{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,14]],"date-time":"2026-05-14T04:13:01Z","timestamp":1778731981619,"version":"3.51.4"},"reference-count":59,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,11,14]],"date-time":"2024-11-14T00:00:00Z","timestamp":1731542400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004263","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado do Rio Grande do Sul","doi-asserted-by":"publisher","award":["21\/2551-0000703-6"],"award-info":[{"award-number":["21\/2551-0000703-6"]}],"id":[{"id":"10.13039\/501100004263","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","doi-asserted-by":"publisher","award":["307209\/2023-7"],"award-info":[{"award-number":["307209\/2023-7"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","doi-asserted-by":"publisher","award":["EPI_SET_240907ht"],"award-info":[{"award-number":["EPI_SET_240907ht"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Virus Research"],"published-print":{"date-parts":[[2025,1]]},"DOI":"10.1016\/j.virusres.2024.199500","type":"journal-article","created":{"date-parts":[[2024,12,17]],"date-time":"2024-12-17T15:22:02Z","timestamp":1734448922000},"page":"199500","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Higher frequency of interstate over international transmission chains of SARS-CoV-2 virus at the Rio Grande do Sul - Brazil state borders"],"prefix":"10.1016","volume":"351","author":[{"given":"Filipe Zimmer","family":"Dezordi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jos\u00e9 Valter Joaquim Silva","family":"J\u00fanior","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Terimar Facin","family":"Ruoso","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Angela Giovana","family":"Batista","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pedro Mesquita","family":"Fonseca","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Larissa Paim","family":"Bernardo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard Steiner","family":"Salvato","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tatiana Sch\u00e4ffer","family":"Gregianini","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tha\u00edsa Regina Rocha","family":"Lopes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eduardo Furtado","family":"Flores","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rudi","family":"Weiblen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Patr\u00edcia Chaves","family":"Brites","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M\u00f4nica de Medeiros","family":"Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jo\u00e3o Batista Teixeira","family":"da Rocha","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gustavo de Lima","family":"Barbosa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lais Ceschini","family":"Machado","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexandre Freitas","family":"da Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marcelo Henrique Santos","family":"Paiva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matheus Filgueira","family":"Bezerra","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tulio de Lima","family":"Campos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tiago","family":"Gr\u00e4f","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel Angelo Sganzerla","family":"Graichen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elgion Lucio da Silva","family":"Loreto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1419-5713","authenticated-orcid":false,"given":"Gabriel da Luz","family":"Wallau","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.virusres.2024.199500_bib0001","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1080\/22221751.2021.2022440","article-title":"Omicron variant showed lower neutralizing sensitivity than other SARS-CoV-2 variants to immune sera elicited by vaccines after boost","volume":"11","author":"Ai","year":"2022","journal-title":"Emerg. Microbes Infect."},{"key":"10.1016\/j.virusres.2024.199500_bib0002","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.virusres.2024.199500_bib0003","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1186\/s13037-021-00291-9","article-title":"The safety of Covid-19 mRNA vaccines: a review","volume":"15","author":"Anand","year":"2021","journal-title":"Patient Saf. Surg."},{"key":"10.1016\/j.virusres.2024.199500_bib0004","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02641-21","article-title":"Emergence and Spread of the SARS-CoV-2 Variant of Concern Delta across Different Brazilian Regions","volume":"10","author":"Arantes","year":"2022","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.virusres.2024.199500_bib0005","doi-asserted-by":"crossref","first-page":"7003","DOI":"10.1038\/s41467-022-33713-y","article-title":"Global disparities in SARS-CoV-2 genomic surveillance","volume":"13","author":"Brito","year":"2022","journal-title":"Nat. Commun."},{"key":"10.1016\/j.virusres.2024.199500_bib0006","article-title":"Coronavirus disease 2019 (COVID-19)","year":"2020","journal-title":"Cent. Dis. Control Prev. URL"},{"key":"10.1016\/j.virusres.2024.199500_bib0007","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics."},{"key":"10.1016\/j.virusres.2024.199500_bib0008","unstructured":"COVID-19 Map. Johns Hopkins Coronavirus Resour. Cent. URL https:\/\/coronavirus.jhu.edu\/map.html (accessed 4.22.24)."},{"key":"10.1016\/j.virusres.2024.199500_bib0009","doi-asserted-by":"crossref","DOI":"10.1016\/j.virusres.2022.198907","article-title":"Genomic and epidemiologic surveillance of SARS-CoV-2 in Southern Brazil and identification of a new Omicron-L452R sublineage","volume":"321","author":"da Silva","year":"2022","journal-title":"Virus. Res."},{"key":"10.1016\/j.virusres.2024.199500_bib0010","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1038\/s41588-023-01368-0","article-title":"Maximum likelihood pandemic-scale phylogenetics","volume":"55","author":"De Maio","year":"2023","journal-title":"Nat. Genet."},{"key":"10.1016\/j.virusres.2024.199500_bib0011","doi-asserted-by":"crossref","first-page":"2939","DOI":"10.1016\/j.cell.2021.03.055","article-title":"Antibody evasion by the P.1 strain of SARS-CoV-2","volume":"184","author":"Dejnirattisai","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.virusres.2024.199500_bib0012","doi-asserted-by":"crossref","first-page":"217","DOI":"10.3390\/v14020217","article-title":"ViralFlow: a versatile automated workflow for SARS-CoV-2 genome assembly, lineage assignment, mutations and intrahost variant detection","volume":"14","author":"Dezordi","year":"2022","journal-title":"Viruses."},{"key":"10.1016\/j.virusres.2024.199500_bib0013","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1126\/science.abh2644","article-title":"Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil","volume":"372","author":"Faria","year":"2021","journal-title":"Science"},{"key":"10.1016\/j.virusres.2024.199500_bib0014","doi-asserted-by":"crossref","DOI":"10.1016\/j.micinf.2023.105216","article-title":"Intense P.1 (Gamma) diversification followed by rapid Delta substitution in Southern Brazil: a SARS-CoV-2 genomic epidemiology study","volume":"26","author":"Ferrareze","year":"2024","journal-title":"Microbes. Infect."},{"key":"10.1016\/j.virusres.2024.199500_bib0015","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1186\/s12864-021-07708-w","article-title":"Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil","volume":"22","author":"Franceschi","year":"2021","journal-title":"BMC. Genomics."},{"key":"10.1016\/j.virusres.2024.199500_bib0016","doi-asserted-by":"crossref","first-page":"988","DOI":"10.3390\/pathogens10080988","article-title":"Predominance of the SARS-CoV-2 Lineage P.1 and Its Sublineage P.1.2 in patients from the metropolitan region of porto alegre, Southern Brazil in March 2021","volume":"10","author":"Franceschi","year":"2021","journal-title":"Pathogens."},{"key":"10.1016\/j.virusres.2024.199500_bib0017","doi-asserted-by":"crossref","DOI":"10.1016\/j.virusres.2021.198345","article-title":"Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul, Brazil","volume":"296","author":"Francisco Jr","year":"2021","journal-title":"Virus. Res."},{"key":"10.1016\/j.virusres.2024.199500_bib0018","doi-asserted-by":"crossref","first-page":"veac024","DOI":"10.1093\/ve\/veac024","article-title":"Replacement of the Gamma by the Delta variant in Brazil: impact of lineage displacement on the ongoing pandemic","volume":"8","author":"Giovanetti","year":"2022","journal-title":"Virus. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0019","doi-asserted-by":"crossref","first-page":"1490","DOI":"10.1038\/s41564-022-01191-z","article-title":"Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil","volume":"7","author":"Giovanetti","year":"2022","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.virusres.2024.199500_bib0020","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1186\/s13059-018-1618-7","article-title":"An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar","volume":"20","author":"Grubaugh","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.virusres.2024.199500_bib0021","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0","volume":"59","author":"Guindon","year":"2010","journal-title":"Syst. Biol."},{"key":"10.1016\/j.virusres.2024.199500_bib0022","doi-asserted-by":"crossref","first-page":"1100","DOI":"10.1016\/j.it.2020.10.004","article-title":"Mechanisms of SARS-CoV-2 Transmission and Pathogenesis","volume":"41","author":"Harrison","year":"2020","journal-title":"Trends. Immunol."},{"key":"10.1016\/j.virusres.2024.199500_bib0023","doi-asserted-by":"crossref","first-page":"veac080","DOI":"10.1093\/ve\/veac080","article-title":"The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK","volume":"8","author":"Hill","year":"2022","journal-title":"Virus. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0024","doi-asserted-by":"crossref","first-page":"1038","DOI":"10.1016\/j.pt.2021.08.007","article-title":"Progress and challenges in virus genomic epidemiology","volume":"37","author":"Hill","year":"2021","journal-title":"Trends. Parasitol."},{"key":"10.1016\/j.virusres.2024.199500_bib0025","doi-asserted-by":"crossref","first-page":"2384","DOI":"10.1016\/j.cell.2021.03.036","article-title":"SARS-CoV-2 variants B.1.351 and P.1 escape from neutralizing antibodies","volume":"184","author":"Hoffmann","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.virusres.2024.199500_bib0026","doi-asserted-by":"crossref","first-page":"706","DOI":"10.1007\/s11427-020-1661-4","article-title":"Clinical characteristics of 24 asymptomatic infections with COVID-19 screened among close contacts in Nanjing","volume":"63","author":"Hu","year":"2020","journal-title":"China. Sci. China Life Sci."},{"key":"10.1016\/j.virusres.2024.199500_bib0027","doi-asserted-by":"crossref","first-page":"2906","DOI":"10.21105\/joss.02906","article-title":"Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens","volume":"6","author":"Huddleston","year":"2021","journal-title":"J. Open Source Softw."},{"key":"10.1016\/j.virusres.2024.199500_bib0028","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0239403","article-title":"Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR","volume":"15","author":"Itokawa","year":"2020","journal-title":"PLoS. One"},{"key":"10.1016\/j.virusres.2024.199500_bib0029","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nmeth.4285","article-title":"ModelFinder: fast model selection for accurate phylogenetic estimates","volume":"14","author":"Kalyaanamoorthy","year":"2017","journal-title":"Nat. Methods"},{"key":"10.1016\/j.virusres.2024.199500_bib0030","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0031","doi-asserted-by":"crossref","first-page":"1049","DOI":"10.46234\/ccdcw2021.255","article-title":"GISAID's role in pandemic response","volume":"3","author":"Khare","year":"2021","journal-title":"China CDC. Wkly."},{"key":"10.1016\/j.virusres.2024.199500_bib0032","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1093\/bioinformatics\/btl529","article-title":"Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation","volume":"23","author":"Letunic","year":"2007","journal-title":"Bioinforma. Oxf. Engl."},{"key":"10.1016\/j.virusres.2024.199500_bib0033","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with burrows\u2013wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics."},{"key":"10.1016\/j.virusres.2024.199500_bib0034","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2021.26.12.2100276","article-title":"Detection of SARS-CoV-2 lineage P.1 in patients from a region with exponentially increasing hospitalisation rate, February 2021, Rio Grande do Sul, Southern Brazil","volume":"26","author":"Martins","year":"2021","journal-title":"Eurosurveillance"},{"key":"10.1016\/j.virusres.2024.199500_bib0035","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.virol.2023.03.005","article-title":"Genomic characterization and molecular evolution of SARS-CoV-2 in Rio Grande do Sul State","volume":"582","author":"Mayer","year":"2023","journal-title":"Brazil. Virology"},{"key":"10.1016\/j.virusres.2024.199500_bib0036","doi-asserted-by":"crossref","first-page":"154","DOI":"10.1038\/s41586-022-05200-3","article-title":"Context-specific emergence and growth of the SARS-CoV-2 Delta variant","volume":"610","author":"McCrone","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.virusres.2024.199500_bib0037","doi-asserted-by":"crossref","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0038","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.653986","article-title":"Recurrent dissemination of SARS-CoV-2 Through the Uruguayan\u2013Brazilian border","volume":"12","author":"Mir","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.virusres.2024.199500_bib0039","doi-asserted-by":"crossref","DOI":"10.1080\/21645515.2022.2027160","article-title":"The efficacy and effectiveness of the COVID-19 vaccines in reducing infection, severity, hospitalization, and mortality: a systematic review","author":"Mohammed","year":"2022","journal-title":"Hum. Vaccines Immunother"},{"key":"10.1016\/j.virusres.2024.199500_bib0040","doi-asserted-by":"crossref","first-page":"1777","DOI":"10.1093\/molbev\/msaa314","article-title":"Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult","volume":"38","author":"Morel","year":"2021","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0041","doi-asserted-by":"crossref","first-page":"1230","DOI":"10.1038\/s41591-021-01378-7","article-title":"COVID-19 in Amazonas, Brazil, was driven by the persistence of endemic lineages and P.1 emergence","volume":"27","author":"Naveca","year":"2021","journal-title":"Nat. Med."},{"key":"10.1016\/j.virusres.2024.199500_bib0043","doi-asserted-by":"crossref","unstructured":"Nonaka, C.K.V., Franco, M.M., Gr\u00e4f, T., Barcia, C.A. de L., Mendon\u00e7a, R.N. de \u00c1., Sousa, K.A.F. de, Neiva, L.M.C., Fosenca, V., Mendes, A.V.A., Aguiar, R.S. de, Giovanetti, M., Souza, B.S. de F., 2021. Genomic Evidence of SARS-CoV-2 Reinfection Involving E484K Spike Mutation, Brazil - Volume 27, Number 5\u2014May 2021 - Emerging Infectious Diseases journal - CDC. https:\/\/doi.org\/10.3201\/eid2705.210191.","DOI":"10.3201\/eid2705.210191"},{"key":"10.1016\/j.virusres.2024.199500_bib0044","doi-asserted-by":"crossref","first-page":"veab064","DOI":"10.1093\/ve\/veab064","article-title":"Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool","volume":"7","author":"O'Toole","year":"2021","journal-title":"Virus. Evol."},{"key":"10.1016\/j.virusres.2024.199500_bib0045","doi-asserted-by":"crossref","unstructured":"Quick, J., 2020. nCoV-2019 sequencing protocol.","DOI":"10.17504\/protocols.io.bbmuik6w"},{"key":"10.1016\/j.virusres.2024.199500_bib0046","doi-asserted-by":"crossref","first-page":"vew007","DOI":"10.1093\/ve\/vew007","article-title":"Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)","volume":"2","author":"Rambaut","year":"2016","journal-title":"Virus. Evol."},{"issue":"11","key":"10.1016\/j.virusres.2024.199500_bib0047","doi-asserted-by":"crossref","first-page":"2957","DOI":"10.3201\/eid2711.211198","article-title":"Real-time genomic surveillance for SARS-CoV-2 variants of concern","volume":"27","author":"Rego","year":"2021","journal-title":"Uruguay. Emerg Infect Dis."},{"key":"10.1016\/j.virusres.2024.199500_bib0048","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1186\/s12879-024-09089-3","article-title":"Diversity of Omicron sublineages and clinical characteristics in hospitalized patients in the southernmost state of Brazil","volume":"24","author":"Rhoden","year":"2024","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.virusres.2024.199500_bib0049","doi-asserted-by":"crossref","first-page":"e481","DOI":"10.1016\/S2666-5247(21)00121-X","article-title":"Genomic surveillance to combat COVID-19: challenges and opportunities","volume":"2","author":"Robishaw","year":"2021","journal-title":"Lancet Microbe"},{"key":"10.1016\/j.virusres.2024.199500_bib0050","doi-asserted-by":"crossref","unstructured":"Sagulenko, P., Puller, V., Neher, R.A., 2018. TreeTime: maximum-likelihood phylodynamic analysis. Virus Evol. 4, vex042. https:\/\/doi.org\/10.1093\/ve\/vex042.","DOI":"10.1093\/ve\/vex042"},{"key":"10.1016\/j.virusres.2024.199500_bib0051","unstructured":"shiquan, 2024. shiquan\/bamdst."},{"key":"10.1016\/j.virusres.2024.199500_bib0052","doi-asserted-by":"crossref","DOI":"10.1101\/2023.02.17.529036","article-title":"Tracking and curating putative SARS-CoV-2 recombinants with RIVET","author":"Smith","year":"2023","journal-title":"Bioinformatics."},{"key":"10.1016\/j.virusres.2024.199500_bib0053","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1038\/s41586-021-03402-9","article-title":"Detection of a SARS-CoV-2 variant of concern in South Africa","volume":"592","author":"Tegally","year":"2021","journal-title":"Nature"},{"key":"10.1016\/j.virusres.2024.199500_bib0054","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1056\/NEJMoa2110362","article-title":"Effectiveness of Covid-19 vaccines in ambulatory and inpatient care settings","volume":"385","author":"Thompson Mark","year":"2021","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.virusres.2024.199500_bib0055","unstructured":"Tracking SARS-CoV-2 variants. https:\/\/www.who.int\/activities\/tracking-SARS-CoV-2-variants (accessed 4.22.24)."},{"key":"10.1016\/j.virusres.2024.199500_bib0056","unstructured":"Vaccines \u2013 COVID19 Vaccine Tracker. https:\/\/covid19.trackvaccines.org\/vaccines\/#approved (accessed 4.22.24)."},{"key":"10.1016\/j.virusres.2024.199500_bib0057","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1038\/s41586-022-04411-y","article-title":"Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa","volume":"603","author":"Viana","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.virusres.2024.199500_bib0058","unstructured":"WHO Director, General's opening remarks at the media briefing on COVID-19 - 11 March 2020 https:\/\/www.who.int\/director-general\/speeches\/detail\/who-director-general-s-opening-remarks-at-the-media-briefing-on-covid-19\u201411-march-2020 (accessed 4.22.24)."},{"key":"10.1016\/j.virusres.2024.199500_bib0060","first-page":"2938","article-title":"Introduction, Dispersal, and Predominance of SARS-CoV-2 Delta Variant in Rio Grande do Sul","volume":"11","author":"Y Castro","year":"2023","journal-title":"A Retrosp. Analy.. Microorgan."},{"key":"10.1016\/j.virusres.2024.199500_bib0061","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0241536","article-title":"Proportion of asymptomatic infection among COVID-19 positive persons and their transmission potential: a systematic review and meta-analysis","volume":"15","author":"Yanes-Lane","year":"2020","journal-title":"PLoS. One"}],"container-title":["Virus Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S016817022400193X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S016817022400193X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,14]],"date-time":"2026-05-14T03:38:14Z","timestamp":1778729894000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S016817022400193X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1]]},"references-count":59,"alternative-id":["S016817022400193X"],"URL":"https:\/\/doi.org\/10.1016\/j.virusres.2024.199500","relation":{},"ISSN":["0168-1702"],"issn-type":[{"value":"0168-1702","type":"print"}],"subject":[],"published":{"date-parts":[[2025,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Higher frequency of interstate over international transmission chains of SARS-CoV-2 virus at the Rio Grande do Sul - Brazil state borders","name":"articletitle","label":"Article Title"},{"value":"Virus Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.virusres.2024.199500","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Author(s). Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"199500"}}