{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,12]],"date-time":"2025-10-12T02:06:10Z","timestamp":1760234770566,"version":"build-2065373602"},"reference-count":72,"publisher":"Elsevier BV","issue":"5","license":[{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2013,7,20]],"date-time":"2013-07-20T00:00:00Z","timestamp":1374278400000},"content-version":"vor","delay-in-days":992,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2010,11,1]],"date-time":"2010-11-01T00:00:00Z","timestamp":1288569600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/100000060","name":"NIAID","doi-asserted-by":"crossref","award":["N01-AI-15447"],"award-info":[{"award-number":["N01-AI-15447"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Genomics"],"published-print":{"date-parts":[[2010,11]]},"DOI":"10.1016\/j.ygeno.2010.07.005","type":"journal-article","created":{"date-parts":[[2010,7,21]],"date-time":"2010-07-21T04:34:02Z","timestamp":1279686842000},"page":"290-302","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"title":["Tracing phylogenomic events leading to diversity of Haemophilus influenzae and the emergence of Brazilian Purpuric Fever (BPF)-associated clones"],"prefix":"10.1016","volume":"96","author":[{"given":"Leka","family":"Papazisi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shashikala","family":"Ratnayake","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian G.","family":"Remortel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Geoffrey R.","family":"Bock","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wei","family":"Liang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexander I.","family":"Saeed","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jia","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert D.","family":"Fleischmann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mogens","family":"Kilian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Scott N.","family":"Peterson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.ygeno.2010.07.005_bb0005","series-title":"Manual of Clinical Microbiology","first-page":"636","article-title":"Haemophilus","author":"Kilian","year":"2007"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0010","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1128\/JCM.41.4.1623-1636.2003","article-title":"Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing","volume":"41","author":"Meats","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0015","doi-asserted-by":"crossref","first-page":"302","DOI":"10.1128\/CMR.13.2.302","article-title":"Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25years after the use of the polysaccharide vaccine and a decade after the advent of conjugates","volume":"13","author":"Peltola","year":"2000","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0020","doi-asserted-by":"crossref","first-page":"1853","DOI":"10.1111\/j.1365-2958.1990.tb02034.x","article-title":"The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export","volume":"4","author":"Kroll","year":"1990","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0025","doi-asserted-by":"crossref","first-page":"594","DOI":"10.1128\/CMR.00020-08","article-title":"Emergence and disappearance of a virulent clone of Haemophilus influenzae biogroup aegyptius, cause of Brazilian Purpuric Fever","volume":"21","author":"Harrison","year":"2008","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0030","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1093\/infdis\/161.1.130","article-title":"Brazilian Purpuric Fever: evolutionary genetic relationships of the case clone of Haemophilus influenzae biogroup aegyptius to encapsulated strains of Haemophilus influenzae","volume":"161","author":"Musser","year":"1990","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0035","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1046\/j.1365-2958.2002.03254.x","article-title":"Evolution of the paralogous hap and iga genes in Haemophilus influenzae: evidence for a conserved hap pseudogene associated with microcolony formation in the recently diverged Haemophilus aegyptius and H. influenzae biogroup aegyptius","volume":"46","author":"Kilian","year":"2002","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0040","doi-asserted-by":"crossref","first-page":"2694","DOI":"10.1128\/IAI.70.5.2694-2699.2002","article-title":"Genomic analysis of the F3031 Brazilian Purpuric Fever clone of Haemophilus influenzae biogroup aegyptius by PCR-based subtractive hybridization","volume":"70","author":"Smoot","year":"2002","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0045","doi-asserted-by":"crossref","first-page":"1524","DOI":"10.1128\/jcm.26.8.1524-1534.1988","article-title":"Biochemical, genetic, and epidemiologic characterization of Haemophilus influenzae biogroup aegyptius (Haemophilus aegyptius) strains associated with Brazilian Purpuric Fever","volume":"26","author":"Brenner","year":"1988","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0050","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1016\/S0140-6736(87)92788-7","article-title":"Brasilian Purpuric Fever in central Australia","volume":"2","author":"McIntyre","year":"1987","journal-title":"Lancet"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0055","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1128\/iai.60.2.618-622.1992","article-title":"Insertion sequence IS1016 and absence of Haemophilus capsulation genes in the Brazilian Purpuric Fever clone of Haemophilus influenzae biogroup aegyptius","volume":"60","author":"Dobson","year":"1992","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0060","doi-asserted-by":"crossref","first-page":"1101","DOI":"10.1046\/j.1365-2958.2003.03359.x","article-title":"Identification and characterization of genomic loci unique to the Brazilian Purpuric Fever clonal group of H. influenzae biogroup aegyptius: functionality explored using meningococcal homology","volume":"47","author":"Li","year":"2003","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0065","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/S0147-619X(02)00020-3","article-title":"Characterisation and genetic organisation of a 24-MDa plasmid from the Brazilian Purpuric Fever clone of Haemophilus influenzae biogroup aegyptius","volume":"48","author":"Kroll","year":"2002","journal-title":"Plasmid"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0070","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1126\/science.7542800","article-title":"Whole-genome random sequencing and assembly of Haemophilus influenzae Rd","volume":"269","author":"Fleischmann","year":"1995","journal-title":"Science"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0075","doi-asserted-by":"crossref","first-page":"5853","DOI":"10.1128\/IAI.73.9.5853-5863.2005","article-title":"Characterization of genetic and phenotypic diversity of invasive nontypeable Haemophilus influenzae","volume":"73","author":"Erwin","year":"2005","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0080","doi-asserted-by":"crossref","first-page":"4627","DOI":"10.1128\/JB.187.13.4627-4636.2005","article-title":"Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20","volume":"187","author":"Harrison","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0085","doi-asserted-by":"crossref","first-page":"R103","DOI":"10.1186\/gb-2007-8-6-r103","article-title":"Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains","volume":"8","author":"Hogg","year":"2007","journal-title":"Genome Biol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0090","doi-asserted-by":"crossref","first-page":"3366","DOI":"10.1128\/IAI.01904-05","article-title":"Differential genome contents of nontypeable Haemophilus influenzae strains from adults with chronic obstructive pulmonary disease","volume":"74","author":"Fernaays","year":"2006","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0095","doi-asserted-by":"crossref","first-page":"3479","DOI":"10.1128\/IAI.73.6.3479-3491.2005","article-title":"Identification, distribution, and expression of novel genes in 10 clinical isolates of nontypeable Haemophilus influenzae","volume":"73","author":"Shen","year":"2005","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0100","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1016\/0378-1119(85)90120-9","article-title":"Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors","volume":"33","author":"Yanisch-Perron","year":"1985","journal-title":"Gene"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0105","series-title":"Current Protocols in Molecular Biology","first-page":"5.1.1","article-title":"Overview of recombinant DNA libraries","author":"Moore","year":"1993"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0110","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1046\/j.1365-2958.2003.03907.x","article-title":"Identification of competence pheromone responsive genes in Streptococcus pneumoniae by use of DNA microarrays","volume":"51","author":"Peterson","year":"2004","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0115","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1089\/gst.1995.1.9","article-title":"A new tool for assembling large shotgun sequencing projects","volume":"1","author":"Sutton","year":"1995","journal-title":"Genome Sci. Technol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0120","doi-asserted-by":"crossref","first-page":"13950","DOI":"10.1073\/pnas.0506758102","article-title":"Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial \u201cpan-genome\u201d","volume":"102","author":"Tettelin","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0125","doi-asserted-by":"crossref","first-page":"4636","DOI":"10.1093\/nar\/27.23.4636","article-title":"Improved microbial gene identification with GLIMMER","volume":"27","author":"Delcher","year":"1999","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0130","doi-asserted-by":"crossref","first-page":"862","DOI":"10.1128\/mr.57.4.862-952.1993","article-title":"Functions of the gene products of Escherichia coli","volume":"57","author":"Riley","year":"1993","journal-title":"Microbiol. Rev."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0135","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0140","doi-asserted-by":"crossref","first-page":"868","DOI":"10.1101\/gr.9.9.868","article-title":"CAP3: a DNA sequence assembly program","volume":"9","author":"Huang","year":"1999","journal-title":"Genome Res."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0145","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","article-title":"Clustal W and Clustal X version 2.0","volume":"23","author":"Larkin","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0150","doi-asserted-by":"crossref","first-page":"R9","DOI":"10.1186\/gb-2003-4-2-r9","article-title":"Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray","volume":"4","author":"Bozdech","year":"2003","journal-title":"Genome Biol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0155","doi-asserted-by":"crossref","first-page":"1927","DOI":"10.1128\/IAI.73.4.1927-1938.2005","article-title":"Cloning and sequencing of a genomic island found in the Brazilian Purpuric Fever clone of Haemophilus influenzae biogroup aegyptius","volume":"73","author":"McGillivary","year":"2005","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0160","doi-asserted-by":"crossref","first-page":"374","DOI":"10.2144\/03342mt01","article-title":"TM4: a free, open-source system for microarray data management and analysis","volume":"34","author":"Saeed","year":"2003","journal-title":"Biotechniques"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0165","doi-asserted-by":"crossref","DOI":"10.1186\/gb-2002-3-11-research0065","article-title":"Improved analytical methods for microarray-based genome-composition analysis","volume":"3","author":"Kim","year":"2002","journal-title":"Genome Biol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0170","doi-asserted-by":"crossref","first-page":"3823","DOI":"10.1128\/JCM.41.8.3823-3828.2003","article-title":"Differences in gene content among Salmonella enterica serovar typhi isolates","volume":"41","author":"Boyd","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0175","doi-asserted-by":"crossref","first-page":"8956","DOI":"10.1073\/pnas.122153699","article-title":"Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis","volume":"99","author":"Porwollik","year":"2002","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0180","doi-asserted-by":"crossref","first-page":"16043","DOI":"10.1073\/pnas.0503252102","article-title":"Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source","volume":"102","author":"Champion","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0185","doi-asserted-by":"crossref","first-page":"e7","DOI":"10.1371\/journal.ppat.0030007","article-title":"Insertion sequence-driven diversification creates a globally dispersed emerging multiresistant subspecies of E. faecium","volume":"3","author":"Leavis","year":"2007","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0190","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1093\/bioinformatics\/btg180","article-title":"MrBayes 3: Bayesian phylogenetic inference under mixed models","volume":"19","author":"Ronquist","year":"2003","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0195","doi-asserted-by":"crossref","first-page":"7297","DOI":"10.1128\/JB.00664-06","article-title":"Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains","volume":"188","author":"Stabler","year":"2006","journal-title":"J. Bacteriol."},{"year":"1999","series-title":"Biostatistical Analysis","author":"Zar","key":"10.1016\/j.ygeno.2010.07.005_bb0200"},{"year":"2004","series-title":"Handbook of Parametric and Nonparametric Statistical Procedures","author":"Sheskin","key":"10.1016\/j.ygeno.2010.07.005_bb0205"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0210","doi-asserted-by":"crossref","first-page":"4389","DOI":"10.1128\/iai.63.11.4389-4394.1995","article-title":"Distinct antigenic and genetic properties of the immunoglobulin A1 protease produced by Haemophilus influenzae biogroup aegyptius associated with Brazilian Purpuric Fever in Brazil","volume":"63","author":"Lomholt","year":"1995","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0215","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1111\/j.1365-2958.1994.tb01283.x","article-title":"A Haemophilus influenzae IgA protease-like protein promotes intimate interaction with human epithelial cells","volume":"14","author":"St Geme","year":"1994","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0220","doi-asserted-by":"crossref","first-page":"2457","DOI":"10.1128\/IAI.72.5.2457-2461.2004","article-title":"Haemophilus influenzae: genetic variability and natural selection to identify virulence factors","volume":"72","author":"Gilsdorf","year":"2004","journal-title":"Infect. Immun."},{"issue":"Pt 4","key":"10.1016\/j.ygeno.2010.07.005_bb0225","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1099\/13500872-145-4-905","article-title":"Characterization of hgpA, a gene encoding a haemoglobin\/haemoglobin\u2013haptoglobin-binding protein of Haemophilus influenzae","volume":"145","author":"Jin","year":"1999","journal-title":"Microbiology"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0230","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1046\/j.1462-5822.2001.00089.x","article-title":"Expression of pathogen-like Opa adhesins in commensal Neisseria: genetic and functional analysis","volume":"3","author":"Toleman","year":"2001","journal-title":"Cell Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0235","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1046\/j.1365-2958.2003.03749.x","article-title":"Mapping the binding domains on meningococcal Opa proteins for CEACAM1 and CEA receptors","volume":"50","author":"de Jonge","year":"2003","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0240","doi-asserted-by":"crossref","first-page":"4628","DOI":"10.1128\/iai.59.12.4628-4635.1991","article-title":"Interactions of Neisseria gonorrhoeae with human neutrophils: studies with purified PII (Opa) outer membrane proteins and synthetic Opa peptides","volume":"59","author":"Naids","year":"1991","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0245","doi-asserted-by":"crossref","first-page":"4626","DOI":"10.1128\/JB.183.15.000-000.2001","article-title":"Evolution of an autotransporter: domain shuffling and lateral transfer from pathogenic Haemophilus to Neisseria","volume":"183","author":"Davis","year":"2001","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0250","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.1128\/JB.181.4.1099-1109.1999","article-title":"Pseudomonas aeruginosa fur overlaps with a gene encoding a novel outer membrane lipoprotein, OmlA","volume":"181","author":"Ochsner","year":"1999","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0255","doi-asserted-by":"crossref","first-page":"1027","DOI":"10.1111\/j.1365-2958.2003.03903.x","article-title":"Structure of the OmpA-like domain of RmpM from Neisseria meningitidis","volume":"51","author":"Grizot","year":"2004","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0260","doi-asserted-by":"crossref","first-page":"3460","DOI":"10.1073\/pnas.051634598","article-title":"Complete genomic sequence of Pasteurella multocida, Pm70","volume":"98","author":"May","year":"2001","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0265","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1046\/j.1365-2958.2003.03433.x","article-title":"A novel cell-binding mechanism of Moraxella catarrhalis ubiquitous surface protein UspA: specific targeting of the N-domain of carcinoembryonic antigen-related cell adhesion molecules by UspA1","volume":"48","author":"Hill","year":"2003","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0270","doi-asserted-by":"crossref","first-page":"1364","DOI":"10.1128\/JB.182.5.1364-1373.2000","article-title":"The UspA1 protein and a second type of UspA2 protein mediate adherence of Moraxella catarrhalis to human epithelial cells in vitro","volume":"182","author":"Lafontaine","year":"2000","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0275","doi-asserted-by":"crossref","first-page":"1588","DOI":"10.1128\/IAI.74.3.1588-1596.2006","article-title":"Biofilm formation by Moraxella catarrhalis in vitro: roles of the UspA1 adhesin and the Hag hemagglutinin","volume":"74","author":"Pearson","year":"2006","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0280","doi-asserted-by":"crossref","first-page":"5989","DOI":"10.1093\/emboj\/19.22.5989","article-title":"Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins","volume":"19","author":"Hoiczyk","year":"2000","journal-title":"EMBO J."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0285","doi-asserted-by":"crossref","first-page":"D274","DOI":"10.1093\/nar\/gkl925","article-title":"TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels","volume":"35","author":"Ren","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0290","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1128\/JB.180.1.107-118.1998","article-title":"The tryptophanase gene cluster of Haemophilus influenzae type b: evidence for horizontal gene transfer","volume":"180","author":"Martin","year":"1998","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0295","doi-asserted-by":"crossref","first-page":"6896","DOI":"10.1128\/IAI.68.12.6896-6902.2000","article-title":"Nucleotide sequence analysis of hypervariable junctions of Haemophilus influenzae pilus gene clusters","volume":"68","author":"Read","year":"2000","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0300","doi-asserted-by":"crossref","first-page":"6564","DOI":"10.1128\/jb.178.22.6564-6570.1996","article-title":"Duplication of pilus gene complexes of Haemophilus influenzae biogroup aegyptius","volume":"178","author":"Read","year":"1996","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0305","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1093\/dnares\/8.1.11","article-title":"Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12","volume":"8","author":"Hayashi","year":"2001","journal-title":"DNA Res."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0310","doi-asserted-by":"crossref","first-page":"722","DOI":"10.1038\/nrmicro1235","article-title":"Mobile genetic elements: the agents of open source evolution","volume":"3","author":"Frost","year":"2005","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0315","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1038\/nrmicro884","article-title":"Genomic islands in pathogenic and environmental microorganisms","volume":"2","author":"Dobrindt","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0320","doi-asserted-by":"crossref","first-page":"8742","DOI":"10.1073\/pnas.132266999","article-title":"On the evolution of cells","volume":"99","author":"Woese","year":"2002","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0325","series-title":"Medical Molecular Microbiolgy","first-page":"1967","article-title":"Haemophilus influenzae","author":"High","year":"2001"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0330","doi-asserted-by":"crossref","first-page":"3002","DOI":"10.1128\/IAI.72.5.3002-3010.2004","article-title":"Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates","volume":"72","author":"Munson","year":"2004","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0335","doi-asserted-by":"crossref","first-page":"1112","DOI":"10.1056\/NEJMoa022521","article-title":"An outbreak of conjunctivitis due to atypical Streptococcus pneumoniae","volume":"348","author":"Martin","year":"2003","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0340","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1038\/nature01586","article-title":"The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria","volume":"423","author":"Read","year":"2003","journal-title":"Nature"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0345","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1007\/s15010-007-6048-5","article-title":"Recurrent posttraumatic meningitis due to nontypable Haemophilus influenzae: case report and review of the literature","volume":"36","author":"Kunze","year":"2008","journal-title":"Infection"},{"key":"10.1016\/j.ygeno.2010.07.005_bb0350","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1093\/clinids\/22.6.1069","article-title":"Invasive disease due to Haemophilus influenzae serotype f: clinical and epidemiologic characteristics in the H. influenzae serotype b vaccine era. The Haemophilus influenzae Study Group","volume":"22","author":"Urwin","year":"1996","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0355","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1099\/00221287-93-1-9","article-title":"A taxonomic study of the genus Haemophilus, with the proposal of a new species","volume":"93","author":"Kilian","year":"1976","journal-title":"J. Gen. Microbiol."},{"key":"10.1016\/j.ygeno.2010.07.005_bb0360","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1086\/509824","article-title":"Haemophilus haemolyticus: a human respiratory tract commensal to be distinguished from Haemophilus influenzae","volume":"195","author":"Murphy","year":"2007","journal-title":"J. Infect. Dis."}],"container-title":["Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754310001588?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754310001588?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T06:14:09Z","timestamp":1760163249000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0888754310001588"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,11]]},"references-count":72,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2010,11]]}},"alternative-id":["S0888754310001588"],"URL":"https:\/\/doi.org\/10.1016\/j.ygeno.2010.07.005","relation":{},"ISSN":["0888-7543"],"issn-type":[{"type":"print","value":"0888-7543"}],"subject":[],"published":{"date-parts":[[2010,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Tracing phylogenomic events leading to diversity of Haemophilus influenzae and the emergence of Brazilian Purpuric Fever (BPF)-associated clones","name":"articletitle","label":"Article Title"},{"value":"Genomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ygeno.2010.07.005","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2010 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}