{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T06:04:01Z","timestamp":1791180241555,"version":"4.1.0"},"reference-count":48,"publisher":"Elsevier BV","issue":"2","license":[{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2007,11,1]],"date-time":"2007-11-01T00:00:00Z","timestamp":1193875200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100005753","name":"Kungliga Fysiografiska S\u00e4llskapet i Lund","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100005753","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Molecular Phylogenetics and Evolution"],"published-print":{"date-parts":[[2007,11]]},"DOI":"10.1016\/j.ympev.2007.06.018","type":"journal-article","created":{"date-parts":[[2007,7,13]],"date-time":"2007-07-13T07:45:21Z","timestamp":1184312721000},"page":"663-673","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":81,"title":["Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous\u2013Tertiary boundary"],"prefix":"10.1016","volume":"45","author":[{"given":"Jonas","family":"Roos","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ramesh K.","family":"Aggarwal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Axel","family":"Janke","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ympev.2007.06.018_bib1","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1007\/BF02498640","article-title":"Model of amino acid substitution in proteins encoded by mitochondrial DNA","volume":"42","author":"Adachi","year":"1996","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib2","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1007\/BF02202113","article-title":"Pattern and Timing of evolutionary divergencies among Hominoids based on analysis of complete mtDNAs","volume":"43","author":"Arnason","year":"1996","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib3","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1111\/j.1601-5223.2000.00217.x","article-title":"Molecular estimates of primate divergences and new hypotheses for primate dispersal and the origin of modern humans","volume":"133","author":"Arnason","year":"2000","journal-title":"Hereditas"},{"key":"10.1016\/j.ympev.2007.06.018_bib4","doi-asserted-by":"crossref","first-page":"10601","DOI":"10.1073\/pnas.91.22.10601","article-title":"Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe","volume":"91","author":"Aggarwal","year":"1994","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.ympev.2007.06.018_bib5","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1093\/molbev\/msl150","article-title":"Paleontological evidence to date the tree of life","volume":"24","author":"Benton","year":"2007","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib6","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1146\/annurev.earth.31.100901.141308","article-title":"Phylogenetic approaches toward crocodylian history","volume":"31","author":"Brochu","year":"2003","journal-title":"Annu. Rev. Earth Planet. Sci."},{"key":"10.1016\/j.ympev.2007.06.018_bib7","first-page":"564","article-title":"Crocodylian snouts in space and time: phylogenetic approaches toward adaptive radiation","volume":"41","author":"Brochu","year":"2001","journal-title":"Am. Zool."},{"issue":"3","key":"10.1016\/j.ympev.2007.06.018_bib8","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1093\/sysbio\/46.3.479","article-title":"Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis","volume":"46","author":"Brochu","year":"1997","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2007.06.018_bib9","unstructured":"Felsenstein, J., 1993. Phylogenetic Inference Programs (PHYLIP). University of Washington, Seattle, and University Herbarium, University of California, Berkeley."},{"issue":"3","key":"10.1016\/j.ympev.2007.06.018_bib10","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1080\/10635150390197037","article-title":"Combined support for taxic wholesale taxic atavism in gavialine crocodilians","volume":"52","author":"Gatesy","year":"2003","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2007.06.018_bib11","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1006\/mpev.1993.1015","article-title":"Alignment-ambiguous nucleotide site and the exclusion of systematic data","volume":"2","author":"Gatesy","year":"1993","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib12","doi-asserted-by":"crossref","first-page":"669","DOI":"10.1007\/PL00006347","article-title":"The complete mitochondrial genome of Rhea americana and early avian divergences","volume":"46","author":"Harlid","year":"1998","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib13","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1080\/10635150390197028","article-title":"True and false gharials: a nuclear gene phylogeny of crocodylia","volume":"52","author":"Harshman","year":"2003","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2007.06.018_bib14","doi-asserted-by":"crossref","first-page":"998","DOI":"10.1126\/science.283.5404.998","article-title":"A molecular phylogeny of reptiles","volume":"283","author":"Hedges","year":"1999","journal-title":"Science"},{"key":"10.1016\/j.ympev.2007.06.018_bib15","doi-asserted-by":"crossref","first-page":"1632","DOI":"10.1126\/science.2480644","article-title":"RNA editing in plant mitochondria","volume":"246","author":"Hiesel","year":"1989","journal-title":"Science"},{"issue":"4","key":"10.1016\/j.ympev.2007.06.018_bib16","doi-asserted-by":"crossref","first-page":"810","DOI":"10.1093\/molbev\/msi075","article-title":"Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins","volume":"22","author":"Iwabe","year":"2005","journal-title":"Mol. Biol. Evol."},{"issue":"5","key":"10.1016\/j.ympev.2007.06.018_bib17","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1007\/s00239-004-0336-9","article-title":"Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K\/T divergence times for most crocodilians","volume":"61","author":"Janke","year":"2005","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib18","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1098\/rspb.2000.1402","article-title":"The mitochondrial genomes of a lizard (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny","volume":"268","author":"Janke","year":"2001","journal-title":"Proc. Roy. Soc. Lond. B"},{"key":"10.1016\/j.ympev.2007.06.018_bib19","doi-asserted-by":"crossref","first-page":"1266","DOI":"10.1093\/oxfordjournals.molbev.a025736","article-title":"The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)","volume":"14","author":"Janke","year":"1997","journal-title":"Mol. Biol. Evol."},{"issue":"7","key":"10.1016\/j.ympev.2007.06.018_bib20","doi-asserted-by":"crossref","first-page":"1523","DOI":"10.1093\/nar\/21.7.1523","article-title":"Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition","volume":"21","author":"Janke","year":"1993","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ympev.2007.06.018_bib21","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/1471-2148-4-18","article-title":"TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics","volume":"4","author":"Jobb","year":"2004","journal-title":"BMC Evol. Biol."},{"issue":"6","key":"10.1016\/j.ympev.2007.06.018_bib22","doi-asserted-by":"crossref","first-page":"784","DOI":"10.1093\/oxfordjournals.molbev.a026163","article-title":"Complete mitochondrial DNA sequences of the Green turtle and Blue-tailed mole skink: Statistical evidence for Archosaurian affinity of turtles","volume":"16","author":"Kumazawa","year":"1999","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"10.1016\/j.ympev.2007.06.018_bib23","doi-asserted-by":"crossref","first-page":"86","DOI":"10.1007\/BF02101990","article-title":"A new method for calculating evolutionary substitution rates","volume":"20","author":"Lanave","year":"1984","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib24","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1006\/mpev.1999.0640","article-title":"Molecular evidence for a clade of turtles","volume":"13","author":"Mannen","year":"1999","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib25","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.ympev.2006.01.012","article-title":"Are crocodiles really monophyletic?\u2014Evidence for subdivisions from sequence and morphological data","volume":"39","author":"McAliley","year":"2006","journal-title":"Mol. Phylogenet. Evol."},{"issue":"12","key":"10.1016\/j.ympev.2007.06.018_bib26","doi-asserted-by":"crossref","first-page":"4570","DOI":"10.1073\/pnas.0600592103","article-title":"Surprising contribution to aminoacylation and translation of non-Watson\u2013Crick pairs in tRNA","volume":"103","author":"McClain","year":"2006","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.ympev.2007.06.018_bib27","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1002\/bies.20286","article-title":"Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates","volume":"27","author":"M\u00fcller","year":"2005","journal-title":"BioEssays"},{"key":"10.1016\/j.ympev.2007.06.018_bib28","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1016\/j.gene.2004.07.040","article-title":"Marsupial relationships and a timeline for marsupial radiation in South Gondwana","volume":"340","author":"Nilsson","year":"2004","journal-title":"Gene"},{"key":"10.1016\/j.ympev.2007.06.018_bib29","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1093\/bioinformatics\/14.9.817","article-title":"Modeltest: testing the model of DNA substitution","volume":"14","author":"Posada","year":"1998","journal-title":"Bioinformatics"},{"issue":"1","key":"10.1016\/j.ympev.2007.06.018_bib30","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1007\/s00239-004-0010-2","article-title":"The mitochondrial sequences of Heptathela hangzhouensis and Ornithoctonus huwena reveal unique gene arrangements and atypical tRNAs","volume":"60","author":"Qiu","year":"2005","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib31","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1016\/S1055-7903(03)00108-8","article-title":"Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome","volume":"29","author":"Rest","year":"2003","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib32","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1046\/j.1463-6409.2000.00039.x","article-title":"Turtles as diapsid reptiles","volume":"29","author":"Rieppel","year":"1999","journal-title":"Zool. Scr."},{"key":"10.1016\/j.ympev.2007.06.018_bib33","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1080\/03115519608619189","article-title":"A new crocodylian from the Early Eocene of south-eastern Queensland and a preliminary investigation of the phylogenetic relationships of crocodyloids","volume":"20","author":"Salisbury","year":"1996","journal-title":"Alcheringa"},{"key":"10.1016\/j.ympev.2007.06.018_bib34","series-title":"Molecular Cloning, A Laboratory Manual","author":"Sambrook","year":"2001"},{"key":"10.1016\/j.ympev.2007.06.018_bib35","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1093\/oxfordjournals.molbev.a003974","article-title":"Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach","volume":"19","author":"Sanderson","year":"2002","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib36","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1093\/bioinformatics\/18.3.502","article-title":"TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing","volume":"18","author":"Schmidt","year":"2002","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ympev.2007.06.018_bib37","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1016\/j.crpv.2003.07.002","article-title":"Molecular evidence for species level divergence in African Nile crocodiles Crocodylus niloticus (Laurenti, 1786)","volume":"2","author":"Schmitz","year":"2003","journal-title":"Comp. Rendus Palevol."},{"key":"10.1016\/j.ympev.2007.06.018_bib38","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1093\/oxfordjournals.molbev.a026201","article-title":"Multiple comparisons of log-likelihoods with applications to phylogenetic inference","volume":"16","author":"Shimodaira","year":"1999","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib39","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1038\/nsb0894-507","article-title":"Structural compensation in atypical mitochondrial tRNAs","volume":"1","author":"Steinberg","year":"1994","journal-title":"Structural Biology"},{"key":"10.1016\/j.ympev.2007.06.018_bib40","unstructured":"Swofford, D.L., 2003. PAUP* Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts."},{"key":"10.1016\/j.ympev.2007.06.018_bib41","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1080\/10635150290102456","article-title":"Divergence time and evolutionary rate estimation with multilocus data","volume":"51","author":"Thorne","year":"2002","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2007.06.018_bib42","series-title":"Crocodilian Biology and Evolution","first-page":"29","article-title":"DNA sequence alignments and data analysis methods: their effect on the recovery of crocodylian relationships","author":"White","year":"2000"},{"key":"10.1016\/j.ympev.2007.06.018_bib43","doi-asserted-by":"crossref","DOI":"10.1016\/j.ympev.2007.02.005","article-title":"Evidence for placing the False Gharial (Tomistoma schlegelii) into the family Gavialidae; inferences from nuclear gene sequences","author":"Willis","year":"2007","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib44","first-page":"173","article-title":"Animal mitochondrial DNA structure and evolution","volume":"Vol. 141","author":"Wolstenholme","year":"1992"},{"key":"10.1016\/j.ympev.2007.06.018_bib45","unstructured":"Wu, X., Wang, Y., Zhou, K., Zhu, W., Nie, J., Wan, C., Xie, W., 2002. The complete mitochondrial genome sequence of Chinese alligator, AF511507 (unpublished)."},{"key":"10.1016\/j.ympev.2007.06.018_bib46","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1007\/BF00160154","article-title":"Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods","volume":"39","author":"Yang","year":"1994","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib47","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1093\/molbev\/msj024","article-title":"Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds","volume":"23","author":"Yang","year":"2006","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2007.06.018_bib48","doi-asserted-by":"crossref","first-page":"14226","DOI":"10.1073\/pnas.95.24.14226","article-title":"Complete mitochondrial genome suggests diapsid affinities of turtles","volume":"95","author":"Zardoya","year":"1998","journal-title":"Proc. Natl. Acad. Sci. USA"}],"container-title":["Molecular Phylogenetics and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1055790307002229?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1055790307002229?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T12:17:58Z","timestamp":1760962678000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1055790307002229"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,11]]},"references-count":48,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2007,11]]}},"alternative-id":["S1055790307002229"],"URL":"https:\/\/doi.org\/10.1016\/j.ympev.2007.06.018","relation":{},"ISSN":["1055-7903"],"issn-type":[{"value":"1055-7903","type":"print"}],"subject":[],"published":{"date-parts":[[2007,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous\u2013Tertiary boundary","name":"articletitle","label":"Article Title"},{"value":"Molecular Phylogenetics and Evolution","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ympev.2007.06.018","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2007 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}