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Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0345","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1111\/1755-0998.13265","article-title":"Dsuite - Fast D-statistics and related admixture evidence from VCF files","volume":"21","author":"Malinsky","year":"2021","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.ympev.2026.108735_b0350","doi-asserted-by":"crossref","first-page":"1940","DOI":"10.1038\/s41559-018-0717-x","article-title":"Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow","volume":"2","author":"Malinsky","year":"2018","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0355","first-page":"1","article-title":"Fossil calibration of Magnoliidae, an ancient lineage of angiosperms","volume":"18","author":"Massoni","year":"2015","journal-title":"Palaeontol. 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Ecol."},{"key":"10.1016\/j.ympev.2026.108735_b0430","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1371\/journal.pone.0089543","article-title":"Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic Trees","volume":"9","author":"Rabosky","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.ympev.2026.108735_b0435","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1111\/2041-210X.12199","article-title":"BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees","volume":"5","author":"Rabosky","year":"2014","journal-title":"Methods Ecol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0440","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1093\/sysbio\/syy032","article-title":"Posterior summarization in Bayesian phylogenetics using Tracer 1.7","volume":"67","author":"Rambaut","year":"2018","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0445","first-page":"e2239","article-title":"Descripci\u00f3n morfol\u00f3gica y molecular de un nuevo h\u00edbrido de Persea americana (Lauraceae) del sur del Estado de M\u00e9xico","volume":"131","author":"Reyes-Alem\u00e1n","year":"2024","journal-title":"Acta Bot. Mex."},{"key":"10.1016\/j.ympev.2026.108735_b0450","first-page":"1e148","article-title":"Anatomie des sekundaren xylems und der rinde der Lauraceae","volume":"5","author":"Richter","year":"1981","journal-title":"Sonderb. Naturw. Vereins Hamburg"},{"key":"10.1016\/j.ympev.2026.108735_b0455","first-page":"65","article-title":"Phylogenetic consequences of cytoplasmic gene flow in plants","volume":"5","author":"Rieseberg","year":"1991","journal-title":"Evol. Trends Plants"},{"key":"10.1016\/j.ympev.2026.108735_b0460","series-title":"The Families and Genera of Vascular Plants","first-page":"366","article-title":"Lauraceae","author":"Rohwer","year":"1993"},{"key":"10.1016\/j.ympev.2026.108735_b0465","doi-asserted-by":"crossref","first-page":"1261","DOI":"10.1093\/molbev\/msu061","article-title":"Novel information theory-based measures for quantifying incongruence among phylogenetic trees","volume":"31","author":"Salichos","year":"2014","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0470","doi-asserted-by":"crossref","first-page":"1654","DOI":"10.1093\/molbev\/msw079","article-title":"Fast coalescent-based computation of local branch support from quartet frequencies","volume":"33","author":"Sayyari","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0475","doi-asserted-by":"crossref","first-page":"132","DOI":"10.3390\/genes9030132","article-title":"Testing for polytomies in phylogenetic species trees using quartet frequencies","volume":"9","author":"Sayyari","year":"2018","journal-title":"Genes"},{"key":"10.1016\/j.ympev.2026.108735_b0480","doi-asserted-by":"crossref","first-page":"863","DOI":"10.1093\/sysbio\/syaf027","article-title":"Rampant reticulation in a rapid radiation of tropical trees -insights from Inga (Fabaceae)","volume":"6","author":"Schley","year":"2025","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0485","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1093\/botlinnean\/boab070","article-title":"Hybridization: a \u2018double-edged sword\u2019 for Neotropical plant diversity","volume":"199","author":"Schley","year":"2022","journal-title":"Bot. J. Linn. Soc."},{"key":"10.1016\/j.ympev.2026.108735_b0490","doi-asserted-by":"crossref","first-page":"1212","DOI":"10.1111\/2041-210X.12760","article-title":"Intertwining phylogenetic trees and networks","volume":"8","author":"Schliep","year":"2017","journal-title":"Methods Ecol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0495","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1016\/j.tree.2004.01.003","article-title":"Hybridization and adaptive radiation","volume":"19","author":"Seehausen","year":"2004","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0500","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhae330","article-title":"Phytop: a tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL","volume":"12","author":"Shang","year":"2025","journal-title":"Hortic. Res."},{"key":"10.1016\/j.ympev.2026.108735_b0505","doi-asserted-by":"crossref","first-page":"e191","DOI":"10.1002\/imt2.191","article-title":"SeqKit2: A swiss army knife for sequence and alignment processing","volume":"3","author":"Shen","year":"2024","journal-title":"iMeta"},{"key":"10.1016\/j.ympev.2026.108735_b0510","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1038\/s41559-017-0126","article-title":"Contentious relationships in phylogenomic studies can be driven by a handful of genes","volume":"1","author":"Shen","year":"2017","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0515","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1093\/sysbio\/syab011","article-title":"Dissecting incongruence between concatenation- and quartet-based approaches in phylogenomic data","volume":"70","author":"Shen","year":"2021","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0520","doi-asserted-by":"crossref","unstructured":"Smith, M.R., 2019. Quartet: comparison of phylogenetic trees using quartet and bipartition measures. Doi: 10.5281\/zenodo.2536318.","DOI":"10.32614\/CRAN.package.Quartet"},{"key":"10.1016\/j.ympev.2026.108735_b0525","article-title":"So many genes, so little time: a practical approach to divergence-time estimation in the genomic era","volume":"13","author":"Smith","year":"2018","journal-title":"PLoS One"},{"key":"10.1016\/j.ympev.2026.108735_b0530","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1186\/s12862-015-0423-0","article-title":"Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants","volume":"15","author":"Smith","year":"2015","journal-title":"BMC Evol. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0535","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1005896","article-title":"Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting","volume":"12","author":"Sol\u00eds-Lemus","year":"2016","journal-title":"PLoS Genet."},{"key":"10.1016\/j.ympev.2026.108735_b0540","doi-asserted-by":"crossref","first-page":"3292","DOI":"10.1093\/molbev\/msx235","article-title":"PhyloNetworks: a package for phylogenetic networks","volume":"34","author":"Sol\u00eds-Lemus","year":"2017","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0545","article-title":"Darwin review: angiosperm phylogeny and evolutionary radiations","volume":"286","author":"Soltis","year":"2019","journal-title":"Proc. R. Soc. B Biol. Sci."},{"key":"10.1016\/j.ympev.2026.108735_b0550","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1146\/annurev.arplant.043008.092039","article-title":"The role of hybridization in plant speciation","volume":"60","author":"Soltis","year":"2009","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0555","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1186\/s12915-024-02040-7","article-title":"New insights into the phylogenetic relationships within the Lauraceae from mitogenomes","volume":"22","author":"Song","year":"2024","journal-title":"BMC Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0560","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1111\/jse.12536","article-title":"Plastid phylogenomics improve phylogenetic resolution in the Lauraceae","volume":"58","author":"Song","year":"2020","journal-title":"J. Syst. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0565","series-title":"Evergreen Broad-Leaved Forests in China: Classification, Ecology, Conservation","author":"Song","year":"2013"},{"key":"10.1016\/j.ympev.2026.108735_b0570","doi-asserted-by":"crossref","first-page":"1220","DOI":"10.1093\/sysbio\/syad042","article-title":"Phylogenomics reveals patterns of ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives","volume":"72","author":"Sanderson","year":"2023","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0575","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","author":"Stamatakis","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ympev.2026.108735_b0580","doi-asserted-by":"crossref","first-page":"834","DOI":"10.1038\/s41576-023-00620-x","article-title":"Incongruence in the phylogenomics era","volume":"24","author":"Steenwyk","year":"2023","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.ympev.2026.108735_b0585","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1111\/tpj.16142","article-title":"Deep reticulation: the long legacy of hybridization in vascular plant evolution","volume":"114","author":"Stull","year":"2023","journal-title":"Plant J."},{"key":"10.1016\/j.ympev.2026.108735_b0590","doi-asserted-by":"crossref","first-page":"790","DOI":"10.1002\/ajb2.1468","article-title":"Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages","volume":"107","author":"Stull","year":"2020","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.ympev.2026.108735_b0595","doi-asserted-by":"crossref","first-page":"1790","DOI":"10.1111\/1365-2745.13905","article-title":"Flowering overlap and floral trait similarity help explain the structure of pollination networks","volume":"110","author":"Su\u00e1rez-Mari\u00f1o","year":"2022","journal-title":"J. Ecol."},{"key":"10.1016\/j.ympev.2026.108735_b0600","doi-asserted-by":"crossref","first-page":"1569","DOI":"10.1093\/bioinformatics\/btq228","article-title":"DendroPy: a Python library for phylogenetic computing","volume":"26","author":"Sukumaran","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ympev.2026.108735_b0605","doi-asserted-by":"crossref","first-page":"3333","DOI":"10.1038\/s41467-020-17116-5","article-title":"Recent accelerated diversification in rosids occurred outside the tropics","volume":"11","author":"Sun","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.ympev.2026.108735_b0610","doi-asserted-by":"crossref","first-page":"391","DOI":"10.3390\/biology10050391","article-title":"Research progress in plant molecular systematics of Lauraceae","volume":"10","author":"Tian","year":"2021","journal-title":"Biology-Basel"},{"key":"10.1016\/j.ympev.2026.108735_b0615","doi-asserted-by":"crossref","first-page":"W6","DOI":"10.1093\/nar\/gkx391","article-title":"GeSeq \u2013 versatile and accurate annotation of organelle genomes","volume":"45","author":"Tillich","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ympev.2026.108735_b0620","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1093\/botlinnean\/boac042","article-title":"Biotic and abiotic factors in promoting the starting point of hybridization in the Neotropical flora: implications for conservation in a changing world","volume":"200","author":"Turchetto","year":"2022","journal-title":"Bot. J. Linn. Soc."},{"key":"10.1016\/j.ympev.2026.108735_b0625","doi-asserted-by":"crossref","DOI":"10.1016\/j.cretres.2021.105067","article-title":"New fossils shed light on the late cretaceous terrestrial community in the Caribbean and the first American Biotic Interchange","volume":"130","author":"Vi\u00f1ola-L\u00f3pez","year":"2022","journal-title":"Cretac. Res."},{"key":"10.1016\/j.ympev.2026.108735_b0630","doi-asserted-by":"crossref","DOI":"10.1016\/j.ympev.2022.107485","article-title":"Incomplete lineage sorting and local extinction shaped the complex evolutionary history of the Paleogene relict conifer genus, Chamaecyparis (Cupressaceae)","volume":"172","author":"Wang","year":"2022","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0635","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1080\/08912963.2017.1379517","article-title":"New fossil leaves and fruits of Lauraceae from the Middle Miocene of Fujian, southeastern China differentiated using a cluster analysis","volume":"31","author":"Wang","year":"2019","journal-title":"Hist. Biol."},{"key":"10.1016\/j.ympev.2026.108735_b0640","doi-asserted-by":"crossref","first-page":"1987","DOI":"10.1038\/s41467-022-29643-4","article-title":"Genomic evidence for homoploid hybrid speciation between ancestors of two different genera","volume":"13","author":"Wang","year":"2022","journal-title":"Nat. Commun."},{"key":"10.1016\/j.ympev.2026.108735_b0645","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1007\/s00606-010-0359-1","article-title":"Phylogeny of the Southeast asian endemic genus Neocinnamomum H. Liu (Lauraceae)","volume":"290","author":"Wang","year":"2010","journal-title":"Plant Syst. Evol."},{"key":"10.1016\/j.ympev.2026.108735_b0650","doi-asserted-by":"crossref","first-page":"1383","DOI":"10.1126\/science.aba6853","article-title":"An astronomically dated record of Earth\u2019s climate and its predictability over the last 66 million years","volume":"369","author":"Westerhold","year":"2020","journal-title":"Science"},{"key":"10.1016\/j.ympev.2026.108735_b0655","series-title":"ggplot2: Elegant Graphics for Data Analysis","author":"Wickham","year":"2016"},{"key":"10.1016\/j.ympev.2026.108735_b0660","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1111\/j.1467-9868.2010.00749.x","article-title":"Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models","volume":"73","author":"Wood","year":"2011","journal-title":"J. r. Stat. Soc. Ser. B-Stat. 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