"date-time":"2026-07-11T15:29:21Z","timestamp":1783783761000},"page":"111136","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Genotypic-phenotypic concordance of Pasteurella multocida isolated from bovine respiratory disease cases"],"prefix":"10.1016","volume":"320","author":[{"given":"T.R.","family":"Sheets","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A.C.","family":"Ellis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.L.","family":"Wickware","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Gribskov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.K.","family":"Pillai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.S.","family":"Verma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"T.A.","family":"Johnson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"11","key":"10.1016\/j.vetmic.2026.111136_bib1","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.3390\/antibiotics14111114","article-title":"Evaluating the diagnostic performance of long-read metagenomic sequencing compared to culture and antimicrobial susceptibility testing for detection of bovine respiratory bacteria and indicators of antimicrobial resistance","volume":"14","author":"Abi Younes","year":"2025","journal-title":"Antibiotics"},{"key":"10.1016\/j.vetmic.2026.111136_bib2","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1016\/j.tim.2020.12.002","article-title":"Forest and trees: exploring bacterial virulence with genome-wide association studies and machine learning","volume":"29","author":"Allen","year":"2021","journal-title":"Trends Microbiol. [Internet]."},{"key":"10.1016\/j.vetmic.2026.111136_bib3","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib4","unstructured":"Andrews S. (n.d.)FastQC A Quality Control tool for High Throughput Sequence Data [Internet]. Babraham Bioinformatics; Available from: https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/."},{"key":"10.1016\/j.vetmic.2026.111136_bib5","article-title":"Antimicrobial susceptibility of bacteria that cause bovine respiratory disease complex in Alberta, Canada","volume":"4","author":"Anholt","year":"2017","journal-title":"Front. Vet. Sci. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib6","first-page":"1521","article-title":"A retrospective analysis of risk factors associated with bovine respiratory disease treatment failure in feedlot cattle1","volume":"95","author":"Avra","year":"2017","journal-title":"J. Anim. Sci. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib7","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/1471-2164-9-75","article-title":"The RAST server: rapid annotations using subsystems technology","volume":"9","author":"Aziz","year":"2008","journal-title":"BMC Genom. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib8","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib9","article-title":"An evaluation of the economic effects of bovine respiratory disease on animal performance, carcass traits, and economic outcomes in feedlot cattle defined using four BRD diagnosis methods","volume":"98","author":"Blakebrough-Hall","year":"2020","journal-title":"J. Anim. Sci. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib10","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib11","article-title":"Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis","volume":"6","author":"Bradley","year":"2015","journal-title":"Nat. Commun. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib12","doi-asserted-by":"crossref","first-page":"8365","DOI":"10.1038\/srep08365","article-title":"RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes","volume":"5","author":"Brettin","year":"2015","journal-title":"Sci. Rep. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib13","doi-asserted-by":"crossref","first-page":"5819","DOI":"10.1128\/JB.186.17.5819-5825.2004","article-title":"Thermus thermophilus L11 Methyltransferase, PrmA, Is Dispensable for Growth and Preferentially Modifies Free Ribosomal Protein L11 Prior to Ribosome Assembly","volume":"186","author":"Cameron","year":"2004","journal-title":"J. Bacteriol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib14","doi-asserted-by":"crossref","unstructured":"Cernicchiaro N., White B.J., Renter D.G., Babcock A.H. Evaluation of economic and performance outcomes associated with the number of treatments after an initial diagnosis of bovine respiratory disease in commercial feeder cattle. 2013 [cited 2024 Jul 23]; Available from: https:\/\/avmajournals.avma.org\/view\/journals\/ajvr\/74\/2\/ajvr.74.2.300.xml.","DOI":"10.2460\/ajvr.74.2.300"},{"key":"10.1016\/j.vetmic.2026.111136_bib15","article-title":"Prediction of Pasteurella multocida serotypes based on whole genomic sequences","volume":"271","author":"Christensen","year":"2022","journal-title":"Vet. Microbiol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib16","unstructured":"CLSI. Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals, 6th Edition [Internet]. Clinical and Laboratory Standards Institute; 2023. Available from: http:\/\/vet01s.edaptivedocs.net\/dashboard.aspx."},{"key":"10.1016\/j.vetmic.2026.111136_bib17","doi-asserted-by":"crossref","first-page":"480","DOI":"10.1111\/j.1751-0813.2003.tb13367.x","article-title":"The medicine and epidemiology of bovine respiratory disease in feedlots","volume":"81","author":"Cusack","year":"2003","journal-title":"Aust. Vet. J. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib18","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1017\/S1466252307001399","article-title":"Pasteurella multocida and bovine respiratory disease","volume":"8","author":"Dabo","year":"2007","journal-title":"Anim. Health Res. Rev."},{"key":"10.1016\/j.vetmic.2026.111136_bib19","doi-asserted-by":"crossref","first-page":"2902","DOI":"10.1111\/jam.15738","article-title":"To be, or not to be\u2019\u2014The dilemma of \u2018silent\u2019 antimicrobial resistance genes in bacteria","volume":"133","author":"Deekshit","year":"2022","journal-title":"J. Appl. Microbiol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib20","article-title":"A neglected and emerging antimicrobial resistance gene encodes for a serine-dependent macrolide esterase","volume":"120","author":"Dhindwal","year":"2023","journal-title":"Proc. Natl. Acad. Sci. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib21","article-title":"Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study","volume":"6","author":"Doyle","year":"2020","journal-title":"Microb. Genom. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib22","unstructured":"Drouin, A., 2018. Interpret. Kover Models [Internet](Available from)https:\/\/aldro61.github.io\/kover\/doc_interp.html."},{"key":"10.1016\/j.vetmic.2026.111136_bib23","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1186\/s12864-016-2889-6","article-title":"Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons","volume":"17","author":"Drouin","year":"2016","journal-title":"BMC Genom. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib24","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1002\/(SICI)1521-1878(200004)22:4<372::AID-BIES7>3.0.CO;2-J","article-title":"Canalization in evolutionary genetics: a stabilizing theory?","volume":"22","author":"Gibson","year":"2000","journal-title":"BioEssays [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib25","doi-asserted-by":"crossref","first-page":"645","DOI":"10.1109\/TCBB.2013.68","article-title":"GenomeTools: a comprehensive software library for efficient processing of structured genome annotations","volume":"10","author":"Gremme","year":"2013","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib26","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1016\/j.cvfa.2010.04.004","article-title":"Bacterial pathogens of the bovine respiratory disease complex","volume":"26","author":"Griffin","year":"2010","journal-title":"Vet. Clin. North. Am. Food Anim. Pract. [Internet]."},{"key":"10.1016\/j.vetmic.2026.111136_bib27","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1574-6968.2006.00442.x","article-title":"Pasteurella multocida pathogenesis:125 years after Pasteur","volume":"265","author":"Harper","year":"2006","journal-title":"FEMS Microbiol. Lett. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib29","doi-asserted-by":"crossref","first-page":"3987","DOI":"10.1128\/JB.00087-07","article-title":"Biochemical characterization and physiological properties of Escherichia coli UDP-N-Acetylmuramate:l-Alanyl-\u03b3-d-Glutamyl-meso- Diaminopimelate Ligase","volume":"189","author":"Herv\u00e9","year":"2007","journal-title":"J. Bacteriol. [Internet]"},{"issue":"2","key":"10.1016\/j.vetmic.2026.111136_bib30","doi-asserted-by":"crossref","first-page":"6","DOI":"10.2165\/00003495-199958002-00002","article-title":"Mode of action of fluoroquinolones","volume":"58","author":"Hooper","year":"1999","journal-title":"Drugs"},{"key":"10.1016\/j.vetmic.2026.111136_bib31","article-title":"A fast and agnostic method for bacterial genome-wide association studies: bridging the gap between k-mers and genetic events","volume":"14","author":"Jaillard","year":"2018","journal-title":"PLOS Genet. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib32","doi-asserted-by":"crossref","first-page":"W5","DOI":"10.1093\/nar\/gkn201","article-title":"NCBI BLAST: a better web interface","volume":"36","author":"Johnson","year":"2008","journal-title":"Nucleic Acids Res. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib33","doi-asserted-by":"crossref","first-page":"2475","DOI":"10.1128\/AAC.00092-11","article-title":"Molecular basis of macrolide, triamilide, and lincosamide resistance in pasteurella multocida from bovine respiratory disease","volume":"55","author":"Kadlec","year":"2011","journal-title":"Antimicrob. Agents Chemother. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib34","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1292\/jvms.16-0489","article-title":"Development of a one-run real-time PCR detection system for pathogens associated with bovine respiratory disease complex","volume":"79","author":"Kishimoto","year":"2017","journal-title":"J. Vet. Med. Sci."},{"issue":"12","key":"10.1016\/j.vetmic.2026.111136_bib35","doi-asserted-by":"crossref","first-page":"1655","DOI":"10.1292\/jvms.14-0240","article-title":"Fluoroquinolone resistance mechanism of clinical isolates and selected mutants of Pasteurella multocida from bovine respiratory disease in China","volume":"76","author":"Kong","year":"2014","journal-title":"J. Vet. Med. Sci."},{"key":"10.1016\/j.vetmic.2026.111136_bib36","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1186\/1471-2164-9-517","article-title":"A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes","volume":"9","author":"Kurtz","year":"2008","journal-title":"BMC Genom. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib37","doi-asserted-by":"crossref","first-page":"3348","DOI":"10.1128\/AAC.00419-13","article-title":"The comprehensive antibiotic resistance database","volume":"57","author":"McArthur","year":"2013","journal-title":"Antimicrob. Agents Chemother. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib38","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1093\/jac\/dkr406","article-title":"ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: analysis of the regions that comprise 12 antimicrobial resistance genes","volume":"67","author":"Michael","year":"2012","journal-title":"J. Antimicrob. Chemother. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib39","doi-asserted-by":"crossref","first-page":"1088","DOI":"10.1093\/bioinformatics\/btv697","article-title":"MetaQUAST: evaluation of metagenome assemblies","volume":"32","author":"Mikheenko","year":"2016","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib40","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1021\/acsagscitech.0c00072","article-title":"Loop-mediated isothermal amplification for the detection of pasteurella multocida, mannheimia haemolytica, and histophilus somni in bovine nasal samples","volume":"1","author":"Mohan","year":"2021","journal-title":"ACS Agric. Sci. Technol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib41","doi-asserted-by":"crossref","first-page":"592","DOI":"10.3389\/fmicb.2018.00592","article-title":"Prediction of phenotypic antimicrobial resistance profiles from whole genome sequences of non-typhoidal Salmonella enterica","volume":"9","author":"Neuert","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.vetmic.2026.111136_bib42","doi-asserted-by":"crossref","first-page":"1166","DOI":"10.1093\/bioinformatics\/bts091","article-title":"the UGENE team. Unipro UGENE: a unified bioinformatics toolkit","volume":"28","author":"Okonechnikov","year":"2012","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib43","doi-asserted-by":"crossref","first-page":"D206","DOI":"10.1093\/nar\/gkt1226","article-title":"The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)","volume":"42","author":"Overbeek","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.vetmic.2026.111136_bib44","doi-asserted-by":"crossref","first-page":"3059","DOI":"10.1534\/g3.117.1137","article-title":"Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease","volume":"7","author":"Owen","year":"2017","journal-title":"G3 Genes. |Genomes|Genet. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib45","unstructured":"R: A language and environment for statistical computing. (n.d.)[Internet]. R Foundation for Statistical Computing, Vienna, Austria; Available from: https:\/\/www.R-project.org\/."},{"key":"10.1016\/j.vetmic.2026.111136_bib46","article-title":"Association mapping from sequencing reads using k-mers","volume":"7","author":"Rahman","year":"2018","journal-title":"Flint J. Editor. eLife [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib47","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1016\/j.prevetmed.2011.09.003","article-title":"Bovine respiratory disease: efficacy of different prophylactic treatments in veal calves and antimicrobial resistance of isolated Pasteurellaceae","volume":"103","author":"R\u00e9rat","year":"2012","journal-title":"Prev. Vet. Med. [Internet]."},{"key":"10.1016\/j.vetmic.2026.111136_bib48","article-title":"SeqKit2: a swiss army knife for sequence and alignment processing","volume":"3","author":"Shen","year":"2024","journal-title":"iMeta [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib49","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1017\/S1466252320000110","article-title":"Risk factors for bovine respiratory disease in beef cattle","volume":"21","author":"Smith","year":"2020","journal-title":"Anim. Health Res. Rev. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib50","doi-asserted-by":"crossref","first-page":"288","DOI":"10.3390\/microorganisms8020288","article-title":"Antimicrobial resistance in members of the bacterial bovine respiratory disease complex isolated from lung tissue of cattle mortalities managed with or without the use of antimicrobials","volume":"8","author":"Stanford","year":"2020","journal-title":"Microorganisms"},{"key":"10.1016\/j.vetmic.2026.111136_bib51","doi-asserted-by":"crossref","first-page":"2234","DOI":"10.1093\/jac\/dkt180","article-title":"Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data","volume":"68","author":"Stoesser","year":"2013","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.vetmic.2026.111136_bib52","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1016\/j.vetmic.2017.07.013","article-title":"Prevalence and antimicrobial susceptibility of Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni isolated from the lower respiratory tract of healthy feedlot cattle and those diagnosed with bovine respiratory disease","volume":"208","author":"Timsit","year":"2017","journal-title":"Vet. Microbiol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib53","doi-asserted-by":"crossref","first-page":"2556","DOI":"10.1093\/bioinformatics\/bty157","article-title":"Integrating long-range connectivity information into de Bruijn graphs","volume":"34","author":"Turner","year":"2018","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib54","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview Version 2\u2014a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinforma. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib55","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1016\/j.cvfa.2009.10.009","article-title":"Antimicrobial resistance in bovine respiratory disease pathogens: measures, trends, and impact on efficacy","volume":"26","author":"Watts","year":"2010","journal-title":"Vet. Clin. North. Am. Food Anim. Pract. [Internet]."},{"key":"10.1016\/j.vetmic.2026.111136_bib56","article-title":"Phenotypic antibiotic resistance prediction using antibiotic resistance genes and machine learning models in Mannheimia haemolytica","volume":"302","author":"Wickware","year":"2025","journal-title":"Vet. Microbiol. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib57","series-title":"Pasteurella multocida: Molecular Biology, Toxins and Infection [Internet].","first-page":"1","article-title":"Pasteurella multocida: diseases and pathogenesis","author":"Wilkie","year":"2012"},{"key":"10.1016\/j.vetmic.2026.111136_bib58","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1016\/j.vetmic.2018.06.005","article-title":"Multidrug resistant Mannheimia haemolytica isolated from high-risk beef stocker cattle after antimicrobial metaphylaxis and treatment for bovine respiratory disease","volume":"221","author":"Woolums","year":"2018","journal-title":"Vet. Microbiol. [Internet]."},{"key":"10.1016\/j.vetmic.2026.111136_bib59","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1093\/jac\/dks496","article-title":"Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing","volume":"68","author":"Zankari","year":"2013","journal-title":"J. Antimicrob. Chemother. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib60","article-title":"Genomic and transcriptomic analysis of bovine pasteurella multocida serogroup a strain reveals insights into virulence attenuation","volume":"8","author":"Zhan","year":"2021","journal-title":"Front. Vet. Sci. [Internet]"},{"key":"10.1016\/j.vetmic.2026.111136_bib61","article-title":"Fecal microbiota transplantation donor and dietary fiber intervention collectively contribute to gut health in a mouse model","volume":"13","author":"Zhong","year":"2022","journal-title":"Front. Immunol. [Internet]"}],"container-title":["Veterinary Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113526002737?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378113526002737?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,11]],"date-time":"2026-08-11T22:59:23Z","timestamp":1786489163000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0378113526002737"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":61,"alternative-id":["S0378113526002737"],"URL":"https:\/\/doi.org\/10.1016\/j.vetmic.2026.111136","relation":{},"ISSN":["0378-1135"],"issn-type":[{"value":"0378-1135","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genotypic-phenotypic concordance of Pasteurella multocida isolated from bovine respiratory disease cases","name":"articletitle","label":"Article Title"},{"value":"Veterinary Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.vetmic.2026.111136","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"111136"}}