{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,26]],"date-time":"2026-10-26T20:14:55Z","timestamp":1793045695415,"version":"4.5.0"},"reference-count":43,"publisher":"Elsevier BV","issue":"1","license":[{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,12,14]],"date-time":"2023-12-14T00:00:00Z","timestamp":1702512000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Genomics"],"published-print":{"date-parts":[[2024,1]]},"DOI":"10.1016\/j.ygeno.2023.110763","type":"journal-article","created":{"date-parts":[[2023,12,16]],"date-time":"2023-12-16T11:17:34Z","timestamp":1702725454000},"page":"110763","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":19,"title":["Genome analysis of the mpox (formerly monkeypox) virus and characterization of core\/variable regions"],"prefix":"10.1016","volume":"116","author":[{"given":"Zehui","family":"Yu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoxia","family":"Zou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhaobin","family":"Deng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mingde","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Congwei","family":"Gu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lu","family":"Fu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wudian","family":"Xiao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manli","family":"He","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lvqin","family":"He","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qian","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sicheng","family":"Liang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chengli","family":"Wen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhan","family":"L\u00fc","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ygeno.2023.110763_bb0005","doi-asserted-by":"crossref","first-page":"531","DOI":"10.1016\/j.jiph.2023.02.003","article-title":"Monkeypox (mpox) virus: classification, origin, transmission, genome organization, antiviral drugs, and molecular diagnosis","volume":"16","author":"Karagoz","year":"2023","journal-title":"J. Infect. Public Health"},{"key":"10.1016\/j.ygeno.2023.110763_bb0010","series-title":"Monkeypox Multi-Country Outbreak","author":"R.R. ASSESSMENT","year":"2022"},{"key":"10.1016\/j.ygeno.2023.110763_bb0015","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0010141","article-title":"The changing epidemiology of human monkeypox-a potential threat? A systematic review","volume":"16","author":"Bunge","year":"2022","journal-title":"PLoS Neglected Tropical Diseases"},{"key":"10.1016\/j.ygeno.2023.110763_bb0020","first-page":"593","article-title":"A human infection caused by monkeypox virus in Basankusu Territory, Democratic Republic of the Congo","volume":"46","author":"Ladnyj","year":"1972","journal-title":"Bull. World Health Organ."},{"key":"10.1016\/j.ygeno.2023.110763_bb0025","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1080\/01652176.2022.2088881","article-title":"Is monkeypox another reemerging viral zoonosis with many animal hosts yet to be defined?","volume":"42","author":"Bonilla-Aldana","year":"2022","journal-title":"Vet. Q."},{"key":"10.1016\/j.ygeno.2023.110763_bb0030","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1093\/infdis\/jiaa559","article-title":"Exportation of Monkeypox virus from the African continent","volume":"225","author":"Mauldin","year":"2022","journal-title":"J Infect Dis"},{"issue":"2022","key":"10.1016\/j.ygeno.2023.110763_bb0035","first-page":"1002","article-title":"Imported Monkeypox from international traveler, Maryland, USA","volume":"28","author":"Costello","year":"2021","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.ygeno.2023.110763_bb0040","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1016\/S1473-3099(22)00379-6","article-title":"Global monkeypox outbreak","volume":"22","author":"Venkatesan","year":"2022","journal-title":"Lancet Infect. Dis."},{"key":"10.1016\/j.ygeno.2023.110763_bb0045","doi-asserted-by":"crossref","first-page":"1425","DOI":"10.1007\/s15010-022-01935-3","article-title":"State-of-the-art on monkeypox virus: an emerging zoonotic disease","volume":"50","author":"Shafaati","year":"2022","journal-title":"Infection"},{"key":"10.1016\/j.ygeno.2023.110763_bb0050","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1006\/viro.2002.1446","article-title":"Analysis of the monkeypox virus genome","volume":"297","author":"Shchelkunov","year":"2002","journal-title":"Virology"},{"key":"10.1016\/j.ygeno.2023.110763_bb0055","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1016\/j.virusres.2006.01.016","article-title":"Poxviruses: past, present and future","volume":"117","author":"Lefkowitz","year":"2006","journal-title":"Virus Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0060","doi-asserted-by":"crossref","first-page":"1832","DOI":"10.3390\/biomedicines11071832","article-title":"An updated review on Monkeypox viral disease: emphasis on genomic diversity","volume":"11","author":"Rabaan","year":"2023","journal-title":"Biomedicines"},{"key":"10.1016\/j.ygeno.2023.110763_bb0065","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3001769","article-title":"Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus","volume":"20","author":"Happi","year":"2022","journal-title":"PLoS Biol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0070","doi-asserted-by":"crossref","DOI":"10.1016\/j.tmaid.2022.102402","article-title":"Phylogenomic analysis of the monkeypox virus (MPXV) 2022 outbreak: emergence of a novel viral lineage?","volume":"49","author":"Luna","year":"2022","journal-title":"Travel Med. Infect. Dis."},{"key":"10.1016\/j.ygeno.2023.110763_bb0075","doi-asserted-by":"crossref","first-page":"13085","DOI":"10.1038\/s41598-021-92315-8","article-title":"Genomic history of human monkey pox infections in the Central African Republic between 2001 and 2018","volume":"11","author":"Berthet","year":"2021","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ygeno.2023.110763_bb0080","doi-asserted-by":"crossref","first-page":"1569","DOI":"10.1038\/s41591-022-01907-y","article-title":"Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus","volume":"28","author":"Isidro","year":"2022","journal-title":"Nat. Med."},{"key":"10.1016\/j.ygeno.2023.110763_bb0085","doi-asserted-by":"crossref","DOI":"10.1016\/j.xinn.2022.100296","article-title":"MPoxVR: a comprehensive genomic resource for monkeypox virus variant surveillance","volume":"3","author":"Ma","year":"2022","journal-title":"The Innovation"},{"key":"10.1016\/j.ygeno.2023.110763_bb0090","doi-asserted-by":"crossref","first-page":"3773","DOI":"10.21105\/joss.03773","article-title":"Nextclade: clade assignment, mutation calling and quality control for viral genomes","volume":"6","author":"Aksamentov","year":"2021","journal-title":"The Journal of Open Source Software"},{"key":"10.1016\/j.ygeno.2023.110763_bb0095","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ygeno.2023.110763_bb0100","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1186\/1743-422X-6-223","article-title":"Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution","volume":"6","author":"Yutin","year":"2009","journal-title":"Virol. J."},{"key":"10.1016\/j.ygeno.2023.110763_bb0105","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-019-1832-y","article-title":"OrthoFinder: phylogenetic orthology inference for comparative genomics","volume":"20","author":"Emms","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0110","series-title":"dplyr, in: useR! Conference","author":"Wickham","year":"2014"},{"key":"10.1016\/j.ygeno.2023.110763_bb0115","series-title":"Venn Diagrams in R with the Vennerable Package","author":"Swinton","year":"2009"},{"key":"10.1016\/j.ygeno.2023.110763_bb0120","series-title":"Package \u2018ggplot2\u2019, Create elegant data visualisations using the grammar of graphics. Version, 2","first-page":"1","author":"Wickham","year":"2016"},{"key":"10.1016\/j.ygeno.2023.110763_bb0125","doi-asserted-by":"crossref","first-page":"5479","DOI":"10.1016\/j.csbj.2021.09.031","article-title":"Genomic analysis of Poxviridae and exploring qualified gene sequences for phylogenetics","volume":"19","author":"Yu","year":"2021","journal-title":"Comput. Struct. Biotechnol. J."},{"key":"10.1016\/j.ygeno.2023.110763_bb0130","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005944","article-title":"MUMmer4: A fast and versatile genome alignment system","volume":"14","author":"Mar\u00e7ais","year":"2018","journal-title":"PLoS Comput. Biol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0135","doi-asserted-by":"crossref","DOI":"10.7717\/peerj-cs.116","article-title":"AliTV\u2014interactive visualization of whole genome comparisons","volume":"3","author":"Ankenbrand","year":"2017","journal-title":"PeerJ Computer Science"},{"key":"10.1016\/j.ygeno.2023.110763_bb0140","doi-asserted-by":"crossref","first-page":"e49","DOI":"10.1093\/nar\/gkr1293","article-title":"MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity","volume":"40","author":"Wang","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0145","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0150","doi-asserted-by":"crossref","first-page":"e15","DOI":"10.1093\/nar\/gku1196","article-title":"Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins","volume":"43","author":"Croucher","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0155","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1093\/nar\/27.2.573","article-title":"Tandem repeats finder: a program to analyze DNA sequences","volume":"27","author":"Benson","year":"1999","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0160","doi-asserted-by":"crossref","first-page":"1861","DOI":"10.1101\/gr.2542904","article-title":"Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes","volume":"14","author":"Warburton","year":"2004","journal-title":"Genome Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0165","series-title":"SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments, biorxiv","author":"Page","year":"2016"},{"key":"10.1016\/j.ygeno.2023.110763_bb0170","series-title":"ggpubr:\u201cggplot2\u201d based publication ready plots","author":"Kassambara","year":"2020"},{"key":"10.1016\/j.ygeno.2023.110763_bb0175","doi-asserted-by":"crossref","first-page":"1639","DOI":"10.1101\/gr.092759.109","article-title":"Circos: an information aesthetic for comparative genomics","volume":"19","author":"Krzywinski","year":"2009","journal-title":"Genome Res."},{"key":"10.1016\/j.ygeno.2023.110763_bb0180","doi-asserted-by":"crossref","first-page":"3690","DOI":"10.1111\/jam.15806","article-title":"Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak","volume":"133","author":"Wassenaar","year":"2022","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0185","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1155\/2012\/524743","article-title":"Orthopoxvirus genes that mediate disease virulence and host tropism","volume":"2012","author":"Shchelkunov","year":"2012","journal-title":"Advances in Virology"},{"key":"10.1016\/j.ygeno.2023.110763_bb0190","doi-asserted-by":"crossref","DOI":"10.1099\/jgv.0.001786","article-title":"Vaccinia virus BTB-Kelch proteins C2 and F3 inhibit NF-\u03baB activation","volume":"103","author":"Zhang","year":"2022","journal-title":"J. Gen. Virol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0195","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1093\/infdis\/jiac298","article-title":"Geographic structuring and divergence time frame of monkeypox virus in the endemic region","volume":"227","author":"Forni","year":"2022","journal-title":"J Infect Dis"},{"key":"10.1016\/j.ygeno.2023.110763_bb0200","first-page":"1","article-title":"Evolution, epidemiology, geographical distribution, and mutational landscape of newly emerging monkeypox virus","author":"Chakraborty","year":"2022","journal-title":"GeroScience"},{"key":"10.1016\/j.ygeno.2023.110763_bb0205","doi-asserted-by":"crossref","first-page":"7590","DOI":"10.1128\/JVI.77.13.7590-7600.2003","article-title":"Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome","volume":"77","author":"Upton","year":"2003","journal-title":"J. Virol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0215","article-title":"Genomic annotation and molecular evolution of monkeypox virus outbreak in 2022","volume":"95","author":"Wang","year":"2022","journal-title":"J. Med. Virol."},{"key":"10.1016\/j.ygeno.2023.110763_bb0220","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/bs.aivir.2018.09.002","article-title":"Evolution of the large nucleocytoplasmic DNA viruses of eukaryotes and convergent origins of viral gigantism","volume":"103","author":"Koonin","year":"2019","journal-title":"Adv. Virus Res."}],"container-title":["Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754323002070?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0888754323002070?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T06:42:25Z","timestamp":1760164945000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0888754323002070"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1]]},"references-count":43,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2024,1]]}},"alternative-id":["S0888754323002070"],"URL":"https:\/\/doi.org\/10.1016\/j.ygeno.2023.110763","relation":{},"ISSN":["0888-7543"],"issn-type":[{"value":"0888-7543","type":"print"}],"subject":[],"published":{"date-parts":[[2024,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genome analysis of the mpox (formerly monkeypox) virus and characterization of core\/variable regions","name":"articletitle","label":"Article Title"},{"value":"Genomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ygeno.2023.110763","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023 Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"110763"}}