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Evol."},{"key":"10.1016\/j.ympev.2022.107440_b0685","unstructured":"Swofford, D.L., 2002. PAUP* version 4.0b: Phylogenetic Analysis Using Parsimony (and other methods). Sinauer Associates, Sunderland, Massachusetts."},{"issue":"5","key":"10.1016\/j.ympev.2022.107440_b0690","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1007\/BF00037152","article-title":"Universal primers for amplification of three non-coding regions of chloroplast DNA","volume":"17","author":"Taberlet","year":"1991","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.ympev.2022.107440_b9000","series-title":"The Genus Utricularia - A Taxonomic Monograph","first-page":"736","author":"Taylor","year":"1989"},{"key":"10.1016\/j.ympev.2022.107440_b0695","doi-asserted-by":"crossref","unstructured":"Thiers, B., 2016. Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. 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