{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,12]],"date-time":"2026-10-12T16:49:30Z","timestamp":1791823770239,"version":"4.3.4"},"reference-count":70,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100005906","name":"Chinese Academy of Fishery Sciences","doi-asserted-by":"publisher","award":["2024HY-ZC004"],"award-info":[{"award-number":["2024HY-ZC004"]}],"id":[{"id":"10.13039\/501100005906","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012428","name":"Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012428","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["ZDYF2023XDNY176"],"award-info":[{"award-number":["ZDYF2023XDNY176"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Water Research"],"published-print":{"date-parts":[[2025,7]]},"DOI":"10.1016\/j.watres.2025.123726","type":"journal-article","created":{"date-parts":[[2025,4,26]],"date-time":"2025-04-26T14:32:41Z","timestamp":1745677961000},"page":"123726","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":20,"special_numbering":"C","title":["Coupled nitrogen and phosphorus cycles mediated by coordinated variations of functional microbes in industrial recirculating aquaculture system"],"prefix":"10.1016","volume":"280","author":[{"given":"Shenqun","family":"An","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiaxi","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jinyu","family":"Du","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Feng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lianbo","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaohua","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhong","family":"Zhuang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zelong","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-8045-5685","authenticated-orcid":false,"given":"Guang","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.watres.2025.123726_bib0001","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2021.126604","article-title":"Recirculating aquaculture systems (RAS): environmental solution and climate change adaptation","volume":"297","author":"Ahmed","year":"2021","journal-title":"J. Clean. Prod."},{"issue":"1","key":"10.1016\/j.watres.2025.123726_bib0002","first-page":"17","article-title":"A review on recirculating aquaculture systems: challenges and opportunities for sustainable aquaculture","volume":"5","author":"Aich","year":"2020","journal-title":"Innov. Farm."},{"issue":"20","key":"10.1016\/j.watres.2025.123726_bib0003","doi-asserted-by":"crossref","first-page":"4592","DOI":"10.1128\/JB.00698-13","article-title":"Nitrite reductase NirBD is induced and plays an important role during in vitro dormancy of mycobacterium tuberculosis","volume":"195","author":"Akhtar","year":"2013","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.watres.2025.123726_bib0004","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2023.739595","article-title":"Differential sensitivity of mucosal organs to transient exposure to hydrogen sulphide in post-smolt Atlantic salmon (Salmo salar)","volume":"573","author":"Alipio","year":"2023","journal-title":"Aquaculture"},{"key":"10.1016\/j.watres.2025.123726_bib0005","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2022.135736","article-title":"Reclaimed water use improved polluted water's self-purification capacity \u2013evidenced by water quality factors and bacterial community structure","volume":"386","author":"An","year":"2023","journal-title":"J. Clean. Prod."},{"key":"10.1016\/j.watres.2025.123726_bib0006","doi-asserted-by":"crossref","DOI":"10.1016\/j.chemosphere.2022.137555","article-title":"Decoupling of N and P aggravated upward along food chains in an urban river ecosystemS","volume":"313","author":"An","year":"2023","journal-title":"Chemosphere"},{"key":"10.1016\/j.watres.2025.123726_bib0007","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2022.738997","article-title":"Nitrogen and phosphorus turnover and coupling in ponds with different aquaculture species","volume":"563","author":"Bai","year":"2023","journal-title":"Aquaculture"},{"key":"10.1016\/j.watres.2025.123726_bib0008","doi-asserted-by":"crossref","first-page":"101","DOI":"10.3389\/fmicb.2017.00101","article-title":"Freshwater recirculating aquaculture system operations drive biofilter bacterial community shifts around a stable nitrifying consortium of ammonia-oxidizing archaea and comammox Nitrospira","volume":"8","author":"Bartelme","year":"2017","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.watres.2025.123726_bib0009","series-title":"Proceedings of the International AAAI Conference on Weblogs and Social Media","article-title":"Gephi: an open source software for exploring and manipulating networks","author":"Bastian","year":"2009"},{"key":"10.1016\/j.watres.2025.123726_bib0010","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/j.bej.2013.03.004","article-title":"Phosphorus removal in a closed recirculating aquaculture system using the cyanobacterium Synechocystis sp. PCC 6803 strain lacking the SphU regulator of the Pho regulon","volume":"74","author":"Burut-Archanai","year":"2013","journal-title":"Biochem. Eng. J."},{"key":"10.1016\/j.watres.2025.123726_bib0011","series-title":"BBMap: A Fast, Accurate, Splice-Aware Aligner (No. LBNL-7065E)","author":"Bushnell","year":"2014"},{"issue":"4","key":"10.1016\/j.watres.2025.123726_bib0012","doi-asserted-by":"crossref","first-page":"1169","DOI":"10.1111\/are.15685","article-title":"Perspectives for improving circular economy in brackish shrimp aquaculture","volume":"53","author":"Carvalho Pereira","year":"2022","journal-title":"Aquac. Res."},{"key":"10.1016\/j.watres.2025.123726_bib0013","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.1093\/bioinformatics\/btz848","article-title":"GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database","volume":"36","author":"Chaumeil","year":"2020","journal-title":"Bioinformatics"},{"key":"10.1016\/j.watres.2025.123726_bib0014","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1007\/s11802-018-3584-9","article-title":"Nitrogen budget in recirculating aquaculture and water exchange systems for culturing Litopenaeus vannamei","volume":"17","author":"Chen","year":"2018","journal-title":"J. Ocean Univ. China"},{"key":"10.1016\/j.watres.2025.123726_bib0015","doi-asserted-by":"crossref","DOI":"10.1111\/raq.12912","article-title":"Nitrogen cycling process and application in different prawn culture modes","author":"Chen","year":"2024","journal-title":"Rev. Aquac."},{"issue":"2","key":"10.1016\/j.watres.2025.123726_bib0016","doi-asserted-by":"crossref","first-page":"878","DOI":"10.1111\/raq.12354","article-title":"Nitrite implications and its management strategies in aquaculture: a review","volume":"12","author":"Ciji","year":"2020","journal-title":"Rev. Aquac."},{"key":"10.1016\/j.watres.2025.123726_bib0017","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1016\/j.watres.2017.01.006","article-title":"Non-denitrifying polyphosphate accumulating organisms obviate requirement for anaerobic condition","volume":"111","author":"Cokro","year":"2017","journal-title":"Water Res."},{"key":"10.1016\/j.watres.2025.123726_bib0018","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.aquaeng.2017.08.003","article-title":"Evaluating the chronic effects of nitrate on the health and performance of post-smolt Atlantic salmon Salmo salar in freshwater recirculation aquaculture systems","volume":"79","author":"Davidson","year":"2017","journal-title":"Aquac. Eng."},{"issue":"6","key":"10.1016\/j.watres.2025.123726_bib0019","doi-asserted-by":"crossref","first-page":"927","DOI":"10.1111\/j.1654-1103.2003.tb02228.x","article-title":"VEGAN, a package of R functions for community ecology","volume":"14","author":"Dixon","year":"2003","journal-title":"J. Veg. Sci."},{"key":"10.1016\/j.watres.2025.123726_bib0020","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.735268","article-title":"Effects of reduced organic matter loading through membrane filtration on the microbial community dynamics in recirculating aquaculture systems (RAS) with Atlantic salmon parr (Salmo salar)","volume":"524","author":"Fossmark","year":"2020","journal-title":"Aquaculture"},{"issue":"23","key":"10.1016\/j.watres.2025.123726_bib0021","doi-asserted-by":"crossref","first-page":"3150","DOI":"10.1093\/bioinformatics\/bts565","article-title":"CD-HIT: accelerated for clustering the next-generation sequencing data","volume":"28","author":"Fu","year":"2012","journal-title":"Bioinformatics"},{"key":"10.1016\/j.watres.2025.123726_bib0022","doi-asserted-by":"crossref","unstructured":"Gemayel, K., Lomsadze, A., Borodovsky, M., 2022. MetaGeneMark-2: improved gene prediction in metagenomes. bioRxiv 2022-07.","DOI":"10.1101\/2022.07.25.500264"},{"key":"10.1016\/j.watres.2025.123726_bib0023","doi-asserted-by":"crossref","first-page":"1541","DOI":"10.1007\/s10499-018-0303-x","article-title":"Waste management in recirculating aquaculture system through bacteria dissimilation and plant assimilation","volume":"26","author":"Gichana","year":"2018","journal-title":"Aquac. Int."},{"issue":"12","key":"10.1016\/j.watres.2025.123726_bib0024","doi-asserted-by":"crossref","first-page":"598","DOI":"10.3390\/w8120598","article-title":"The development of sustainable saltwater-based food production systems: a review of established and novel concepts","volume":"8","author":"Gunning","year":"2016","journal-title":"Water"},{"key":"10.1016\/j.watres.2025.123726_bib0025","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-016-2465-0","article-title":"Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers","volume":"17","author":"Helen","year":"2016","journal-title":"BMC Genom."},{"key":"10.1016\/j.watres.2025.123726_bib0026","unstructured":"Huang, H., 2021. linkET: everything is linkable. R package version 0.0.2.2."},{"key":"10.1016\/j.watres.2025.123726_bib0027","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: prokaryotic gene recognition and translation initiation site identification","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinform."},{"key":"10.1016\/j.watres.2025.123726_bib0028","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.aquaeng.2016.10.006","article-title":"Impact of temperature on ammonium and nitrite removal rates in RAS moving bed biofilters","volume":"75","author":"Kinyage","year":"2016","journal-title":"Aquac. Eng."},{"issue":"3","key":"10.1016\/j.watres.2025.123726_bib0029","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1080\/13657305.2015.994240","article-title":"Fish to 2030: the role and opportunity for aquaculture","volume":"19","author":"Kobayashi","year":"2015","journal-title":"Aquac. Econ. Manag."},{"key":"10.1016\/j.watres.2025.123726_bib0030","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.116452","article-title":"Highly effective reduction of phosphate and harmful bacterial community in shrimp wastewater using short-term biological treatment with immobilized engineering microalgae","volume":"325","author":"Krasaesueb","year":"2023","journal-title":"J. Environ. Manag."},{"key":"10.1016\/j.watres.2025.123726_bib0031","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaeng.2020.102096","article-title":"Activated sludge denitrification in marine recirculating aquaculture system effluent using external and internal carbon sources","volume":"90","author":"Letelier-Gordo","year":"2020","journal-title":"Aquac. Eng."},{"issue":"10","key":"10.1016\/j.watres.2025.123726_bib0032","doi-asserted-by":"crossref","first-page":"1674","DOI":"10.1093\/bioinformatics\/btv033","article-title":"MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph","volume":"31","author":"Li","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.watres.2025.123726_bib0033","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2023.739399","article-title":"Hazardous substances and their removal in recirculating aquaculture systems: a review","volume":"569","author":"Li","year":"2023","journal-title":"Aquaculture"},{"issue":"1","key":"10.1016\/j.watres.2025.123726_bib0034","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1007\/s00253-024-13046-0","article-title":"Profile of the gut microbiota of Pacific white shrimp under industrial indoor farming system","volume":"108","author":"Li","year":"2024","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"5","key":"10.1016\/j.watres.2025.123726_bib0035","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2118122119","article-title":"A widely distributed phosphate-insensitive phosphatase presents a route for rapid organophosphorus remineralization in the biosphere","volume":"119","author":"Lidbury","year":"2022","journal-title":"Proc. Natl. Acad. Sci. USA"},{"issue":"3","key":"10.1016\/j.watres.2025.123726_bib0036","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/msystems.00162-20","article-title":"Soil carbon, nitrogen, and phosphorus cycling microbial populations and their resistance to global change depend on soil C: N: P stoichiometry","volume":"5","author":"Luo","year":"2020","journal-title":"mSystems"},{"key":"10.1016\/j.watres.2025.123726_bib0037","series-title":"Rhizosphere Microbes. Microorganisms for Sustainability","doi-asserted-by":"crossref","DOI":"10.1007\/978-981-15-9154-9_7","article-title":"Microbial transformation of nutrients in soil: an overview","volume":"23","author":"Mahala","year":"2020"},{"key":"10.1016\/j.watres.2025.123726_bib0038","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2023.1114647","article-title":"Temperature dependence of nitrification in a membrane-aerated biofilm reactor","volume":"14","author":"N\u00e9meth","year":"2023","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.watres.2025.123726_bib0039","doi-asserted-by":"crossref","DOI":"10.3389\/fsufs.2023.1287034","article-title":"Shrimp industry in China: overview of the trends in the production, imports and exports during the last two decades, challenges, and outlook","volume":"7","author":"N\u2019Souvi","year":"2024","journal-title":"Front. Sustain. Food Syst."},{"issue":"11","key":"10.1016\/j.watres.2025.123726_bib0040","doi-asserted-by":"crossref","DOI":"10.1128\/mra.00882-22","article-title":"Whole-genome sequence of Sediminibacterium sp. strain TEGAF015, isolated from a shallow eutrophic freshwater lake in Japan","volume":"11","author":"Ogata","year":"2022","journal-title":"Microbiol. Resour. Announc."},{"key":"10.1016\/j.watres.2025.123726_bib0041","doi-asserted-by":"crossref","first-page":"2864","DOI":"10.1038\/ismej.2017.126","article-title":"dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication","volume":"11","author":"Olm","year":"2017","journal-title":"ISME J."},{"issue":"2","key":"10.1016\/j.watres.2025.123726_bib0042","doi-asserted-by":"crossref","first-page":"666","DOI":"10.1099\/ijsem.0.000772","article-title":"Marivivens donghaensis gen. nov., sp. nov., isolated from seawater","volume":"66","author":"Park","year":"2016","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.watres.2025.123726_bib0043","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1101\/gr.186072.114","article-title":"CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes","volume":"25","author":"Parks","year":"2015","journal-title":"Genome Res."},{"issue":"2","key":"10.1016\/j.watres.2025.123726_bib0044","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0030619","article-title":"NGS QC Toolkit: a toolkit for quality control of next generation sequencing data","volume":"7","author":"Patel","year":"2012","journal-title":"PLoS ONE"},{"key":"10.1016\/j.watres.2025.123726_bib0045","series-title":"Current Trends in Microbial Biotechnology for Sustainable Agriculture. Environmental and Microbial Biotechnology","article-title":"Soil microbiomes for healthy nutrient recycling","author":"Prasad","year":"2021"},{"key":"10.1016\/j.watres.2025.123726_bib0046","series-title":"R: A Language and Environment for Statistical Computing","year":"2022"},{"key":"10.1016\/j.watres.2025.123726_bib0047","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2019.734480","article-title":"Comparison of active biofilm carriers and commercially available inoculum for activation of biofilters in marine recirculating aquaculture systems (RAS)","volume":"514","author":"Roalkvam","year":"2020","journal-title":"Aquaculture"},{"issue":"3","key":"10.1016\/j.watres.2025.123726_bib0048","doi-asserted-by":"crossref","first-page":"1478","DOI":"10.1111\/raq.12392","article-title":"Overview and future perspectives of nitrifying bacteria on biofilters for recirculating aquaculture systems","volume":"12","author":"Ruiz","year":"2020","journal-title":"Rev. Aquac."},{"issue":"4","key":"10.1016\/j.watres.2025.123726_bib0049","doi-asserted-by":"crossref","first-page":"3775","DOI":"10.1007\/s13762-023-05226-8","article-title":"Enhanced chemical recovery of phosphorus from residues of recirculating aquaculture systems (RAS)","volume":"21","author":"Schleyken","year":"2024","journal-title":"Int. J. Environ. Sci. Technol."},{"issue":"5","key":"10.1016\/j.watres.2025.123726_bib0050","doi-asserted-by":"crossref","DOI":"10.1002\/ecy.3003","article-title":"Interactions of nitrogen and phosphorus cycling promote P acquisition and explain synergistic plant-growth responses","volume":"101","author":"Schleuss","year":"2020","journal-title":"Ecology"},{"issue":"15","key":"10.1016\/j.watres.2025.123726_bib0051","doi-asserted-by":"crossref","first-page":"10345","DOI":"10.1074\/jbc.M114.555177","article-title":"Nitrite reductase and nitric-oxide synthase activity of the mitochondrial molybdopterin enzymes mARC1 and mARC2","volume":"289","author":"Sparacino-Watkins","year":"2014","journal-title":"J. Biol. Chem."},{"issue":"3","key":"10.1016\/j.watres.2025.123726_bib0052","doi-asserted-by":"crossref","first-page":"R94","DOI":"10.1016\/j.cub.2015.12.021","article-title":"The nitrogen cycle","volume":"26","author":"Stein","year":"2016","journal-title":"Curr. Biol."},{"issue":"6","key":"10.1016\/j.watres.2025.123726_bib0053","doi-asserted-by":"crossref","first-page":"1805","DOI":"10.3390\/su10061805","article-title":"Commercial African catfish (Clarias gariepinus) recirculating aquaculture systems: assessment of element and energy pathways with special focus on the phosphorus cycle","volume":"10","author":"Strauch","year":"2018","journal-title":"Sustainability"},{"key":"10.1016\/j.watres.2025.123726_bib0054","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1016\/j.aquaeng.2018.04.002","volume":"82","author":"Suantika","year":"2018","journal-title":"Aquac. Eng."},{"issue":"9","key":"10.1016\/j.watres.2025.123726_bib0055","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/MRA.01474-20","article-title":"Complete genome and plasmid sequences of three Fluviibacter phosphoraccumulans polyphosphate-accumulating bacterioplankton strains isolated from surface river water","volume":"10","author":"Suda","year":"2021","journal-title":"Microbiol. Resour. Announc."},{"issue":"7","key":"10.1016\/j.watres.2025.123726_bib0056","doi-asserted-by":"crossref","first-page":"1308","DOI":"10.3390\/microorganisms12071308","article-title":"The phylogeny and metabolic potentials of an aromatics-degrading marivivens bacterium isolated from intertidal seawater in East China Sea","volume":"12","author":"Sun","year":"2024","journal-title":"Microorganisms"},{"issue":"1","key":"10.1016\/j.watres.2025.123726_bib0057","doi-asserted-by":"crossref","first-page":"129","DOI":"10.2754\/avb200574010129","article-title":"Nitrite poisoning of fish in aquaculture facilities with water-recirculating systems","volume":"74","author":"Svobodova","year":"2005","journal-title":"Acta Vet. Brno"},{"key":"10.1016\/j.watres.2025.123726_bib0058","doi-asserted-by":"crossref","DOI":"10.1111\/raq.12921","article-title":"A review of the benefits and limitations of waste nutrient treatment in aquaculture pond facilities","author":"Tabrett","year":"2024","journal-title":"Rev. Aquac."},{"issue":"6","key":"10.1016\/j.watres.2025.123726_bib0059","doi-asserted-by":"crossref","first-page":"1040","DOI":"10.1093\/bioinformatics\/bty741","article-title":"NCycDB: a curated integrative database for fast and accurate metagenomic profiling of N cycling genes","volume":"35","author":"Tu","year":"2019","journal-title":"Bioinformatics"},{"key":"10.1016\/j.watres.2025.123726_bib0060","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s40168-018-0541-1","article-title":"MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis","volume":"6","author":"Uritskiy","year":"2018","journal-title":"Microbiome"},{"key":"10.1016\/j.watres.2025.123726_bib0061","series-title":"ggplot2: Elegant Graphics for Data Analysis","author":"Wickham","year":"2016"},{"key":"10.1016\/j.watres.2025.123726_bib0062","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1023\/B:EGAH.0000039587.64830.43","article-title":"Nitrogen and phosphorus cycling in shrimp ponds and the measures for sustainable management","volume":"26","author":"Xia","year":"2004","journal-title":"Environ. Geochem. Health"},{"issue":"12","key":"10.1016\/j.watres.2025.123726_bib0063","doi-asserted-by":"crossref","first-page":"34760","DOI":"10.1007\/s11356-022-24585-2","article-title":"Exploring the mechanism of a novel recirculating aquaculture system based on water quality parameters and bacterial communities","volume":"30","author":"Xiao","year":"2023","journal-title":"Environ. Sci. Pollut. Res. Int."},{"key":"10.1016\/j.watres.2025.123726_bib0064","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.margen.2018.03.001","article-title":"Complete genome sequence of Erythrobacter seohaensis SW-135T sheds light on the ecological role of the genus Erythrobacter for phosphorus cycle in the marine environment","volume":"40","author":"Xu","year":"2018","journal-title":"Mar. Genom."},{"key":"10.1016\/j.watres.2025.123726_bib0065","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.137949","article-title":"Phosphorous recovery from a novel recirculating aquaculture system followed by its sustainable reuse as a fertilizer","volume":"722","author":"Yogev","year":"2020","journal-title":"Sci. Total Environ."},{"issue":"1","key":"10.1016\/j.watres.2025.123726_bib0066","doi-asserted-by":"crossref","first-page":"fnw241","DOI":"10.1093\/femsle\/fnw241","article-title":"A role of nitrite reductase (NirBD) for NO homeostatic regulation in Streptomyces coelicolor A3(2)","volume":"364","author":"Yukioka","year":"2017","journal-title":"FEMS Microbiol. Lett."},{"issue":"1","key":"10.1016\/j.watres.2025.123726_bib0067","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1186\/s40168-022-01292-1","article-title":"PCycDB: a comprehensive and accurate database for fast analysis of P cycling genes","volume":"10","author":"Zeng","year":"2022","journal-title":"Microbiome"},{"issue":"7900","key":"10.1016\/j.watres.2025.123726_bib0068","doi-asserted-by":"crossref","first-page":"E2","DOI":"10.1038\/s41586-021-04331-3","article-title":"Aquaculture will continue to depend more on land than sea","volume":"603","author":"Zhang","year":"2022","journal-title":"Nature"},{"issue":"24","key":"10.1016\/j.watres.2025.123726_bib0069","doi-asserted-by":"crossref","first-page":"3799","DOI":"10.3390\/ani13243799","article-title":"Differential toxicity responses between Hepatopancreas and gills in Litopenaeus vannamei under chronic Ammonia-N exposure","volume":"13","author":"Zhang","year":"2023","journal-title":"Animals"},{"issue":"4","key":"10.1016\/j.watres.2025.123726_bib0070","doi-asserted-by":"crossref","first-page":"2194","DOI":"10.1111\/raq.12429","article-title":"Effects of ammonia on shrimp physiology and immunity: a review","volume":"12","author":"Zhao","year":"2020","journal-title":"Rev. Aquac."}],"container-title":["Water Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425006359?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425006359?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,8]],"date-time":"2025-10-08T06:33:16Z","timestamp":1759905196000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0043135425006359"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,7]]},"references-count":70,"alternative-id":["S0043135425006359"],"URL":"https:\/\/doi.org\/10.1016\/j.watres.2025.123726","relation":{},"ISSN":["0043-1354"],"issn-type":[{"value":"0043-1354","type":"print"}],"subject":[],"published":{"date-parts":[[2025,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Coupled nitrogen and phosphorus cycles mediated by coordinated variations of functional microbes in industrial recirculating aquaculture system","name":"articletitle","label":"Article Title"},{"value":"Water Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.watres.2025.123726","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Published by Elsevier Ltd.","name":"copyright","label":"Copyright"}],"article-number":"123726"}}