{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,24]],"date-time":"2025-09-24T00:03:48Z","timestamp":1758672228142,"version":"3.44.0"},"reference-count":17,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2015,9,25]],"date-time":"2015-09-25T00:00:00Z","timestamp":1443139200000},"content-version":"vor","delay-in-days":632,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/100000738","name":"The Department of Veterans Affairs","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100000738","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"crossref","award":["AI090970","AI100665","MH097520","DA034978","AI36214","MH62512","AI096113","AI47745"],"award-info":[{"award-number":["AI090970","AI100665","MH097520","DA034978","AI36214","MH62512","AI096113","AI47745"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100010296","name":"James B. Pendleton Charitable Trust","doi-asserted-by":"crossref","award":["AI093163"],"award-info":[{"award-number":["AI093163"]}],"id":[{"id":"10.13039\/100010296","id-type":"DOI","asserted-by":"crossref"}]},{"name":"US National Institutes of Health (NIH)","award":["7UM1AI068636-07"],"award-info":[{"award-number":["7UM1AI068636-07"]}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Virology"],"published-print":{"date-parts":[[2014,1]]},"DOI":"10.1016\/j.virol.2013.11.012","type":"journal-article","created":{"date-parts":[[2013,11,27]],"date-time":"2013-11-27T10:48:03Z","timestamp":1385549283000},"page":"104-108","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["A case cluster demonstrating the relationship between HLA concordance and virologic and disease outcomes in human immunodeficiency virus infection"],"prefix":"10.1016","volume":"449","author":[{"given":"A.","family":"Chaillon","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Gianella","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.","family":"Massanella Luna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.J.","family":"Little","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"D.D.","family":"Richman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.R.","family":"Mehta","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.virol.2013.11.012_bib1","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1038\/nm1741","article-title":"CCL3L1-CCR5 genotype influences durability of immune recovery during antiretroviral therapy of HIV-1-infected individuals","volume":"14","author":"Ahuja","year":"2008","journal-title":"Nat. Med."},{"key":"10.1016\/j.virol.2013.11.012_bib2","doi-asserted-by":"crossref","first-page":"3850","DOI":"10.1093\/nar\/gkg575","article-title":"Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes","volume":"31","author":"Beerenwinkel","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.virol.2013.11.012_bib3","doi-asserted-by":"crossref","first-page":"18re1","DOI":"10.1126\/scitranslmed.3000447","article-title":"The origins of sexually transmitted HIV among men who have sex with men","volume":"2","author":"Butler","year":"2010","journal-title":"Sci. Transl. Med."},{"key":"10.1016\/j.virol.2013.11.012_bib4","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1086\/595704","article-title":"Contribution of Immunological and virological factors to extremely severe primary HIV type 1 infection","volume":"48","author":"Dalmau","year":"2009","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.virol.2013.11.012_bib5","doi-asserted-by":"crossref","first-page":"1969","DOI":"10.1093\/molbev\/mss075","article-title":"Bayesian phylogenetics with BEAUti and the BEAST 1.7","volume":"29","author":"Drummond","year":"2012","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virol.2013.11.012_bib6","doi-asserted-by":"crossref","first-page":"1703","DOI":"10.1002\/jmv.23398","article-title":"Impact of seminal cytomegalovirus replication on HIV-1 dynamics between blood and semen","volume":"84","author":"Gianella","year":"2012","journal-title":"J. Med. Virol."},{"key":"10.1016\/j.virol.2013.11.012_bib7","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1038\/35085576","article-title":"Evolution and transmission of stable CTL escape mutations in HIV infection","volume":"412","author":"Goulder","year":"2001","journal-title":"Nature"},{"key":"10.1016\/j.virol.2013.11.012_bib8","doi-asserted-by":"crossref","first-page":"1668","DOI":"10.1056\/NEJM200105313442203","article-title":"Effect of a single amino acid change in MHC class I molecules on the rate of progression to AIDS","volume":"344","author":"Gao","year":"2001","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.virol.2013.11.012_bib9","doi-asserted-by":"crossref","first-page":"8359","DOI":"10.1128\/JVI.02582-10","article-title":"Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants","volume":"85","author":"Gianella","year":"2011","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2013.11.012_bib10","doi-asserted-by":"crossref","first-page":"941","DOI":"10.1097\/QAD.0b013e328337b12e","article-title":"HIV RNA level in early infection is predicted by viral load in the transmission source","volume":"24","author":"Hecht","year":"2010","journal-title":"AIDS London Engl."},{"key":"10.1016\/j.virol.2013.11.012_bib11","doi-asserted-by":"crossref","first-page":"W509","DOI":"10.1093\/nar\/gkn202","article-title":"NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11","volume":"36","author":"Lundegaard","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.virol.2013.11.012_bib12","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1056\/NEJMoa1110187","article-title":"Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy","volume":"368","author":"Le","year":"2013","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.virol.2013.11.012_bib13","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1016\/S1471-4914(01)02131-1","article-title":"HLA and AIDS: a cautionary tale","volume":"7","author":"O'Brien","year":"2001","journal-title":"Trends Mol. Med."},{"key":"10.1016\/j.virol.2013.11.012_bib14","doi-asserted-by":"crossref","first-page":"e1003041","DOI":"10.1371\/journal.ppat.1003041","article-title":"Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis","volume":"8","author":"Prince","year":"2012","journal-title":"PLoS Pathogens"},{"key":"10.1016\/j.virol.2013.11.012_bib15","doi-asserted-by":"crossref","first-page":"4144","DOI":"10.1073\/pnas.0630530100","article-title":"Rapid evolution of the neutralizing antibody response to HIV type 1 infection","volume":"100","author":"Richman","year":"2003","journal-title":"Proc. Natl. Acad. Sci. U. S."},{"key":"10.1016\/j.virol.2013.11.012_bib16","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2105-12-119","article-title":"ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data","volume":"12","author":"Zagordi","year":"2011","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.virol.2013.11.012_bib17","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1084\/jem.20052116","article-title":"Constraints on HIV-1 evolution and immunodominance revealed in monozygotic adult twins infected with the same virus","volume":"203","author":"Draenert","year":"2006","journal-title":"J. Exp. Med."}],"container-title":["Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0042682213006259?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0042682213006259?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T00:22:45Z","timestamp":1758586965000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0042682213006259"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,1]]},"references-count":17,"alternative-id":["S0042682213006259"],"URL":"https:\/\/doi.org\/10.1016\/j.virol.2013.11.012","relation":{},"ISSN":["0042-6822"],"issn-type":[{"type":"print","value":"0042-6822"}],"subject":[],"published":{"date-parts":[[2014,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A case cluster demonstrating the relationship between HLA concordance and virologic and disease outcomes in human immunodeficiency virus infection","name":"articletitle","label":"Article Title"},{"value":"Virology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.virol.2013.11.012","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2013 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}