{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,19]],"date-time":"2026-08-19T19:44:42Z","timestamp":1787168682337,"version":"build-2736575974"},"reference-count":63,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,11,7]],"date-time":"2023-11-07T00:00:00Z","timestamp":1699315200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["JP18K18881"],"award-info":[{"award-number":["JP18K18881"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["JP19H02274"],"award-info":[{"award-number":["JP19H02274"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Water Research"],"published-print":{"date-parts":[[2024,1]]},"DOI":"10.1016\/j.watres.2023.120830","type":"journal-article","created":{"date-parts":[[2023,11,3]],"date-time":"2023-11-03T18:23:01Z","timestamp":1699035781000},"page":"120830","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":28,"special_numbering":"C","title":["Genomic surveillance of antimicrobial-resistant Escherichia coli in fecal sludge and sewage in Uganda"],"prefix":"10.1016","volume":"248","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3299-333X","authenticated-orcid":false,"given":"Ryota","family":"Gomi","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yasufumi","family":"Matsumura","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7822-3269","authenticated-orcid":false,"given":"Masaki","family":"Yamamoto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mai","family":"Tanaka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Allan John","family":"Komakech","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tomonari","family":"Matsuda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7685-7751","authenticated-orcid":false,"given":"Hidenori","family":"Harada","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"6478","key":"10.1016\/j.watres.2023.120830_bib0001","doi-asserted-by":"crossref","first-page":"630","DOI":"10.1126\/science.aba3432","article-title":"Using sewage for surveillance of antimicrobial resistance","volume":"367","author":"Aarestrup","year":"2020","journal-title":"Science"},{"key":"10.1016\/j.watres.2023.120830_bib0002","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1016\/j.mib.2021.09.011","article-title":"The potential of using E. coli as an indicator for the surveillance of antimicrobial resistance (AMR) in the environment","volume":"64","author":"Anjum","year":"2021","journal-title":"Curr. Opin. Microbiol."},{"issue":"6","key":"10.1016\/j.watres.2023.120830_bib0003","doi-asserted-by":"crossref","first-page":"1692","DOI":"10.1128\/JCM.03049-12","article-title":"Molecular characterization of extraintestinal Escherichia coli isolates in Japan: relationship between sequence types and mutation patterns of quinolone resistance-determining regions analyzed by pyrosequencing","volume":"51","author":"Aoike","year":"2013","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.watres.2023.120830_bib0004","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/1471-2164-9-75","article-title":"The RAST server: rapid annotations using subsystems technology","volume":"9","author":"Aziz","year":"2008","journal-title":"BMC Genom."},{"issue":"7","key":"10.1016\/j.watres.2023.120830_bib0005","article-title":"ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping","volume":"4","author":"Beghain","year":"2018","journal-title":"Microb. Genom."},{"issue":"5","key":"10.1016\/j.watres.2023.120830_bib0006","doi-asserted-by":"crossref","first-page":"3074","DOI":"10.1021\/acs.est.6b06019","article-title":"Safely managed sanitation for all means fecal sludge management for at least 1.8 billion people in low and middle income countries","volume":"51","author":"Berendes","year":"2017","journal-title":"Environ. Sci. Technol."},{"issue":"8","key":"10.1016\/j.watres.2023.120830_bib0007","doi-asserted-by":"crossref","first-page":"2145","DOI":"10.1093\/jac\/dkx146","article-title":"Global epidemiology of CTX-M beta-lactamases: temporal and geographical shifts in genotype","volume":"72","author":"Bevan","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"issue":"12","key":"10.1016\/j.watres.2023.120830_bib0008","doi-asserted-by":"crossref","first-page":"3491","DOI":"10.1093\/jac\/dkaa345","article-title":"ResFinder 4.0 for predictions of phenotypes from genotypes","volume":"75","author":"Bortolaia","year":"2020","journal-title":"J. Antimicrob. Chemother."},{"issue":"12","key":"10.1016\/j.watres.2023.120830_bib0009","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1021\/acs.estlett.0c00610","article-title":"Analysis of fecal sludges reveals common enteric pathogens in urban Maputo, Mozambique","volume":"7","author":"Capone","year":"2020","journal-title":"Environ. Sci. Technol. Lett."},{"issue":"7","key":"10.1016\/j.watres.2023.120830_bib0010","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"17","key":"10.1016\/j.watres.2023.120830_bib0011","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.watres.2023.120830_bib0012","article-title":"Advancing the use of fecal sludge for timelier and better-quality epidemiological data in low- and middle-income countries for pandemic prevention","author":"Chigwechokha","year":"2022","journal-title":"Environ. Sci. Technol."},{"issue":"12","key":"10.1016\/j.watres.2023.120830_bib0013","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.3390\/antibiotics10121547","article-title":"Pan-Resistome Characterization of Uropathogenic Escherichia coli and Klebsiella pneumoniae Strains Circulating in Uganda and Kenya, Isolated from 2017-2018","volume":"10","author":"Decano","year":"2021","journal-title":"Antibiotics (Basel)"},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0014","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1038\/s41579-020-0416-x","article-title":"The population genetics of pathogenic Escherichia coli","volume":"19","author":"Denamur","year":"2021","journal-title":"Nat. Rev. Microbiol."},{"issue":"17","key":"10.1016\/j.watres.2023.120830_bib0015","doi-asserted-by":"crossref","first-page":"2877","DOI":"10.1093\/bioinformatics\/btv271","article-title":"kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome","volume":"31","author":"Gardner","year":"2015","journal-title":"Bioinformatics"},{"issue":"11","key":"10.1016\/j.watres.2023.120830_bib0016","doi-asserted-by":"crossref","first-page":"6800","DOI":"10.1021\/acs.est.5b00953","article-title":"Characterization of pathogenic Escherichia coli in river water by simultaneous detection and sequencing of 14 virulence genes","volume":"49","author":"Gomi","year":"2015","journal-title":"Environ. Sci. Technol."},{"issue":"9","key":"10.1016\/j.watres.2023.120830_bib0017","doi-asserted-by":"crossref","first-page":"e00564","DOI":"10.1128\/AAC.00564-17","article-title":"Occurrence of clinically important lineages, including the sequence Type 131 C1-M27 subclone, among extended-spectrum-beta-lactamase-producing Escherichia coli in wastewater","volume":"61","author":"Gomi","year":"2017","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.watres.2023.120830_bib0018","article-title":"Chromosomal integration of blaCTX-M genes in diverse Escherichia coli isolates recovered from river water in Japan","volume":"3","author":"Gomi","year":"2022","journal-title":"Curr. Res. Microb. Sci."},{"issue":"7","key":"10.1016\/j.watres.2023.120830_bib0019","doi-asserted-by":"crossref","first-page":"860","DOI":"10.3390\/antibiotics10070860","article-title":"Analysis of wastewater reveals the spread of diverse extended-spectrum beta-lactamase-producing E. coli strains in uMgungundlovu district, South Africa","volume":"10","author":"Gumede","year":"2021","journal-title":"Antibiotics (Basel)"},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0020","doi-asserted-by":"crossref","first-page":"1124","DOI":"10.1038\/s41467-019-08853-3","article-title":"Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage","volume":"10","author":"Hendriksen","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.watres.2023.120830_bib0021","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2020.114200","article-title":"Surveillance of antibiotic resistant Escherichia coli in human populations through urban wastewater in ten European countries","volume":"261","author":"Huijbers","year":"2020","journal-title":"Environ. Pollut."},{"issue":"37","key":"10.1016\/j.watres.2023.120830_bib0022","doi-asserted-by":"crossref","first-page":"1800497","DOI":"10.2807\/1560-7917.ES.2019.24.37.1800497","article-title":"Population-level surveillance of antibiotic resistance in Escherichia coli through sewage analysis","volume":"24","author":"Hutinel","year":"2019","journal-title":"Euro Surveill"},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0023","doi-asserted-by":"crossref","first-page":"5114","DOI":"10.1038\/s41467-018-07641-9","article-title":"High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries","volume":"9","author":"Jain","year":"2018","journal-title":"Nat. Commun."},{"issue":"5","key":"10.1016\/j.watres.2023.120830_bib0024","doi-asserted-by":"crossref","first-page":"1501","DOI":"10.1128\/JCM.03617-13","article-title":"Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli","volume":"52","author":"Joensen","year":"2014","journal-title":"J. Clin. Microbiol."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0025","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1086\/315217","article-title":"Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise","volume":"181","author":"Johnson","year":"2000","journal-title":"J. Infect. Dis."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0026","doi-asserted-by":"crossref","first-page":"e01913","DOI":"10.1128\/AAC.01913-18","article-title":"Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an Emerging multidrug-resistant clonal group","volume":"63","author":"Johnson","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0027","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1186\/s12879-020-05186-1","article-title":"Biofilm formation, antimicrobial susceptibility and virulence genes of Uropathogenic Escherichia coli isolated from clinical isolates in Uganda","volume":"20","author":"Katongole","year":"2020","journal-title":"BMC Infect. Dis."},{"issue":"8","key":"10.1016\/j.watres.2023.120830_bib0028","doi-asserted-by":"crossref","first-page":"642","DOI":"10.1016\/j.ijmm.2011.09.006","article-title":"What defines extraintestinal pathogenic Escherichia coli?","volume":"301","author":"Kohler","year":"2011","journal-title":"Int. J. Med. Microbiol."},{"issue":"5","key":"10.1016\/j.watres.2023.120830_bib0029","doi-asserted-by":"crossref","first-page":"540","DOI":"10.1038\/s41587-019-0072-8","article-title":"Assembly of long, error-prone reads using repeat graphs","volume":"37","author":"Kolmogorov","year":"2019","journal-title":"Nat. Biotechnol."},{"issue":"2","key":"10.1016\/j.watres.2023.120830_bib0030","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1007\/s13593-013-0164-7","article-title":"Maps of animal urban agriculture in Kampala city","volume":"34","author":"Komakech","year":"2014","journal-title":"Agron. Sustain. Dev."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0031","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/j.ijantimicag.2014.09.016","article-title":"Surveillance of antimicrobial resistance among Escherichia coli in wastewater in Stockholm during 1 year: does it reflect the resistance trends in the society?","volume":"45","author":"Kwak","year":"2015","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"4","key":"10.1016\/j.watres.2023.120830_bib0032","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1038\/s41579-022-00835-5","article-title":"Sewage surveillance of antibiotic resistance holds both opportunities and challenges","volume":"21","author":"Larsson","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.watres.2023.120830_bib0033","doi-asserted-by":"crossref","first-page":"13739","DOI":"10.1007\/s13762-023-04907-8","article-title":"Occurrence and removal of antibiotic resistant Escherichia coli and antibiotic resistance genes in an urban wastewater treatment plant","volume":"20","author":"Le","year":"2023","journal-title":"Int. J. Environ. Sci."},{"key":"10.1016\/j.watres.2023.120830_bib0034","doi-asserted-by":"crossref","first-page":"4713","DOI":"10.2147\/IDR.S290835","article-title":"Antimicrobial stewardship: fighting antimicrobial resistance and protecting global public health","volume":"13","author":"Majumder","year":"2020","journal-title":"Infect. Drug Resist."},{"issue":"10","key":"10.1016\/j.watres.2023.120830_bib0035","doi-asserted-by":"crossref","first-page":"e01269","DOI":"10.1128\/JCM.01269-20","article-title":"In Silico genotyping of Escherichia coli isolates for extraintestinal virulence genes by use of whole-genome sequencing data","volume":"58","author":"Malberg Tetzschner","year":"2020","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.watres.2023.120830_bib0036","first-page":"1040","article-title":"Population structure of Japanese extraintestinal pathogenic Escherichia coli and its relationship with antimicrobial resistance","volume":"72","author":"Matsumura","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"issue":"8","key":"10.1016\/j.watres.2023.120830_bib0037","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00179-17","article-title":"Rapid Identification of different Escherichia coli sequence type 131 clades","volume":"61","author":"Matsumura","year":"2017","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.watres.2023.120830_bib0038","doi-asserted-by":"crossref","first-page":"2973","DOI":"10.1093\/jac\/dky296","article-title":"Emergence of ESBL-producing Escherichia coli ST131-C1-M27 clade colonizing patients in Europe","volume":"73","author":"Merino","year":"2018","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.watres.2023.120830_bib0039","author":"Milenkov"},{"issue":"10","key":"10.1016\/j.watres.2023.120830_bib0040","doi-asserted-by":"crossref","first-page":"e29954","DOI":"10.2196\/29954","article-title":"Implementation of the World Health Organization Global antimicrobial resistance surveillance system in Uganda, 2015-2020: mixed-methods study using national surveillance data","volume":"7","author":"Nabadda","year":"2021","journal-title":"JMIR Public Health Surveill."},{"key":"10.1016\/j.watres.2023.120830_bib0041","doi-asserted-by":"crossref","DOI":"10.1155\/2020\/8042540","article-title":"Prevalence of Escherichia Coli and its antimicrobial susceptibility profiles among patients with UTI at Mulago hospital, Kampala, Uganda","volume":"2020","author":"Odongo","year":"2020","journal-title":"Interdiscip. Perspect. Infect. Dis."},{"key":"10.1016\/j.watres.2023.120830_bib0042","doi-asserted-by":"crossref","DOI":"10.1016\/j.meegid.2020.104265","article-title":"The evolutionary puzzle of Escherichia coli ST131","volume":"81","author":"Pitout","year":"2020","journal-title":"Infect. Genet. Evol."},{"issue":"7","key":"10.1016\/j.watres.2023.120830_bib0043","doi-asserted-by":"crossref","DOI":"10.1128\/aac.00511-22","article-title":"Escherichia coli ST1193: following in the footsteps of E. coli ST131","volume":"66","author":"Pitout","year":"2022","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.watres.2023.120830_bib0044","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.ARBA-0026-2017","article-title":"Antimicrobial resistance in Escherichia coli","volume":"6","author":"Poirel","year":"2018","journal-title":"Microbiol Spectr"},{"issue":"5","key":"10.1016\/j.watres.2023.120830_bib0045","article-title":"Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes","volume":"5","author":"Raven","year":"2019","journal-title":"Microb. Genom."},{"issue":"3","key":"10.1016\/j.watres.2023.120830_bib0046","article-title":"Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny","volume":"5","author":"Reid","year":"2019","journal-title":"Microb. Genom."},{"issue":"12","key":"10.1016\/j.watres.2023.120830_bib0047","article-title":"Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26","volume":"3","author":"Reid","year":"2017","journal-title":"Microb. Genom."},{"issue":"8","key":"10.1016\/j.watres.2023.120830_bib0048","doi-asserted-by":"crossref","first-page":"2538","DOI":"10.1128\/JCM.00737-17","article-title":"Development of a web tool for Escherichia coli subtyping based on fimH Alleles","volume":"55","author":"Roer","year":"2017","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.watres.2023.120830_bib0049","doi-asserted-by":"crossref","first-page":"D32","DOI":"10.1093\/nar\/gkj014","article-title":"ISfinder: the reference centre for bacterial insertion sequences","volume":"34","author":"Siguier","year":"2006","journal-title":"Nucleic Acids Res."},{"issue":"2","key":"10.1016\/j.watres.2023.120830_bib0050","doi-asserted-by":"crossref","first-page":"e02162","DOI":"10.1128\/mBio.02162-15","article-title":"Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131","volume":"7","author":"Stoesser","year":"2016","journal-title":"mBio"},{"issue":"3","key":"10.1016\/j.watres.2023.120830_bib0051","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/nrmicro2298","article-title":"The population genetics of commensal Escherichia coli","volume":"8","author":"Tenaillon","year":"2010","journal-title":"Nat. Rev. Microbiol."},{"issue":"11","key":"10.1016\/j.watres.2023.120830_bib0052","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1186\/s13059-014-0524-x","article-title":"The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes","volume":"15","author":"Treangen","year":"2014","journal-title":"Genome Biol."},{"issue":"2","key":"10.1016\/j.watres.2023.120830_bib0053","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1093\/jac\/dky417","article-title":"Quantifying the contribution of four resistance mechanisms to ciprofloxacin MIC in Escherichia coli: a systematic review","volume":"74","author":"van der Putten","year":"2019","journal-title":"J. Antimicrob. Chemother."},{"issue":"9","key":"10.1016\/j.watres.2023.120830_bib0054","doi-asserted-by":"crossref","DOI":"10.1128\/MRA.00046-19","article-title":"Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775","volume":"8","author":"Wadley","year":"2019","journal-title":"Microbiol. Resour. Announc."},{"issue":"9","key":"10.1016\/j.watres.2023.120830_bib0055","doi-asserted-by":"crossref","DOI":"10.1099\/acmi.0.000143","article-title":"Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool","volume":"2","author":"Waters","year":"2020","journal-title":"Access Microbiol."},{"key":"10.1016\/j.watres.2023.120830_bib0056","unstructured":"WHO 2015. Global action plan on antimicrobial resistance."},{"key":"10.1016\/j.watres.2023.120830_bib0057","unstructured":"WHO 2021. WHO integrated global surveillance on ESBL-producing E. coli using a \u201cOne Health\u201d approach: implementation and opportunities."},{"key":"10.1016\/j.watres.2023.120830_bib0058","unstructured":"WHO 2022. Global antimicrobial resistance and use surveillance system (GLASS) report: 2022."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0059","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1009802","article-title":"Polypolish: Short-read polishing of long-read bacterial genome assemblies","volume":"18","author":"Wick","year":"2022","journal-title":"PLoS Comput. Biol."},{"issue":"6","key":"10.1016\/j.watres.2023.120830_bib0060","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput. Biol."},{"issue":"6","key":"10.1016\/j.watres.2023.120830_bib0061","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02554-22","article-title":"Global phylogeny and F virulence plasmid carriage in pandemic Escherichia coli ST1193","volume":"10","author":"Wyrsch","year":"2022","journal-title":"Microbiol. Spectr."},{"issue":"1","key":"10.1016\/j.watres.2023.120830_bib0062","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1101\/gr.251678.119","article-title":"The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity","volume":"30","author":"Zhou","year":"2020","journal-title":"Genome Res."},{"issue":"6","key":"10.1016\/j.watres.2023.120830_bib0063","doi-asserted-by":"crossref","first-page":"843","DOI":"10.3390\/microorganisms8060843","article-title":"Whole genome sequencing analysis of porcine faecal commensal Escherichia coli carrying class 1 integrons from sows and their offspring","volume":"8","author":"Zingali","year":"2020","journal-title":"Microorganisms"}],"container-title":["Water Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135423012708?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135423012708?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T04:45:18Z","timestamp":1758602718000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0043135423012708"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1]]},"references-count":63,"alternative-id":["S0043135423012708"],"URL":"https:\/\/doi.org\/10.1016\/j.watres.2023.120830","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2023.05.17.540885","asserted-by":"object"}]},"ISSN":["0043-1354"],"issn-type":[{"value":"0043-1354","type":"print"}],"subject":[],"published":{"date-parts":[[2024,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic surveillance of antimicrobial-resistant Escherichia coli in fecal sludge and sewage in Uganda","name":"articletitle","label":"Article Title"},{"value":"Water Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.watres.2023.120830","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023 The Authors. Published by Elsevier Ltd.","name":"copyright","label":"Copyright"}],"article-number":"120830"}}