{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T23:16:11Z","timestamp":1783552571023,"version":"3.55.0"},"reference-count":35,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2020,11,1]],"date-time":"2020-11-01T00:00:00Z","timestamp":1604188800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,11,1]],"date-time":"2020-11-01T00:00:00Z","timestamp":1604188800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,5,1]],"date-time":"2022-05-01T00:00:00Z","timestamp":1651363200000},"content-version":"vor","delay-in-days":546,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"name":"Ministry of Higher Education and Research, LR99ES10 Human Genetics Laboratory."}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Genomics"],"published-print":{"date-parts":[[2020,11]]},"DOI":"10.1016\/j.ygeno.2020.07.003","type":"journal-article","created":{"date-parts":[[2020,7,6]],"date-time":"2020-07-06T11:25:49Z","timestamp":1594034749000},"page":"4189-4202","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":31,"title":["Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses"],"prefix":"10.1016","volume":"112","author":[{"given":"Rabeb","family":"Touati","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sondes","family":"Haddad-Boubaker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Imen","family":"Ferchichi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Imen","family":"Messaoudi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Afef Elloumi","family":"Ouesleti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Henda","family":"Triki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zied","family":"Lachiri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maher","family":"Kharrat","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"7798","key":"10.1016\/j.ygeno.2020.07.003_bb0005","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1038\/s41586-020-2012-7","article-title":"A pneumonia outbreak associated with a new coronavirus of probable bat origin","volume":"579","author":"Zhou","year":"2020","journal-title":"Nature"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0010","doi-asserted-by":"crossref","first-page":"3226","DOI":"10.1016\/j.ygeno.2020.06.016","article-title":"Molecular conservation and differential mutation on ORF3a gene in Indian SARS-CoV2 genomes","author":"Hassan","year":"2020","journal-title":"Genomics"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0015","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.meegid.2019.03.001","article-title":"Molecular epidemiology, evolution and phylogeny of SARS coronavirus","volume":"71","author":"Luk","year":"2019","journal-title":"Infect. Genet. Evol."},{"issue":"19","key":"10.1016\/j.ygeno.2020.07.003_bb0020","doi-asserted-by":"crossref","first-page":"1814","DOI":"10.1056\/NEJMoa1211721","article-title":"Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia","volume":"367","author":"Zaki","year":"2012","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0025","author":"World Health Organization"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0030","first-page":"26","article-title":"High contagiousness and rapid spread of severe acute respiratory syndrome coronavirus 2","author":"Sanche","year":"2020","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0035","series-title":"Ninth Report of the International Committee on Taxonomy of Viruses","author":"King","year":"2011"},{"issue":"8","key":"10.1016\/j.ygeno.2020.07.003_bb0040","doi-asserted-by":"crossref","first-page":"4012","DOI":"10.1128\/JVI.02605-06","article-title":"Evolutionary insights into the ecology of coronaviruses","volume":"81","author":"Vijaykrishna","year":"2007","journal-title":"J. Virol."},{"issue":"10","key":"10.1016\/j.ygeno.2020.07.003_bb0045","doi-asserted-by":"crossref","first-page":"1117","DOI":"10.3181\/0903-MR-94","article-title":"Coronavirus diversity, phylogeny and interspecies jumping","volume":"234","author":"Woo","year":"2009","journal-title":"Exp. Biol. Med."},{"issue":"1","key":"10.1016\/j.ygeno.2020.07.003_bb0050","doi-asserted-by":"crossref","first-page":"41","DOI":"10.3390\/v11010041","article-title":"Bats and coronaviruses","volume":"11","author":"Banerjee","year":"2019","journal-title":"Viruses"},{"issue":"10223","key":"10.1016\/j.ygeno.2020.07.003_bb0055","doi-asserted-by":"crossref","first-page":"514","DOI":"10.1016\/S0140-6736(20)30154-9","article-title":"A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster","volume":"395","author":"Chan","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0060","doi-asserted-by":"crossref","first-page":"104212","DOI":"10.1016\/j.meegid.2020.104212","article-title":"Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event","volume":"79","author":"Paraskevis","year":"2020","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0065","first-page":"1","article-title":"SARS-CoV-2: structural diversity, phylogeny, and potential animal host identification of spike glycoprotein","author":"Dabravolski","year":"2020","journal-title":"J. Med. Virol."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0070","first-page":"1","article-title":"Emergence of SARS-CoV-2 through recombination and strong purifying selection","author":"Li","year":"2020","journal-title":"Sci. Adv."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0075","first-page":"1","article-title":"Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins","author":"Lam","year":"2020","journal-title":"Nature"},{"issue":"3\u20134","key":"10.1016\/j.ygeno.2020.07.003_bb0080","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1016\/j.ygeno.2016.08.002","article-title":"Numerical encoding of DNA sequences by chaos game representation with application in similarity comparison","volume":"108","author":"Hoang","year":"2016","journal-title":"Genomics"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0085","article-title":"New intraclass helitrons classification using DNA-image sequences and machine learning approaches","author":"Touati","year":"2020","journal-title":"IRBM"},{"issue":"1","key":"10.1016\/j.ygeno.2020.07.003_bb0090","doi-asserted-by":"crossref","first-page":"170","DOI":"10.1186\/s12859-017-1584-1","article-title":"MicroRNA categorization using sequence motifs and k-mers","volume":"18","author":"Yousef","year":"2017","journal-title":"BMC Bioinform."},{"issue":"8","key":"10.1016\/j.ygeno.2020.07.003_bb0095","doi-asserted-by":"crossref","first-page":"2163","DOI":"10.1093\/nar\/18.8.2163","article-title":"Chaos game representation of gene structure","volume":"18","author":"Jeffrey","year":"1990","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0100","first-page":"864","article-title":"3D spectrum analysis of DNA sequence: application to Caenorhabditis elegans genome","author":"Oueslati","year":"2007","journal-title":"Bioinform. Bioeng."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0105","first-page":"205","article-title":"Spectral analysis of global behaviour of C. elegans chromosomes","volume":"8","author":"Oueslati","year":"2012","journal-title":"INTECH"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0110","series-title":"2016 Second International Conference on Computational Intelligence & Communication Technology (CICT) IEEE","first-page":"718","article-title":"Dwt based cancer identification using EIIP","author":"Chakraborty","year":"2016"},{"issue":"10","key":"10.1016\/j.ygeno.2020.07.003_bb0115","doi-asserted-by":"crossref","first-page":"2289","DOI":"10.1007\/s11517-019-02027-5","article-title":"The Helitron family classification using SVM based on Fourier transform features applied on an unbalanced dataset","volume":"57","author":"Touati","year":"2019","journal-title":"Med. Biol. Eng. Comput."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0120","doi-asserted-by":"crossref","first-page":"101579","DOI":"10.1016\/j.bspc.2019.101579","article-title":"Distinguishing between intra-genomic helitron families using time-frequency features and random forest approaches","volume":"54","author":"Touati","year":"2019","journal-title":"Biomed. Signal Process. Control"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0125","doi-asserted-by":"crossref","first-page":"100271","DOI":"10.1016\/j.imu.2019.100271","article-title":"Classification of intra-genomic helitrons based on features extracted from different orders of FCGS","volume":"18","author":"Touati","year":"2020","journal-title":"Inform. Med. Unlock."},{"issue":"2","key":"10.1016\/j.ygeno.2020.07.003_bb0130","doi-asserted-by":"crossref","first-page":"836","DOI":"10.1016\/j.bbe.2020.03.007","article-title":"A new numerical approach for DNA representation using modified Gabor wavelet transform for the identification of protein coding regions","volume":"40","author":"Kumar","year":"2020","journal-title":"Biocybernet. Biomed. Eng."},{"issue":"3","key":"10.1016\/j.ygeno.2020.07.003_bb0135","doi-asserted-by":"crossref","first-page":"1496","DOI":"10.1007\/s11227-018-2670-5","article-title":"Visualization of DNA methylation results through a GPU-based parallelization of the wavelet transform","volume":"75","author":"Fern\u00e1ndez","year":"2019","journal-title":"J. Supercomput."},{"issue":"4","key":"10.1016\/j.ygeno.2020.07.003_bb0140","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1137\/0515056","article-title":"Decomposition of Hardy functions into square integrable wavelets of constant shape","volume":"15","author":"Grossmann","year":"1984","journal-title":"SIAM J. Math. Anal."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0145","series-title":"Wavelet Theory and Applications: A Literature Study","first-page":"2005","author":"Merry","year":"2005"},{"issue":"1","key":"10.1016\/j.ygeno.2020.07.003_bb0150","first-page":"134","article-title":"The continuous wavelet transform and variable resolution time-frequency analysis","volume":"18","author":"Najmi","year":"1997","journal-title":"Johns Hopkins APL Tech. Digest."},{"issue":"1","key":"10.1016\/j.ygeno.2020.07.003_bb0155","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1128\/JVI.73.1.152-160.1999","article-title":"Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination","volume":"73","author":"Lole","year":"1999","journal-title":"Journal of virology"},{"issue":"4","key":"10.1016\/j.ygeno.2020.07.003_bb0160","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou","year":"1987","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0165","first-page":"9","article-title":"PAST: paleontological statistics software package for education and data analysis","volume":"4","author":"Harper Hammer","year":"2001","journal-title":"Palaeontol. Electron."},{"key":"10.1016\/j.ygeno.2020.07.003_bb0170","first-page":"2020","article-title":"Genomic and protein structure modelling analysis depicts the origin and infectivity of 2019-nCoV, a new coronavirus which caused a pneumonia outbreak in Wuhan, China","author":"Dong","year":"2020","journal-title":"bioRxiv"},{"key":"10.1016\/j.ygeno.2020.07.003_bb0175","first-page":"13","article-title":"Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus","author":"Hu","year":"2017","journal-title":"PLoS Pathog."}],"container-title":["Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754320306364?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754320306364?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T06:23:45Z","timestamp":1760163825000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0888754320306364"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,11]]},"references-count":35,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2020,11]]}},"alternative-id":["S0888754320306364"],"URL":"https:\/\/doi.org\/10.1016\/j.ygeno.2020.07.003","relation":{},"ISSN":["0888-7543"],"issn-type":[{"value":"0888-7543","type":"print"}],"subject":[],"published":{"date-parts":[[2020,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Comparative genomic signature representations of the emerging COVID-19 coronavirus and other coronaviruses: High identity and possible recombination between Bat and Pangolin coronaviruses","name":"articletitle","label":"Article Title"},{"value":"Genomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ygeno.2020.07.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2020 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}