{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,8]],"date-time":"2026-09-08T03:31:12Z","timestamp":1788838272361,"version":"build-2803163510"},"reference-count":68,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["52470218"],"award-info":[{"award-number":["52470218"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["52100217"],"award-info":[{"award-number":["52100217"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Water Research"],"published-print":{"date-parts":[[2025,8]]},"DOI":"10.1016\/j.watres.2025.123607","type":"journal-article","created":{"date-parts":[[2025,4,8]],"date-time":"2025-04-08T04:26:33Z","timestamp":1744086393000},"page":"123607","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"special_numbering":"C","title":["New perspectives on bacterial chlorine resistance: Phages encoding chlorine resistance genes improve bacterial adaptation"],"prefix":"10.1016","volume":"282","author":[{"given":"Jia","family":"Wang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yibo","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiyue","family":"Meng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ziyu","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jie","family":"Fu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2595-5669","authenticated-orcid":false,"given":"Chenyuan","family":"Dang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"11","key":"10.1016\/j.watres.2025.123607_bib0001","doi-asserted-by":"crossref","first-page":"1144","DOI":"10.1038\/nmeth.3103","article-title":"Binning metagenomic contigs by coverage and composition","volume":"11","author":"Alneberg","year":"2014","journal-title":"Nat. Methods"},{"key":"10.1016\/j.watres.2025.123607_bib0002","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2020.123034","article-title":"Influence of treatment processes and disinfectants on bacterial community compositions and opportunistic pathogens in a full-scale recycled water distribution system","volume":"274","author":"Bal Krishna","year":"2020","journal-title":"J. Clean. Prod."},{"key":"10.1016\/j.watres.2025.123607_bib0003","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/j.freeradbiomed.2016.12.004","article-title":"New tools for redox biology: from imaging to manipulation","volume":"109","author":"Bilan","year":"2017","journal-title":"Free Radic. Biol. Med."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0004","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1186\/1471-2105-8-209","article-title":"CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats","volume":"8","author":"Bland","year":"2007","journal-title":"BMC Bioinform."},{"issue":"6","key":"10.1016\/j.watres.2025.123607_bib0005","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.1093\/bioinformatics\/btz848","article-title":"GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database","volume":"36","author":"Chaumeil","year":"2020","journal-title":"Bioinformatics"},{"issue":"6","key":"10.1016\/j.watres.2025.123607_bib0006","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2008731118","article-title":"Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes","volume":"118","author":"Che","year":"2021","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"12","key":"10.1016\/j.watres.2025.123607_bib0007","doi-asserted-by":"crossref","first-page":"2577","DOI":"10.1101\/gr.1295503","article-title":"Comparative genome analysis of vibrio vulnificus, a marine pathogen","volume":"13","author":"Chen","year":"2003","journal-title":"Genome Res."},{"key":"10.1016\/j.watres.2025.123607_bib0008","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2023.120611","article-title":"Metagenomic analysis unveils the underexplored roles of prokaryotic viruses in a full-scale landfill leachate treatment plant","volume":"245","author":"Chen","year":"2023","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2025.123607_bib0009","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2024.109313","article-title":"Interactive dynamics between rhizosphere bacterial and viral communities facilitate soybean fitness to cadmium stress revealed by time-series metagenomics","volume":"190","author":"Cheng","year":"2024","journal-title":"Soil Biol. Biochem."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0010","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1038\/s41579-021-00602-y","article-title":"Interactions between bacterial and phage communities in natural environments","volume":"20","author":"Chevallereau","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"issue":"8","key":"10.1016\/j.watres.2025.123607_bib0011","doi-asserted-by":"crossref","first-page":"1203","DOI":"10.1038\/s41592-023-01940-w","article-title":"CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning","volume":"20","author":"Chklovski","year":"2023","journal-title":"Nat. Methods"},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0012","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1186\/s40168-023-01666-z","article-title":"Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem","volume":"11","author":"Coclet","year":"2023","journal-title":"Microbiome"},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0013","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1021\/envhealth.3c00057","article-title":"Environmental issues caused by high-dose disinfection need urgent attention","volume":"1","author":"Dang","year":"2023","journal-title":"Environ. Health"},{"key":"10.1016\/j.watres.2025.123607_bib0014","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2023.120453","article-title":"Effect of chlorine disinfectant influx on biological sewage treatment process under the COVID-19 pandemic: performance, mechanisms and implications","volume":"244","author":"Dang","year":"2023","journal-title":"Water Res."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0015","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.tim.2018.08.006","article-title":"Molecular and evolutionary determinants of bacteriophage host range","volume":"27","author":"de Jonge","year":"2019","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.watres.2025.123607_bib0016","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1016\/j.watres.2019.05.014","article-title":"Ozone disinfection of chlorine-resistant bacteria in drinking water","volume":"160","author":"Ding","year":"2019","journal-title":"Water Res."},{"issue":"8","key":"10.1016\/j.watres.2025.123607_bib0017","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1038\/s41564-018-0190-y","article-title":"Host-linked soil viral ecology along a permafrost thaw gradient","volume":"3","author":"Emerson","year":"2018","journal-title":"Nat. Microbiol."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0018","doi-asserted-by":"crossref","first-page":"234","DOI":"10.1186\/s40168-023-01672-1","article-title":"Global diversity and biogeography of DNA viral communities in activated sludge systems","volume":"11","author":"Fan","year":"2023","journal-title":"Microbiome"},{"key":"10.1016\/j.watres.2025.123607_bib0019","doi-asserted-by":"crossref","first-page":"1481","DOI":"10.1016\/j.scitotenv.2018.06.284","article-title":"Removal of anti-inflammatory\/analgesic pharmaceuticals from urban wastewater in a pilot-scale A2O system: linking performance and microbial population dynamics to operating variables","volume":"643","author":"Gallardo-Altamirano","year":"2018","journal-title":"Sci. Total Environ."},{"issue":"11","key":"10.1016\/j.watres.2025.123607_bib0020","doi-asserted-by":"crossref","first-page":"1022","DOI":"10.1016\/j.tim.2022.07.011","article-title":"Does phage-mediated horizontal gene transfer represent an environmental risk?","volume":"30","author":"Gonz\u00e1lez-Villalobos","year":"2022","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.watres.2025.123607_bib0021","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1016\/j.neuropharm.2016.03.013","article-title":"Kynurenine pathway metabolites and enzymes involved in redox reactions","volume":"112","author":"Gonz\u00e1lez Esquivel","year":"2017","journal-title":"Neuropharmacology"},{"issue":"8","key":"10.1016\/j.watres.2025.123607_bib0022","doi-asserted-by":"crossref","first-page":"2053","DOI":"10.1016\/j.cell.2021.02.052","article-title":"Elevated rates of horizontal gene transfer in the industrialized human microbiome","volume":"184","author":"Groussin","year":"2021","journal-title":"Cell"},{"issue":"18","key":"10.1016\/j.watres.2025.123607_bib0023","doi-asserted-by":"crossref","first-page":"2334","DOI":"10.1093\/bioinformatics\/btq413","article-title":"genoPlotR: comparative gene and genome visualization in R","volume":"26","author":"Guy","year":"2010","journal-title":"Bioinformatics"},{"issue":"4","key":"10.1016\/j.watres.2025.123607_bib0024","doi-asserted-by":"crossref","first-page":"881","DOI":"10.1038\/s41396-019-0580-z","article-title":"Phage-specific metabolic reprogramming of virocells","volume":"14","author":"Howard-Varona","year":"2020","journal-title":"ISMe J."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0025","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1038\/s43705-023-00249-1","article-title":"The association of prokaryotic antiviral systems and symbiotic phage communities in drinking water microbiomes","volume":"3","author":"Huang","year":"2023","journal-title":"ISMe Commun."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0026","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: prokaryotic gene recognition and translation initiation site identification","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinform."},{"issue":"5","key":"10.1016\/j.watres.2025.123607_bib0027","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1038\/s41579-022-00811-z","article-title":"Soil viral diversity, ecology and climate change","volume":"21","author":"Jansson","year":"2023","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.watres.2025.123607_bib0028","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2020.115721","article-title":"Metagenomic profiling of antibiotic resistance genes and their associations with bacterial community during multiple disinfection regimes in a full-scale drinking water treatment plant","volume":"176","author":"Jia","year":"2020","journal-title":"Water Res."},{"issue":"8","key":"10.1016\/j.watres.2025.123607_bib0029","doi-asserted-by":"crossref","DOI":"10.3390\/v12080800","article-title":"Genome analysis of two novel synechococcus phages that lack common auxiliary metabolic genes: possible reasons and ecological insights by comparative analysis of cyanomyoviruses","volume":"12","author":"Jiang","year":"2020","journal-title":"Viruses"},{"issue":"4","key":"10.1016\/j.watres.2025.123607_bib0030","doi-asserted-by":"crossref","first-page":"726","DOI":"10.1016\/j.jmb.2015.11.006","article-title":"BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences","volume":"428","author":"Kanehisa","year":"2016","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.watres.2025.123607_bib0031","doi-asserted-by":"crossref","first-page":"e7359","DOI":"10.7717\/peerj.7359","article-title":"MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies","volume":"7","author":"Kang","year":"2019","journal-title":"PeerJ"},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0032","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1186\/s40168-019-0752-0","article-title":"Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics","volume":"7","author":"Kavagutti","year":"2019","journal-title":"Microbiome"},{"issue":"24","key":"10.1016\/j.watres.2025.123607_bib0033","doi-asserted-by":"crossref","first-page":"3211","DOI":"10.1093\/bioinformatics\/bts611","article-title":"SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data","volume":"28","author":"Kopylova","year":"2012","journal-title":"Bioinformatics"},{"issue":"6","key":"10.1016\/j.watres.2025.123607_bib0034","doi-asserted-by":"crossref","first-page":"916","DOI":"10.1038\/s41396-023-01404-1","article-title":"Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting","volume":"17","author":"Liao","year":"2023","journal-title":"ISMe J."},{"key":"10.1016\/j.watres.2025.123607_bib0035","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2023.119709","article-title":"Microbial density-dependent viral dynamics and low activity of temperate phages in the activated sludge process","volume":"232","author":"Liu","year":"2023","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2025.123607_bib0036","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2020.116474","article-title":"Evaluating method and potential risks of chlorine-resistant bacteria (CRB): a review","volume":"188","author":"Luo","year":"2021","journal-title":"Water Res."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0037","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1186\/s40168-022-01384-y","article-title":"Viral community-wide auxiliary metabolic genes differ by lifestyles, habitats, and hosts","volume":"10","author":"Luo","year":"2022","journal-title":"Microbiome"},{"issue":"12","key":"10.1016\/j.watres.2025.123607_bib0038","doi-asserted-by":"crossref","first-page":"3079","DOI":"10.1038\/s41396-020-00739-3","article-title":"Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline","volume":"14","author":"Mara","year":"2020","journal-title":"ISMe J."},{"issue":"9","key":"10.1016\/j.watres.2025.123607_bib0039","doi-asserted-by":"crossref","DOI":"10.1038\/nmicrobiol.2017.112","article-title":"Bacteriophage evolution differs by host, lifestyle and genome","volume":"2","author":"Mavrich","year":"2017","journal-title":"Nat. Microbiol."},{"issue":"12","key":"10.1016\/j.watres.2025.123607_bib0040","doi-asserted-by":"crossref","first-page":"e121","DOI":"10.1093\/nar\/gkt263","article-title":"Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions","volume":"41","author":"Mistry","year":"2013","journal-title":"Nucleic Acids Res."},{"issue":"5","key":"10.1016\/j.watres.2025.123607_bib0041","doi-asserted-by":"crossref","first-page":"578","DOI":"10.1038\/s41587-020-00774-7","article-title":"CheckV assesses the quality and completeness of metagenome-assembled viral genomes","volume":"39","author":"Nayfach","year":"2021","journal-title":"Nat. Biotechnol."},{"issue":"12","key":"10.1016\/j.watres.2025.123607_bib0042","doi-asserted-by":"crossref","first-page":"2864","DOI":"10.1038\/ismej.2017.126","article-title":"dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication","volume":"11","author":"Olm","year":"2017","journal-title":"ISMe J."},{"issue":"7","key":"10.1016\/j.watres.2025.123607_bib0043","doi-asserted-by":"crossref","first-page":"1779","DOI":"10.1038\/s41396-018-0083-3","article-title":"Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox nitrospira","volume":"12","author":"Palomo","year":"2018","journal-title":"ISMe J."},{"issue":"7","key":"10.1016\/j.watres.2025.123607_bib0044","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1101\/gr.186072.114","article-title":"CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes","volume":"25","author":"Parks","year":"2015","journal-title":"Genome Res."},{"issue":"11","key":"10.1016\/j.watres.2025.123607_bib0045","doi-asserted-by":"crossref","first-page":"1533","DOI":"10.1038\/s41564-017-0012-7","article-title":"Recovery of nearly 8000 metagenome-assembled genomes substantially expands the tree of life","volume":"2","author":"Parks","year":"2017","journal-title":"Nat. Microbiol."},{"issue":"14","key":"10.1016\/j.watres.2025.123607_bib0046","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0047","doi-asserted-by":"crossref","first-page":"bbac487","DOI":"10.1093\/bib\/bbac487","article-title":"PhaTYP: predicting the lifestyle for bacteriophages using BERT","volume":"24","author":"Shang","year":"2023","journal-title":"Br. Bioinform."},{"key":"10.1016\/j.watres.2025.123607_bib0048","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2022.118237","article-title":"A mixed blessing of viruses in wastewater treatment plants","volume":"215","author":"Shi","year":"2022","journal-title":"Water Res."},{"issue":"12","key":"10.1016\/j.watres.2025.123607_bib0049","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1038\/s41579-022-00755-4","article-title":"Mutualistic interplay between bacteriophages and bacteria in the human gut","volume":"20","author":"Shkoporov","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"issue":"6487","key":"10.1016\/j.watres.2025.123607_bib0050","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1126\/science.abb8905","article-title":"Disinfection threatens aquatic ecosystems","volume":"368","author":"Sills","year":"2020","journal-title":"Science"},{"issue":"45","key":"10.1016\/j.watres.2025.123607_bib0051","doi-asserted-by":"crossref","first-page":"17324","DOI":"10.1021\/acs.est.3c05452","article-title":"Enhanced bacterium\u2013Phage symbiosis in attached microbial aggregates on a membrane surface facing elevated hydraulic stress","volume":"57","author":"Tan","year":"2023","journal-title":"Environ. Sci. Technol."},{"issue":"7","key":"10.1016\/j.watres.2025.123607_bib0052","doi-asserted-by":"crossref","first-page":"1104","DOI":"10.1038\/s41396-023-01425-w","article-title":"Lysogenic bacteriophages encoding arsenic resistance determinants promote bacterial community adaptation to arsenic toxicity","volume":"17","author":"Tang","year":"2023","journal-title":"ISMe J."},{"key":"10.1016\/j.watres.2025.123607_bib0053","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2021.110897","article-title":"Disinfectant resistance in bacteria: mechanisms, spread, and resolution strategies","volume":"195","author":"Tong","year":"2021","journal-title":"Environ. Res."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0054","doi-asserted-by":"crossref","first-page":"158","DOI":"10.1186\/s40168-018-0541-1","article-title":"MetaWRAP\u2014A flexible pipeline for genome-resolved metagenomic data analysis","volume":"6","author":"Uritskiy","year":"2018","journal-title":"Microbiome"},{"key":"10.1016\/j.watres.2025.123607_bib0055","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2021.117606","article-title":"Risks, characteristics, and control strategies of disinfection-residual-bacteria (DRB) from the perspective of microbial community structure","volume":"204","author":"Wang","year":"2021","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2025.123607_bib0056","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1016\/j.biortech.2019.02.047","article-title":"Effects of beneficial microorganisms on nutrient removal and excess sludge production in an anaerobic-anoxic\/oxic (A2O) process for municipal wastewater treatment","volume":"281","author":"Wang","year":"2019","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.watres.2025.123607_bib0057","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.168310","article-title":"Metagenomic analysis of antibiotic-resistance genes and viruses released from glaciers into downstream habitats","volume":"908","author":"Wang","year":"2024","journal-title":"Sci. Total Environ."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0058","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1128\/MMBR.00034-09","article-title":"Trade-offs between competition and defense specialists among unicellular planktonic organisms: the \"killing the winner\" hypothesis revisited","volume":"74","author":"Winter","year":"2010","journal-title":"Microbiol. Mol. Biol. Rev."},{"issue":"10","key":"10.1016\/j.watres.2025.123607_bib0059","doi-asserted-by":"crossref","first-page":"1262","DOI":"10.1038\/s41564-020-0755-4","article-title":"Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome","volume":"5","author":"Wolf","year":"2020","journal-title":"Nat. Microbiol."},{"issue":"4","key":"10.1016\/j.watres.2025.123607_bib0060","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1093\/bioinformatics\/btv638","article-title":"MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets","volume":"32","author":"Wu","year":"2016","journal-title":"Bioinformatics"},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0061","doi-asserted-by":"crossref","first-page":"3228","DOI":"10.1038\/s41467-024-47600-1","article-title":"Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments","volume":"15","author":"Yu","year":"2024","journal-title":"Nat. Commun."},{"issue":"13","key":"10.1016\/j.watres.2025.123607_bib0062","doi-asserted-by":"crossref","first-page":"5485","DOI":"10.1021\/acs.est.2c07800","article-title":"Potential auxiliary metabolic capabilities and activities reveal biochemical impacts of viruses in municipal wastewater treatment plants","volume":"57","author":"Yuan","year":"2023","journal-title":"Environ. Sci. Technol."},{"issue":"5","key":"10.1016\/j.watres.2025.123607_bib0063","doi-asserted-by":"crossref","first-page":"2346","DOI":"10.1021\/acs.est.3c07664","article-title":"Viral communities contribute more to the lysis of antibiotic-resistant bacteria than the transduction of antibiotic resistance genes in Anaerobic digestion revealed by metagenomics","volume":"58","author":"Zhang","year":"2024","journal-title":"Environ. Sci. Technol."},{"issue":"3","key":"10.1016\/j.watres.2025.123607_bib0064","doi-asserted-by":"crossref","DOI":"10.1002\/imt2.188","article-title":"A panoramic view of the virosphere in three wastewater treatment plants by integrating viral-like particle-concentrated and traditional non-concentrated metagenomic approaches","volume":"3","author":"Zhang","year":"2024","journal-title":"iMeta"},{"issue":"10","key":"10.1016\/j.watres.2025.123607_bib0065","doi-asserted-by":"crossref","first-page":"2969","DOI":"10.1038\/s41396-021-00980-4","article-title":"Chlorine disinfection facilitates natural transformation through ROS-mediated oxidative stress","volume":"15","author":"Zhang","year":"2021","journal-title":"ISMe J."},{"issue":"5","key":"10.1016\/j.watres.2025.123607_bib0066","doi-asserted-by":"crossref","first-page":"1397","DOI":"10.1038\/s41396-022-01188-w","article-title":"Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes","volume":"16","author":"Zheng","year":"2022","journal-title":"ISMe J."},{"issue":"1","key":"10.1016\/j.watres.2025.123607_bib0067","doi-asserted-by":"crossref","DOI":"10.1128\/aem.01517-24","article-title":"Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants","volume":"91","author":"Zhong","year":"2024","journal-title":"Appl. Environ. Microbiol."},{"issue":"3","key":"10.1016\/j.watres.2025.123607_bib0068","doi-asserted-by":"crossref","DOI":"10.1128\/msystems.00246-20","article-title":"Viral ecogenomics of arctic cryopeg brine and sea ice","volume":"5","author":"Zhong","year":"2020","journal-title":"mSystems"}],"container-title":["Water Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425005184?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425005184?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,12,25]],"date-time":"2025-12-25T09:32:15Z","timestamp":1766655135000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0043135425005184"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,8]]},"references-count":68,"alternative-id":["S0043135425005184"],"URL":"https:\/\/doi.org\/10.1016\/j.watres.2025.123607","relation":{},"ISSN":["0043-1354"],"issn-type":[{"value":"0043-1354","type":"print"}],"subject":[],"published":{"date-parts":[[2025,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"New perspectives on bacterial chlorine resistance: Phages encoding chlorine resistance genes improve bacterial adaptation","name":"articletitle","label":"Article Title"},{"value":"Water Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.watres.2025.123607","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"123607"}}