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Biol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0400","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1016\/j.chom.2011.06.007","article-title":"DC-SIGN as a receptor for phleboviruses","volume":"10","author":"Lozach","year":"2011","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.virusres.2015.09.006_bib0405","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1016\/j.immuni.2010.01.013","article-title":"Quantitative proteomics reveals subset-specific viral recognition in dendritic cells","volume":"32","author":"Luber","year":"2010","journal-title":"Immunity"},{"key":"10.1016\/j.virusres.2015.09.006_bib0410","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1038\/nm.2341","article-title":"EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy","volume":"17","author":"Lupberger","year":"2011","journal-title":"Nat. Med."},{"key":"10.1016\/j.virusres.2015.09.006_bib0415","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1016\/0092-8674(86)90590-8","article-title":"The T4 gene encodes the AIDS virus receptor and is expressed in the immune system and the brain","volume":"47","author":"Maddon","year":"1986","journal-title":"Cell"},{"key":"10.1016\/j.virusres.2015.09.006_bib0420","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1111\/1469-0691.12029","article-title":"Applying proteomic technology to clinical virology","volume":"19","author":"Mancone","year":"2013","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.virusres.2015.09.006_bib0425","doi-asserted-by":"crossref","first-page":"18132","DOI":"10.1073\/pnas.0800788105","article-title":"Precision proteomics: the case for high resolution and high mass accuracy","volume":"105","author":"Mann","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0430","doi-asserted-by":"crossref","first-page":"2319","DOI":"10.1074\/mcp.M600121-MCP200","article-title":"Modification of host lipid raft proteome upon hepatitis C virus replication","volume":"5","author":"Mannova","year":"2006","journal-title":"Mol. Cell. Proteomics"},{"issue":"Pt 1","key":"10.1016\/j.virusres.2015.09.006_bib0435","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1242\/jcs.110.1.95","article-title":"SFV infection in CHO cells: cell-type specific restrictions to productive virus entry at the cell surface","volume":"110","author":"Marsh","year":"1997","journal-title":"J. Cell Sci."},{"key":"10.1016\/j.virusres.2015.09.006_bib0440","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1083\/jcb.91.3.601","article-title":"Infectious entry pathway of influenza virus in a canine kidney cell line","volume":"91","author":"Matlin","year":"1981","journal-title":"J. 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Life Sci."},{"key":"10.1016\/j.virusres.2015.09.006_bib0510","doi-asserted-by":"crossref","first-page":"e1003463","DOI":"10.1371\/journal.ppat.1003463","article-title":"The HCMV gH\/gL\/UL128-131 complex triggers the specific cellular activation required for efficient viral internalization into target monocytes","volume":"9","author":"Nogalski","year":"2013","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.virusres.2015.09.006_bib0515","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1016\/j.chom.2011.10.014","article-title":"Adeno-associated virus 2 infection requires endocytosis through the CLIC\/GEEC pathway","volume":"10","author":"Nonnenmacher","year":"2011","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.virusres.2015.09.006_bib0520","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1016\/j.cell.2006.09.026","article-title":"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks","volume":"127","author":"Olsen","year":"2006","journal-title":"Cell"},{"key":"10.1016\/j.virusres.2015.09.006_bib0525","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1074\/mcp.M200025-MCP200","article-title":"Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics","volume":"1","author":"Ong","year":"2002","journal-title":"Mol. 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A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0540","doi-asserted-by":"crossref","first-page":"D358","DOI":"10.1093\/nar\/gkt1115","article-title":"The MIntAct project\u2013IntAct as a common curation platform for 11 molecular interaction databases","volume":"42","author":"Orchard","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.virusres.2015.09.006_bib0545","doi-asserted-by":"crossref","first-page":"10612","DOI":"10.1128\/JVI.01370-13","article-title":"Morphological and biochemical characterization of the membranous hepatitis C virus replication compartment","volume":"87","author":"Paul","year":"2013","journal-title":"J. Virol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0550","doi-asserted-by":"crossref","first-page":"921","DOI":"10.1038\/nbt849","article-title":"A proteomics approach to understanding protein ubiquitination","volume":"21","author":"Peng","year":"2003","journal-title":"Nat. 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Rev. Microbiol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0575","doi-asserted-by":"crossref","first-page":"8865","DOI":"10.1038\/srep08865","article-title":"A Dual-reporter system for real-time monitoring and high-throughput CRISPR\/Cas9 library screening of the hepatitis C virus","volume":"5","author":"Ren","year":"2015","journal-title":"Sci. Rep."},{"key":"10.1016\/j.virusres.2015.09.006_bib0580","doi-asserted-by":"crossref","first-page":"859","DOI":"10.2217\/bmm.10.110","article-title":"Mass spectrometry-coupled techniques for viral-related disease biomarker identification","volume":"4","author":"Rhea","year":"2010","journal-title":"Biomark. 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A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0600","doi-asserted-by":"crossref","first-page":"5017","DOI":"10.1093\/emboj\/cdf529","article-title":"The human scavenger receptor class B type I is a novel candidate receptor for the hepatitis C virus","volume":"21","author":"Scarselli","year":"2002","journal-title":"EMBO J."},{"key":"10.1016\/j.virusres.2015.09.006_bib0605","doi-asserted-by":"crossref","first-page":"2248","DOI":"10.1128\/JVI.69.4.2248-2256.1995","article-title":"Physical association of moesin and CD46 as a receptor complex for measles virus","volume":"69","author":"Schneider-Schaulies","year":"1995","journal-title":"J. Virol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0610","doi-asserted-by":"crossref","first-page":"30361","DOI":"10.1074\/jbc.M111.263350","article-title":"Hepatitis C virus is primed by CD81 protein for low pH-dependent fusion","volume":"286","author":"Sharma","year":"2011","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.virusres.2015.09.006_bib0615","doi-asserted-by":"crossref","first-page":"2067","DOI":"10.1128\/JVI.06451-11","article-title":"Identification of cell surface molecules involved in dystroglycan-independent Lassa virus cell entry","volume":"86","author":"Shimojima","year":"2012","journal-title":"J. Virol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0620","doi-asserted-by":"crossref","first-page":"11876","DOI":"10.1073\/pnas.0505577102","article-title":"Inhibitors of cathepsin L prevent severe acute respiratory syndrome coronavirus entry","volume":"102","author":"Simmons","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0625","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.virol.2008.08.040","article-title":"Virus activated filopodia promote human papillomavirus type 31 uptake from the extracellular matrix","volume":"381","author":"Smith","year":"2008","journal-title":"Virology"},{"key":"10.1016\/j.virusres.2015.09.006_bib0630","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1186\/1742-4690-9-97","article-title":"Cell-type specific requirements for thiol\/disulfide exchange during HIV-1 entry and infection","volume":"9","author":"Stantchev","year":"2012","journal-title":"Retrovirology"},{"key":"10.1016\/j.virusres.2015.09.006_bib0635","doi-asserted-by":"crossref","first-page":"6959","DOI":"10.1073\/pnas.0708078105","article-title":"Estimating the size of the human interactome","volume":"105","author":"Stumpf","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0640","doi-asserted-by":"crossref","first-page":"17516","DOI":"10.1073\/pnas.1312374110","article-title":"Pooled RNAi screen identifies ubiquitin ligase Itch as crucial for influenza A virus release from the endosome during virus entry","volume":"110","author":"Su","year":"2013","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.virusres.2015.09.006_bib0645","doi-asserted-by":"crossref","first-page":"2508","DOI":"10.1128\/JVI.02319-12","article-title":"Cellular entry of human papillomavirus type 16 involves activation of the phosphatidylinositol 3-kinase\/Akt\/mTOR pathway and inhibition of autophagy","volume":"87","author":"Surviladze","year":"2013","journal-title":"J. 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Med."},{"key":"10.1016\/j.virusres.2015.09.006_bib0670","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1007\/s00705-012-1596-0","article-title":"Surface proteins of C6\/36 cells involved in dengue virus 4 binding and entry","volume":"158","author":"Vega-Almeida","year":"2013","journal-title":"Arch. Virol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0675","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1038\/nmeth.1280","article-title":"An empirical framework for binary interactome mapping","volume":"6","author":"Venkatesan","year":"2009","journal-title":"Nat. Methods"},{"key":"10.1016\/j.virusres.2015.09.006_bib0680","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1016\/j.copbio.2008.06.001","article-title":"High confidence determination of specific protein\u2013protein interactions using quantitative mass spectrometry","volume":"19","author":"Vermeulen","year":"2008","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.virusres.2015.09.006_bib0685","first-page":"237","article-title":"Arrest all accessories\u2013inhibition of hepatitis C virus by compounds that target host factors","volume":"12","author":"von Hahn","year":"2011","journal-title":"Discov. Med."},{"key":"10.1016\/j.virusres.2015.09.006_bib0690","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1038\/nm1236","article-title":"Integrin alphavbeta3 is a coreceptor for human cytomegalovirus","volume":"11","author":"Wang","year":"2005","journal-title":"Nat. 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