{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T02:44:22Z","timestamp":1793241862470,"version":"4.5.0"},"reference-count":54,"publisher":"Elsevier BV","issue":"20","license":[{"start":{"date-parts":[[2005,12,1]],"date-time":"2005-12-01T00:00:00Z","timestamp":1133395200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Water Research"],"published-print":{"date-parts":[[2005,12]]},"DOI":"10.1016\/j.watres.2005.10.006","type":"journal-article","created":{"date-parts":[[2005,11,22]],"date-time":"2005-11-22T12:31:07Z","timestamp":1132662667000},"page":"4979-4992","source":"Crossref","is-referenced-by-count":113,"title":["Nitrobacter and Nitrospira genera as representatives of nitrite-oxidizing bacteria: Detection, quantification and growth along the lower Seine River (France)"],"prefix":"10.1016","volume":"39","author":[{"given":"Aur\u00e9lie","family":"C\u00e9bron","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Josette","family":"Garnier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.watres.2005.10.006_bib1","doi-asserted-by":"crossref","first-page":"2352","DOI":"10.1128\/AEM.62.7.2352-2355.1996","article-title":"Monoclonal antibodies recognizing nitrite oxidoreductase of Nitrobacter hamburgensis, N. winogradskyi, and N. vulgaris","volume":"62","author":"Aamand","year":"1996","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib2","doi-asserted-by":"crossref","first-page":"798","DOI":"10.1046\/j.1469-2920.2003.00469.x","article-title":"In situ distribution and activity of nitrifying bacteria in freshwater sediment","volume":"5","author":"Altmann","year":"2003","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib3","doi-asserted-by":"crossref","first-page":"4126","DOI":"10.1128\/AEM.65.9.4126-4133.1999","article-title":"Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase","volume":"65","author":"Bartosch","year":"1999","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib4","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1007\/s00248-001-0037-5","article-title":"Immunological detection of Nitrospira-like bacteria in various soils","volume":"43","author":"Bartosch","year":"2002","journal-title":"Microbial. Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib5","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1016\/S0764-4469(99)80102-4","article-title":"Quantification de bact\u00e9ries nitrifiantes du genre Nitrobacter en milieux aquatiques (l\u2019estuaire de la Seine, France)","volume":"322","author":"Berthe","year":"1999","journal-title":"C. R. Acad. Sci Paris Sci. Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib6","doi-asserted-by":"crossref","first-page":"197","DOI":"10.3354\/meps103197","article-title":"Bacterial nitrification and denitrification rates in the Rh\u00f4ne River plume (northwestern Mediterranean Sea)","volume":"103","author":"Bianchi","year":"1994","journal-title":"Mar. Ecol. Prog. Ser."},{"key":"10.1016\/j.watres.2005.10.006_bib7","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/0043-1354(76)90157-3","article-title":"Evaluation of nitrifying activity in sediments by dark 14C-bicarbonate incorporation","volume":"10","author":"Billen","year":"1976","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib8","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1023\/A:1003838116725","article-title":"Nitrogen transfers through the Seine drainage network: a budget based on the application of the Riverstrahler model","volume":"410","author":"Billen","year":"1999","journal-title":"Hydrobiologia"},{"key":"10.1016\/j.watres.2005.10.006_bib9","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1016\/S0167-7012(02)00077-5","article-title":"Enummerating ammonia-oxidizing bacteria in environmental samples using competitive PCR","volume":"51","author":"Bjerrum","year":"2002","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.watres.2005.10.006_bib10","series-title":"The Prokaryotes","first-page":"2302","article-title":"The genus Nitrobacter and related genera","author":"Bock","year":"1992"},{"key":"10.1016\/j.watres.2005.10.006_bib11","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1007\/BF00247805","article-title":"A new facultatively nitrite-oxidizing bacterium, Nitrobacter vulgaris sp. nov","volume":"153","author":"Bock","year":"1990","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib12","first-page":"99","article-title":"Temporal and spatial variation in the nitrite-oxidizing bacterial community of a grassland soil","volume":"101","author":"Both","year":"1992","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib13","first-page":"283","article-title":"Une r\u00e9\u00e9valuation de la m\u00e9thode d\u2019incorporation de H14CO3\u2212 pour mesurer la nitrification autotrophe et son application pour estimer des biomasses de bact\u00e9ries nitrifiantes","volume":"11","author":"Brion","year":"1998","journal-title":"Rev. Sci. Eau."},{"key":"10.1016\/j.watres.2005.10.006_bib14","doi-asserted-by":"crossref","first-page":"3213","DOI":"10.1016\/S0043-1354(00)00075-0","article-title":"Wastewater as a source of nitrifying bacteria in river systems: the case of the river Seine downstream from Paris","volume":"34","author":"Brion","year":"2000","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib15","doi-asserted-by":"crossref","first-page":"669","DOI":"10.2307\/1352893","article-title":"Distribution of nitrifying activity in the Seine River (France) from Paris to the estuary","volume":"23","author":"Brion","year":"2000","journal-title":"Estuaries"},{"key":"10.1016\/j.watres.2005.10.006_bib16","doi-asserted-by":"crossref","first-page":"1878","DOI":"10.1128\/AEM.64.5.1878-1883.1998","article-title":"Microbiology of a nitrite-oxidizing bioreactor","volume":"64","author":"Burrell","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib17","doi-asserted-by":"crossref","first-page":"7091","DOI":"10.1128\/AEM.69.12.7091-7100.2003","article-title":"Nitrification and nitrifying bacteria in the lower Seine River and estuary (France)","volume":"69","author":"C\u00e9bron","year":"2003","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib18","doi-asserted-by":"crossref","first-page":"6726","DOI":"10.1128\/AEM.70.11.6726-6737.2004","article-title":"DGGE analysis of the ammonia oxidizing bacterial community structure in the lower Seine River: impact of the Paris wastewater effluents","volume":"70","author":"C\u00e9bron","year":"2004","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib19","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1016\/0043-1354(83)90079-9","article-title":"Isolation of Nitrobacter from sewage and drinking water","volume":"17","author":"Chartrain","year":"1983","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib20","doi-asserted-by":"crossref","first-page":"956","DOI":"10.1128\/AEM.66.3.956-965.2000","article-title":"Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input","volume":"66","author":"Cho","year":"2000","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib21","doi-asserted-by":"crossref","first-page":"5273","DOI":"10.1128\/AEM.67.11.5273-5284.2001","article-title":"In situ characterisation of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants","volume":"67","author":"Daims","year":"2001","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib22","doi-asserted-by":"crossref","first-page":"2093","DOI":"10.1128\/AEM.61.6.2093-2098.1995","article-title":"Detection and counting of Nitrobacter populations in soil by PCR","volume":"61","author":"Degrange","year":"1995","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib23","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1111\/j.1574-6941.1997.tb00433.x","article-title":"Activity, size and structure of a Nitrobacter community as affected by organic carbon and nitrite in sterile soil","volume":"24","author":"Degrange","year":"1998","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib24","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1128\/AEM.68.1.245-253.2002","article-title":"Quantification of Nitrosomonas oligotropha-like ammonia-oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR","volume":"68","author":"Dionisi","year":"2002","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib25","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1007\/BF02568729","article-title":"A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship","volume":"164","author":"Ehrich","year":"1995","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib26","doi-asserted-by":"crossref","first-page":"964","DOI":"10.2307\/1353010","article-title":"The oxygen budget in the Seine estuary: balance between photosynthesis and degradation of organic matter","volume":"24","author":"Garnier","year":"2001","journal-title":"Estuaries"},{"key":"10.1016\/j.watres.2005.10.006_bib27","unstructured":"Garnier, J., Billen, G., Berthe, T., Martinez, A., Pinault, S., Desruelle, M., C\u00e9bron, A., 2002. Nitrification de l\u2019ammonium dans la basse Seine: impact de l\u2019anthropisation de Paris \u00e0 l\u2019estuaire. Rapport de Synth\u00e8se 1998-2001, PIREN-Seine programme, 20p. http:\/\/www.sisyphe.jussieu.fr\/internet\/piren\/"},{"key":"10.1016\/j.watres.2005.10.006_bib28","unstructured":"Garnier, J., C\u00e9bron, A., Tallec, G., Billen, G., Sebilo, M., Martinez, A., in press. Nitrous oxide emission in the Seine River estuary (France): comparison with upstream sector of the Seine basin. Biogeochemistry, in press."},{"key":"10.1016\/j.watres.2005.10.006_bib29","doi-asserted-by":"crossref","first-page":"1351","DOI":"10.1128\/AEM.67.3.1351-1362.2001","article-title":"Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm","volume":"67","author":"Gieseke","year":"2001","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib30","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1046\/j.1462-2920.2003.00423.x","article-title":"Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm","volume":"5","author":"Gieseke","year":"2003","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib31","doi-asserted-by":"crossref","first-page":"4543","DOI":"10.1128\/AEM.66.10.4543-4546.2000","article-title":"Microscale diversity of the genus Nitrobacter in soil on the basis of analysis of genes encoding rRNA","volume":"66","author":"Grundmann","year":"2000","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib32","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1128\/AEM.64.1.258-264.1998","article-title":"Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria","volume":"64","author":"Hovanec","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib33","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1007\/BF02013526","article-title":"Isolation from soils of Nitrobacter and evidence for novel serotypes using immunofluorescence","volume":"5","author":"Josserand","year":"1979","journal-title":"Microbial Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib34","doi-asserted-by":"crossref","first-page":"3042","DOI":"10.1128\/AEM.64.8.3042-3051.1998","article-title":"Combined molecular and conventional analysis of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations","volume":"64","author":"Juretschko","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib35","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1007\/BF00492908","article-title":"Steady state and transient state growth of autotrophic nitrifying bacteria","volume":"147","author":"Keen","year":"1987","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib36","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1574-6941.2001.tb00847.x","article-title":"Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species","volume":"37","author":"Koops","year":"2001","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.watres.2005.10.006_bib37","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1016\/S0167-7012(02)00231-2","article-title":"Use of polyclonal antibodies to detect and quantify the NOR protein of nitrite oxidizers in complex environments","volume":"53","author":"Maron","year":"2003","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.watres.2005.10.006_bib38","doi-asserted-by":"crossref","first-page":"1057","DOI":"10.1016\/0043-1354(95)00262-6","article-title":"Changes in Nitrobacter serotypes biodiversity in a river: impact of a wastewater treatment plant discharge","volume":"30","author":"Montuelle","year":"1996","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib39","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1099\/00207713-42-4-554","article-title":"Genomic heterogeneity of the genus Nitrobacter","volume":"42","author":"Navarro","year":"1992","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.watres.2005.10.006_bib40","doi-asserted-by":"crossref","first-page":"3182","DOI":"10.1128\/AEM.65.7.3182-3191.1999","article-title":"In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes","volume":"65","author":"Okabe","year":"1999","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib41","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1016\/0043-1354(70)90051-5","article-title":"A review of literature on inorganic nitrogen metabolism in microorganisms","volume":"4","author":"Painter","year":"1970","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib42","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1016\/S0043-1354(02)00237-3","article-title":"Diversity of nitrifying bacteria in full-scale chloraminated distribution systems","volume":"37","author":"Regan","year":"2003","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib43","unstructured":"Rodier, J., 1984. In: Dunod (Ed.), L\u2019analyse de l\u2019eau (eaux naturelles, eaux r\u00e9siduaires, eau de mer), seventh ed, Paris, 1364pp."},{"key":"10.1016\/j.watres.2005.10.006_bib44","doi-asserted-by":"crossref","first-page":"4704","DOI":"10.1128\/AEM.63.12.4704-4712.1997","article-title":"The ammonia mono-oxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations","volume":"63","author":"Rotthauwe","year":"1997","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib45","doi-asserted-by":"crossref","first-page":"3480","DOI":"10.1128\/AEM.64.9.3480-3485.1998","article-title":"Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor","volume":"64","author":"Schramm","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib46","doi-asserted-by":"crossref","first-page":"3690","DOI":"10.1128\/AEM.65.8.3690-3696.1999","article-title":"Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors","volume":"65","author":"Schramm","year":"1999","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib47","unstructured":"Sebilo, M., 2003. Utilisation du tra\u00e7age isotopique naturel pour caract\u00e9riser et quantifier les processus de nitrification et d\u00e9nitrification \u00e0 l\u2019\u00e9chelle du r\u00e9seau hydrographique de la Seine. Th\u00e8se Doct., University Paris 6, 124pp"},{"key":"10.1016\/j.watres.2005.10.006_bib48","doi-asserted-by":"crossref","first-page":"3521","DOI":"10.1016\/S0043-1354(99)00056-1","article-title":"Supply of organic matter and bacteria to aquatic ecosystems through waste water effluents","volume":"33","author":"Servais","year":"1999","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2005.10.006_bib49","first-page":"1","article-title":"Comparison of two automated ammonium methods in a region of coastal upwelling","volume":"19","author":"Slavyck","year":"1972","journal-title":"Deep-Sea Res."},{"key":"10.1016\/j.watres.2005.10.006_bib50","doi-asserted-by":"crossref","first-page":"828","DOI":"10.1139\/m91-143","article-title":"Numbers, activities and diversity of autotrophic ammonia-oxidizing bacteria in a freshwater, eutrophic lake sediment","volume":"37","author":"Smorczewski","year":"1991","journal-title":"Can. J. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib51","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1128\/AEM.65.1.95-101.1999","article-title":"Effect of toxic metals on indigenous soil b-subgroup Proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria","volume":"65","author":"Stephen","year":"1999","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib52","doi-asserted-by":"crossref","first-page":"237","DOI":"10.2166\/wst.1996.0377","article-title":"In situ analysis of nitrifying bacteria in sewage treatment plants","volume":"34","author":"Wagner","year":"1996","journal-title":"Water Sci. Technol."},{"key":"10.1016\/j.watres.2005.10.006_bib53","doi-asserted-by":"crossref","first-page":"169","DOI":"10.2323\/jgam.28.169","article-title":"Growth kinetic studies of nitrifying bacteria by the immunofluorescent counting method","volume":"28","author":"Yoshioka","year":"1982","journal-title":"J. Gen. Appl. Microbiol."},{"key":"10.1016\/j.watres.2005.10.006_bib54","doi-asserted-by":"crossref","first-page":"2017","DOI":"10.1093\/nar\/21.8.2017","article-title":"Absolute quantification of target DNA: a simple competitive PCR for efficient analysis of multiple samples","volume":"21","author":"Zacchar","year":"1993","journal-title":"Nucl. Acid Res."}],"container-title":["Water Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135405005774?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135405005774?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,4,11]],"date-time":"2020-04-11T03:21:03Z","timestamp":1586575263000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0043135405005774"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,12]]},"references-count":54,"journal-issue":{"issue":"20","published-print":{"date-parts":[[2005,12]]}},"alternative-id":["S0043135405005774"],"URL":"https:\/\/doi.org\/10.1016\/j.watres.2005.10.006","relation":{},"ISSN":["0043-1354"],"issn-type":[{"value":"0043-1354","type":"print"}],"subject":[],"published":{"date-parts":[[2005,12]]}}}