{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T12:45:54Z","timestamp":1791204354830,"version":"4.2.0"},"reference-count":45,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2014,7,30]],"date-time":"2014-07-30T00:00:00Z","timestamp":1406678400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-sa\/3.0\/"}],"funder":[{"DOI":"10.13039\/100008782","name":"University of Hawaii","doi-asserted-by":"crossref","award":["0549514"],"award-info":[{"award-number":["0549514"]}],"id":[{"id":"10.13039\/100008782","id-type":"DOI","asserted-by":"crossref"}]},{"name":"California Academy of Sciences Research Excellence Award program","award":["PSWRCE U54AI065359"],"award-info":[{"award-number":["PSWRCE U54AI065359"]}]},{"name":"NIH\/NIAID Pacific Southwest Regional Center of Excellence"},{"DOI":"10.13039\/501100004156","name":"Mahidol University","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100004156","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Virology"],"published-print":{"date-parts":[[2014,9]]},"DOI":"10.1016\/j.virol.2014.06.036","type":"journal-article","created":{"date-parts":[[2014,8,9]],"date-time":"2014-08-09T09:45:23Z","timestamp":1407577523000},"page":"312-319","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":48,"special_numbering":"C","title":["Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses"],"prefix":"10.1016","volume":"464-465","author":[{"given":"James Angus","family":"Chandler","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Panpim","family":"Thongsripong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amy","family":"Green","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pattamaporn","family":"Kittayapong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bruce A.","family":"Wilcox","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gary P.","family":"Schroth","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Durrell D.","family":"Kapan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shannon N.","family":"Bennett","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.virol.2014.06.036_bib1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.virol.2014.06.036_bib2","doi-asserted-by":"crossref","first-page":"e878","DOI":"10.1371\/journal.pntd.0000878","article-title":"Arbovirus Detection in Insect Vectors by Rapid, High-Throughput Pyrosequencing","volume":"4","author":"Bishop-Lilly","year":"2010","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.virol.2014.06.036_bib3","series-title":"Bunyaviridae: Molecular and Cellular Biology","first-page":"95","article-title":"Molecular Biology of Phleboviruses","author":"Bouloy","year":"2011"},{"key":"10.1016\/j.virol.2014.06.036_bib4","doi-asserted-by":"crossref","first-page":"1371","DOI":"10.1128\/JVI.75.3.1371-1377.2001","article-title":"Genetic evidence for an interferon-antagonistic function of rift valley fever virus nonstructural protein NSs","volume":"75","author":"Bouloy","year":"2001","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib5","series-title":"Wildlife and Emerging Zoonotic Diseases: The Biology, Circumstances and Consequences of Cross-Species Transmission","author":"Childs","year":"2007"},{"key":"10.1016\/j.virol.2014.06.036_bib6","doi-asserted-by":"crossref","first-page":"574","DOI":"10.3201\/eid1504.081111","article-title":"Genetic diversity of Toscana virus","volume":"15","author":"Collao","year":"2009","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.virol.2014.06.036_bib7","doi-asserted-by":"crossref","first-page":"1969","DOI":"10.1093\/molbev\/mss075","article-title":"Bayesian phylogenetics with BEAUti and the BEAST 1.7","volume":"29","author":"Drummond","year":"2012","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virol.2014.06.036_bib8","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.1038\/nbt0804-1035","article-title":"Where did the BLOSUM62 alignment score matrix come from?","volume":"22","author":"Eddy","year":"2004","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.virol.2014.06.036_bib9","doi-asserted-by":"crossref","first-page":"2038","DOI":"10.1093\/molbev\/msq088","article-title":"Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses","volume":"27","author":"Firth","year":"2010","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virol.2014.06.036_bib10","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1016\/j.jtbi.2008.04.005","article-title":"The conditioned reconstructed process","volume":"253","author":"Gernhard","year":"2008","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.virol.2014.06.036_bib11","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1093\/molbev\/msp259","article-title":"Seaview version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building","volume":"27","author":"Gouy","year":"2010","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virol.2014.06.036_bib12","doi-asserted-by":"crossref","first-page":"644","DOI":"10.1038\/nbt.1883","article-title":"Full-length transcriptome assembly from RNA-Seq data without a reference genome","volume":"29","author":"Grabherr","year":"2011","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.virol.2014.06.036_bib13","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1016\/S0188-4409(02)00378-8","article-title":"The global emergence\/resurgence of arboviral diseases as public health problems","volume":"33","author":"Gubler","year":"2002","journal-title":"Arch. Med. Res."},{"key":"10.1016\/j.virol.2014.06.036_bib14","doi-asserted-by":"crossref","first-page":"e58026","DOI":"10.1371\/journal.pone.0058026","article-title":"Detection of arboviruses and other micro-organisms in experimentally infected mosquitoes using massively parallel sequencing","volume":"8","author":"Hall-Mendelin","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.virol.2014.06.036_bib15","doi-asserted-by":"crossref","first-page":"R245","DOI":"10.1016\/S1074-5521(98)90108-9","article-title":"Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products","volume":"5","author":"Handelsman","year":"1998","journal-title":"Chem. Biol."},{"key":"10.1016\/j.virol.2014.06.036_bib16","doi-asserted-by":"crossref","first-page":"2933","DOI":"10.1128\/JVI.80.6.2933-2940.2006","article-title":"Rescue of infectious rift valley fever virus entirely from cDNA, analysis of virus lacking the NSs gene, and expression of a foreign gene","volume":"80","author":"Ikegami","year":"2006","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib17","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1016\/j.mib.2013.06.005","article-title":"Virus discovery and recent insights into virus diversity in arthropods","volume":"16","author":"Junglen","year":"2013","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.virol.2014.06.036_bib18","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1007\/s10393-009-0260-y","article-title":"Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection","volume":"6","author":"Junglen","year":"2009","journal-title":"Ecohealth"},{"key":"10.1016\/j.virol.2014.06.036_bib19","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virol.2014.06.036_bib20","series-title":"Virus Taxonomy","author":"King","year":"2012"},{"key":"10.1016\/j.virol.2014.06.036_bib21","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1478-7954-9-1","article-title":"Measuring the burden of arboviral diseases: the spectrum of morbidity and mortality from four prevalent infections","volume":"9","author":"Labeaud","year":"2011","journal-title":"Popul. Health Metr."},{"key":"10.1016\/j.virol.2014.06.036_bib22","doi-asserted-by":"crossref","first-page":"R25.1","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.virol.2014.06.036_bib23","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1128\/CMR.00002-06","article-title":"Role of cell culture for virus detection in the age of technology","volume":"20","author":"Leland","year":"2007","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.virol.2014.06.036_bib24","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.virol.2014.06.036_bib25","doi-asserted-by":"crossref","first-page":"e24758","DOI":"10.1371\/journal.pone.0024758","article-title":"Discovery of DNA viruses in wild-caught mosquitoes using small RNA high throughput sequencing","volume":"6","author":"Ma","year":"2011","journal-title":"PLoS ONE"},{"key":"10.1016\/j.virol.2014.06.036_bib26","doi-asserted-by":"crossref","first-page":"9227","DOI":"10.1128\/JVI.00230-11","article-title":"Gouleako virus isolated from West African mosquitoes constitutes a proposed novel genus in the family Bunyaviridae","volume":"85","author":"Marklewitz","year":"2011","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib27","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/j.coviro.2011.12.004","article-title":"Metagenomics and future perspectives in virus discovery","volume":"2","author":"Mokili","year":"2012","journal-title":"Curr. Opin. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib28","doi-asserted-by":"crossref","first-page":"e1156","DOI":"10.1371\/journal.pntd.0001156","article-title":"Host alternation is necessary to maintain the genome stability of rift valley fever virus","volume":"5","author":"Moutailler","year":"2011","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.virol.2014.06.036_bib29","doi-asserted-by":"crossref","first-page":"405","DOI":"10.4269\/ajtmh.1995.53.405","article-title":"Characterization of clone 13, a naturally attenuated avirulent isolate of Rift Valley fever virus, which is altered in the small segment","volume":"53","author":"Muller","year":"1995","journal-title":"Am. J. Trop. Med. Hyg."},{"key":"10.1016\/j.virol.2014.06.036_bib30","doi-asserted-by":"crossref","first-page":"e20579","DOI":"10.1371\/journal.pone.0020579","article-title":"Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes","volume":"6","author":"Ng","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.virol.2014.06.036_bib31","doi-asserted-by":"crossref","first-page":"3187","DOI":"10.1128\/JVI.02719-12","article-title":"Characterization of the Uukuniemi virus group (Phlebovirus: Bunyaviridae): evidence for seven distinct species","volume":"87","author":"Palacios","year":"2013","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib32","doi-asserted-by":"crossref","first-page":"1445","DOI":"10.1099\/vir.0.029389-0","article-title":"Aguacate virus, a new antigenic complex of the genus Phlebovirus (family Bunyaviridae)","volume":"92","author":"Palacios","year":"2011","journal-title":"J. Gen. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib33","doi-asserted-by":"crossref","first-page":"3811","DOI":"10.1128\/JVI.02275-10","article-title":"Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America","volume":"85","author":"Palacios","year":"2011","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib34","unstructured":"Rambaut A., Suchard M.A., Xie D.,Drummond A.J. (2013) Tracer v1.5, Available from \u3008http:\/\/beast.bio.ed.ac.uk\/Tracer\u3009"},{"key":"10.1016\/j.virol.2014.06.036_bib35","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1038\/nbt.1754","article-title":"Integrative genomics viewer","volume":"29","author":"Robinson","year":"2011","journal-title":"Nature Biotechnology"},{"key":"10.1016\/j.virol.2014.06.036_bib36","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1093\/bioinformatics\/btg180","article-title":"MrBayes 3: Bayesian phylogenetic inference under mixed models","volume":"19","author":"Ronquist","year":"2003","journal-title":"Bioinformatics"},{"key":"10.1016\/j.virol.2014.06.036_bib37","first-page":"865","article-title":"PRICE: software for the targeted assembly of components of (META) genomic sequence data","volume":"3","author":"Ruby","year":"2013"},{"key":"10.1016\/j.virol.2014.06.036_bib38","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.00180-12","article-title":"Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease","volume":"3","author":"Stenglein","year":"2012","journal-title":"mBio"},{"key":"10.1016\/j.virol.2014.06.036_bib39","doi-asserted-by":"crossref","first-page":"e2507","DOI":"10.1371\/journal.pntd.0002507","article-title":"Mosquito vector diversity across habitats in central Thailand endemic for dengue and other arthropod-borne diseases","volume":"7","author":"Thongsripong","year":"2013","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.virol.2014.06.036_bib40","doi-asserted-by":"crossref","DOI":"10.1155\/2012\/325659","article-title":"Evolution of mosquito-based arbovirus surveillance systems in Australia","volume":"2012","author":"van den Hurk","year":"2012","journal-title":"J. Biomed. Biotechnol."},{"key":"10.1016\/j.virol.2014.06.036_bib41","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1126\/science.1093857","article-title":"Environmental genome shotgun sequencing of the Sargasso Sea","volume":"304","author":"Venter","year":"2004","journal-title":"Science"},{"key":"10.1016\/j.virol.2014.06.036_bib42","doi-asserted-by":"crossref","first-page":"1538","DOI":"10.1128\/JVI.74.3.1538-1543.2000","article-title":"The S segment of rift valley fever phlebovirus (Bunyaviridae) carries determinants for attenuation and virulence in mice","volume":"74","author":"Vialat","year":"2000","journal-title":"J. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib43","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1007\/s00705-008-0285-5","article-title":"Novel virus discovery in field-collected mosquito larvae using an improved system for rapid determination of viral RNA sequences (RDV ver4.0)","volume":"154","author":"Yamao","year":"2009","journal-title":"Arch. Virol."},{"key":"10.1016\/j.virol.2014.06.036_bib44","doi-asserted-by":"crossref","first-page":"e1485","DOI":"10.1371\/journal.pntd.0001485","article-title":"Virus identification in unknown tropical febrile illness cases using deep sequencing","volume":"6","author":"Yozwiak","year":"2012","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.virol.2014.06.036_bib45","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1098\/rstb.1925.0002","article-title":"A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis, F.R.S.","volume":"213","author":"Yule","year":"1925","journal-title":"Philos. Trans. R. Soc. Lond. B"}],"container-title":["Virology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0042682214003080?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0042682214003080?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T00:28:51Z","timestamp":1758587331000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0042682214003080"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,9]]},"references-count":45,"alternative-id":["S0042682214003080"],"URL":"https:\/\/doi.org\/10.1016\/j.virol.2014.06.036","relation":{},"ISSN":["0042-6822"],"issn-type":[{"value":"0042-6822","type":"print"}],"subject":[],"published":{"date-parts":[[2014,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses","name":"articletitle","label":"Article Title"},{"value":"Virology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.virol.2014.06.036","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2014 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}