{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T09:37:20Z","timestamp":1790156240740,"version":"4.0.1"},"reference-count":47,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,6,3]],"date-time":"2025-06-03T00:00:00Z","timestamp":1748908800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100012925","name":"Northern Ireland Department of Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100012925","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000265","name":"MRC","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000265","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000873","name":"Queen's University Belfast","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000873","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001626","name":"Public Health Agency","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001626","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100009748","name":"Northern Ireland Department of Agriculture Environment and Rural Affairs","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100009748","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100032060","name":"Poultry Hub Australia","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100032060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Water Research"],"published-print":{"date-parts":[[2025,9]]},"DOI":"10.1016\/j.watres.2025.123953","type":"journal-article","created":{"date-parts":[[2025,6,3]],"date-time":"2025-06-03T19:18:19Z","timestamp":1748978299000},"page":"123953","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":5,"special_numbering":"C","title":["Combining analysis of individual and wastewater whole genome sequencing improves SARS-CoV-2 surveillance"],"prefix":"10.1016","volume":"284","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4825-4088","authenticated-orcid":false,"given":"Evan P.","family":"Troendle","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4050-8330","authenticated-orcid":false,"given":"Andrew J.","family":"Lee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marina I.","family":"Reyne","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danielle M.","family":"Allen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9330-5820","authenticated-orcid":false,"given":"Stephen J.","family":"Bridgett","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-9538-7233","authenticated-orcid":false,"given":"Clara H.","family":"Radulescu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9349-7287","authenticated-orcid":false,"given":"Michael","family":"Glenn","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John-Paul","family":"Wilkins","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Francesco","family":"Rubino","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Behnam","family":"Firoozi Nejad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cormac","family":"McSparron","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2515-6151","authenticated-orcid":false,"given":"Marc","family":"Niebel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Derek J.","family":"Fairley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kate E.","family":"Binley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7183-1555","authenticated-orcid":false,"given":"Christopher J.","family":"Creevey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2327-5560","authenticated-orcid":false,"given":"Jennifer M.","family":"McKinley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4048-6725","authenticated-orcid":false,"given":"Timofey","family":"Skvortsov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Deirdre F.","family":"Gilpin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John W.","family":"McGrath","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4895-1983","authenticated-orcid":false,"given":"Connor G.\u202fG.","family":"Bamford","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0157-1211","authenticated-orcid":false,"given":"David A.","family":"Simpson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"2","key":"10.1016\/j.watres.2025.123953_bib0001","doi-asserted-by":"crossref","DOI":"10.1128\/MRA.01229-21","article-title":"Genome sequencing of wastewater confirms the arrival of the SARS-CoV-2 omicron variant at Frankfurt airport but limited spread in the City of Frankfurt, Germany, in November 2021","volume":"11","author":"Agrawal","year":"2022","journal-title":"Microbiol. Resour. Announc."},{"key":"10.1016\/j.watres.2025.123953_bib0002","first-page":"jiae205","article-title":"Genomic analysis and surveillance of Respiratory syncytial virus using wastewater-based epidemiology","author":"Allen","year":"2024","journal-title":"J. Infect. Dis"},{"key":"10.1016\/j.watres.2025.123953_bib0003","unstructured":"Andrews, S. 2010 FastQC: a quality control tool for high throughput sequence data."},{"key":"10.1016\/j.watres.2025.123953_bib0004","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2022.119306","article-title":"City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 alpha and delta variants","volume":"226","author":"Brunner","year":"2022","journal-title":"Water Res"},{"key":"10.1016\/j.watres.2025.123953_bib0005","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2023.120804","article-title":"Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England","volume":"247","author":"Brunner","year":"2023","journal-title":"Water Res"},{"issue":"17","key":"10.1016\/j.watres.2025.123953_bib0006","doi-asserted-by":"crossref","first-page":"11756","DOI":"10.1021\/acs.est.1c03589","article-title":"Monitoring emergence of the SARS-CoV-2 B1.1.7 variant through the Spanish national SARS-CoV-2 wastewater surveillance system (VATar COVID-19)","volume":"55","author":"Carcereny","year":"2021","journal-title":"Env. Sci. Technol"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0007","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.03177-22","article-title":"Rapid assessment of SARS-CoV-2 variant-associated mutations in wastewater using real-time RT-PCR","volume":"11","author":"Farkas","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.watres.2025.123953_bib0008","series-title":"MiniXT Protocol","author":"Fuchs","year":"2021"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0009","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1186\/s12967-022-03307-9","article-title":"Mini-XT, a miniaturized tagmentation-based protocol for efficient sequencing of SARS-CoV-2","volume":"20","author":"Fuchs","year":"2022","journal-title":"J Transl Med"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0010","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1186\/s13059-018-1618-7","article-title":"An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar","volume":"20","author":"Grubaugh","year":"2019","journal-title":"Genome Biol"},{"issue":"8","key":"10.1016\/j.watres.2025.123953_bib0011","doi-asserted-by":"crossref","first-page":"e556","DOI":"10.1016\/S2666-5247(22)00154-9","article-title":"Wastewater surveillance for rapid identification of infectious diseases in prisons","volume":"3","author":"Hassard","year":"2022","journal-title":"Lancet Microbe"},{"key":"10.1016\/j.watres.2025.123953_bib0012","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.143578","article-title":"Detection of SARS-CoV-2 in wastewater in Japan during a COVID-19 outbreak","volume":"758","author":"Hata","year":"2021","journal-title":"Sci. Total Environ."},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0013","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1017\/S095026881000316X","article-title":"Role of environmental poliovirus surveillance in global polio eradication and beyond","volume":"140","author":"Hovi","year":"2012","journal-title":"Epidemiol. Infect"},{"issue":"8","key":"10.1016\/j.watres.2025.123953_bib0014","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.1038\/s41564-022-01185-x","article-title":"Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC","volume":"7","author":"Jahn","year":"2022","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.watres.2025.123953_bib0015","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.141364","article-title":"Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19","volume":"749","author":"Jones","year":"2020","journal-title":"Sci. Total Environ."},{"issue":"7925","key":"10.1016\/j.watres.2025.123953_bib0016","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1038\/s41586-022-05049-6","article-title":"Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission","volume":"609","author":"Karthikeyan","year":"2022","journal-title":"Nature"},{"issue":"49","key":"10.1016\/j.watres.2025.123953_bib0017","doi-asserted-by":"crossref","first-page":"1049","DOI":"10.46234\/ccdcw2021.255","article-title":"GISAID's role in pandemic response","volume":"3","author":"Khare","year":"2021","journal-title":"China CDC Wkly"},{"key":"10.1016\/j.watres.2025.123953_bib0018","doi-asserted-by":"crossref","DOI":"10.1016\/j.cej.2022.135936","article-title":"Lead time of early warning by wastewater surveillance for COVID-19: geographical variations and impacting factors","volume":"441","author":"Kumar","year":"2022","journal-title":"Chem. Eng. J."},{"key":"10.1016\/j.watres.2025.123953_bib0019","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.164766","article-title":"Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution","volume":"893","author":"Kuroiwa","year":"2023","journal-title":"Sci. Total Environ."},{"issue":"43","key":"10.1016\/j.watres.2025.123953_bib0020","doi-asserted-by":"crossref","first-page":"1162","DOI":"10.15585\/mmwr.mm7243a2","article-title":"Early detection and surveillance of the SARS-CoV-2 variant BA.2.86 \u2014 Worldwide, July\u2013October 2023","volume":"72","author":"Lambrou","year":"2023","journal-title":"Cent. Dis. Control Prev. (CDC) Morb. Mortal. Wkly. Rep. (MMWR)"},{"key":"10.1016\/j.watres.2025.123953_bib0021","doi-asserted-by":"crossref","DOI":"10.1016\/S2666-5247(24)00175-7","article-title":"Wastewater monitoring of human and avian influenza A viruses in Northern Ireland: a genomic surveillance study","author":"Lee","year":"2024","journal-title":"Lancet Microbe"},{"issue":"6627","key":"10.1016\/j.watres.2025.123953_bib0022","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1126\/science.ade2503","article-title":"Wastewater surveillance for public health","volume":"379","author":"Levy","year":"2023","journal-title":"Science"},{"key":"10.1016\/j.watres.2025.123953_bib0023","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2022.128667","article-title":"SARS-CoV-2 shedding sources in wastewater and implications for wastewater-based epidemiology","volume":"432","author":"Li","year":"2022","journal-title":"J Hazard Mater"},{"issue":"10","key":"10.1016\/j.watres.2025.123953_bib0024","doi-asserted-by":"crossref","first-page":"1774","DOI":"10.2166\/wh.2024.042","article-title":"Detection of SARS-CoV-2 variants related mutations in wastewater using RT-qPCR and variant-specific probes in Porto Alegre, Southern Brazil","volume":"22","author":"Mangini","year":"2024","journal-title":"J Water Health"},{"key":"10.1016\/j.watres.2025.123953_bib0025","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.coesh.2020.04.006","article-title":"The potential of wastewater-based epidemiology as surveillance and early warning of infectious disease outbreaks","volume":"17","author":"Mao","year":"2020","journal-title":"Curr. Opin. Environ. Sci. Health"},{"key":"10.1016\/j.watres.2025.123953_bib0026","doi-asserted-by":"crossref","unstructured":"Martin, M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. 2011 17(1), 3.","DOI":"10.14806\/ej.17.1.200"},{"issue":"Volume 49","key":"10.1016\/j.watres.2025.123953_bib0027","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1146\/annurev.mi.49.100195.002333","article-title":"ENVIRONMENTAL VIROLOGY: from detection of virus in sewage and water by isolation to identification by molecular biology\u2014A trip of over 50 years","volume":"49","author":"Metcalf","year":"1995","journal-title":"Annu. Rev. Microbiol"},{"issue":"6","key":"10.1016\/j.watres.2025.123953_bib0028","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1016\/j.medj.2022.04.001","article-title":"Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection","volume":"3","author":"Natarajan","year":"2022","journal-title":"Med"},{"issue":"10","key":"10.1016\/j.watres.2025.123953_bib0029","doi-asserted-by":"crossref","first-page":"1360","DOI":"10.1093\/bioinformatics\/btaa977","article-title":"On the complexity of haplotyping a microbial community","volume":"37","author":"Nicholls","year":"2021","journal-title":"Bioinformatics"},{"issue":"2","key":"10.1016\/j.watres.2025.123953_bib0030","doi-asserted-by":"crossref","DOI":"10.1093\/ve\/veab064","article-title":"Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool","volume":"7","author":"O\u2019Toole","year":"2021","journal-title":"Virus Evol"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0031","first-page":"e00103","article-title":"Wastewater-based surveillance as a tool for public health action: sARS-CoV-2 and beyond","volume":"37","author":"Parkins","year":"2023","journal-title":"Clin. Microbiol. Rev"},{"key":"10.1016\/j.watres.2025.123953_bib0032","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.151283","article-title":"RT-qPCR detection of SARS-CoV-2 mutations S 69-70 del, S N501Y and N D3L associated with variants of concern in Canadian wastewater samples","volume":"810","author":"Peterson","year":"2022","journal-title":"Sci Total Env."},{"issue":"11","key":"10.1016\/j.watres.2025.123953_bib0033","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1038\/s41564-020-0770-5","article-title":"A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology","volume":"5","author":"Rambaut","year":"2020","journal-title":"Nat. Microbiol."},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0034","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1186\/s13073-024-01409-1","article-title":"SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics","volume":"16","author":"Rice","year":"2024","journal-title":"Genome Med"},{"issue":"5","key":"10.1016\/j.watres.2025.123953_bib0035","doi-asserted-by":"crossref","first-page":"1014","DOI":"10.1111\/j.1365-2672.2012.05384.x","article-title":"PCR inhibitors - occurrence, properties and removal","volume":"113","author":"Schrader","year":"2012","journal-title":"J Appl Microbiol"},{"issue":"10","key":"10.1016\/j.watres.2025.123953_bib0036","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.3390\/microorganisms12102001","article-title":"Real-time monitoring of SARS-CoV-2 variants in Oklahoma wastewater through Allele-specific RT-qPCR","volume":"12","author":"Shelton","year":"2024","journal-title":"Microorganisms"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0037","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/s41467-022-28246-3","article-title":"Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater","volume":"13","author":"Smyth","year":"2022","journal-title":"Nat Commun"},{"issue":"5","key":"10.1016\/j.watres.2025.123953_bib0038","doi-asserted-by":"crossref","first-page":"1402","DOI":"10.1128\/AEM.01899-08","article-title":"Eukaryotic viruses in wastewater samples from the United States","volume":"75","author":"Symonds","year":"2009","journal-title":"Appl. Env. Microbiol"},{"issue":"3","key":"10.1016\/j.watres.2025.123953_bib0039","doi-asserted-by":"crossref","first-page":"e99","DOI":"10.1016\/S2666-5247(20)30054-9","article-title":"An integrated national scale SARS-CoV-2 genomic surveillance network","volume":"1","year":"2020","journal-title":"Lancet Microbe"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0040","doi-asserted-by":"crossref","first-page":"8386","DOI":"10.1038\/s41467-024-52427-x","article-title":"Towards geospatially-resolved public-health surveillance via wastewater sequencing","volume":"15","author":"Tierney","year":"2024","journal-title":"Nat Commun"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0041","doi-asserted-by":"crossref","first-page":"6878","DOI":"10.1038\/s41467-023-42064-1","article-title":"Wastewater sequencing reveals community and variant dynamics of the collective human virome","volume":"14","author":"Tisza","year":"2023","journal-title":"Nat Commun"},{"issue":"32","key":"10.1016\/j.watres.2025.123953_bib0042","doi-asserted-by":"crossref","first-page":"79315","DOI":"10.1007\/s11356-023-27877-3","article-title":"Wastewater early warning system for SARS-CoV-2 outbreaks and variants in a Coru\u00f1a, Spain","volume":"30","author":"Trigo-Tasende","year":"2023","journal-title":"Environ. Sci. Pollut. Res."},{"issue":"6","key":"10.1016\/j.watres.2025.123953_bib0043","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1038\/s41588-021-00862-7","article-title":"Ultrafast sample placement on existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic","volume":"53","author":"Turakhia","year":"2021","journal-title":"Nat. Genet"},{"key":"10.1016\/j.watres.2025.123953_bib0044","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.149930","article-title":"SARS-CoV-2 variant detection at a university dormitory using wastewater genomic tools","volume":"805","author":"Vo","year":"2022","journal-title":"Sci. Total Environ."},{"issue":"10334","key":"10.1016\/j.watres.2025.123953_bib0045","doi-asserted-by":"crossref","first-page":"1513","DOI":"10.1016\/S0140-6736(21)02796-3","article-title":"Estimating excess mortality due to the COVID-19 pandemic: a systematic analysis of COVID-19-related mortality, 2020\u201321","volume":"399","author":"Wang","year":"2022","journal-title":"Lancet"},{"issue":"7798","key":"10.1016\/j.watres.2025.123953_bib0046","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1038\/s41586-020-2008-3","article-title":"A new coronavirus associated with human respiratory disease in China","volume":"579","author":"Wu","year":"2020","journal-title":"Nature"},{"issue":"1","key":"10.1016\/j.watres.2025.123953_bib0047","doi-asserted-by":"crossref","first-page":"6325","DOI":"10.1038\/s41467-023-41369-5","article-title":"SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses","volume":"14","author":"Yousif","year":"2023","journal-title":"Nat Commun"}],"container-title":["Water Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425008619?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0043135425008619?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,11,4]],"date-time":"2025-11-04T02:06:28Z","timestamp":1762221988000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0043135425008619"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,9]]},"references-count":47,"alternative-id":["S0043135425008619"],"URL":"https:\/\/doi.org\/10.1016\/j.watres.2025.123953","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2024.07.22.24310067","asserted-by":"object"}]},"ISSN":["0043-1354"],"issn-type":[{"value":"0043-1354","type":"print"}],"subject":[],"published":{"date-parts":[[2025,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Combining analysis of individual and wastewater whole genome sequencing improves SARS-CoV-2 surveillance","name":"articletitle","label":"Article Title"},{"value":"Water Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.watres.2025.123953","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Author(s). Published by Elsevier Ltd.","name":"copyright","label":"Copyright"}],"article-number":"123953"}}