{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,5,9]],"date-time":"2024-05-09T14:13:43Z","timestamp":1715264023609},"reference-count":50,"publisher":"Elsevier","isbn-type":[{"value":"9780128148495","type":"print"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1016\/b978-0-12-814849-5.00025-3","type":"book-chapter","created":{"date-parts":[[2018,9,28]],"date-time":"2018-09-28T20:45:58Z","timestamp":1538167558000},"page":"451-457","source":"Crossref","is-referenced-by-count":0,"title":["Linking the Environmental Microbial Diversity and Antibiotic Resistance"],"prefix":"10.1016","author":[{"given":"Juliana C.","family":"Pinheiro","sequence":"first","affiliation":[]},{"given":"Lays T.","family":"dos Santos","sequence":"additional","affiliation":[]},{"given":"Isabel","family":"Henriques","sequence":"additional","affiliation":[]},{"given":"Artur","family":"Silva","sequence":"additional","affiliation":[]},{"given":"Rafael A.","family":"Bara\u00fana","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"issue":"2","key":"10.1016\/B978-0-12-814849-5.00025-3_bib43","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1111\/j.1574-6968.2007.00757.x","article-title":"Evolution and ecology if antibiotic resistance genes","volume":"271","author":"Aminov","year":"2007","journal-title":"FEMS Microbiol. Lett."},{"issue":"7","key":"10.1016\/B978-0-12-814849-5.00025-3_bib45","doi-asserted-by":"crossref","first-page":"741","DOI":"10.1590\/S0074-02762006000700006","article-title":"Increased resistance to first-line agents among bacterial pathogens isolated from urinary tract infections in Latin America: time for local guidelines?","volume":"101","author":"Andrade","year":"2006","journal-title":"Mem. Inst. Oswaldo Cruz"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib34","unstructured":"Baas Becking, L.G.M., 1934. Geobiologie of inleiding tot de milieukunde. W.P. Van Stockum & Zoon, Den Haag."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib16","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1016\/j.copbio.2008.05.006","article-title":"Antibiotics and antibiotic resistance in water environments","volume":"19","author":"Baquero","year":"2008","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib2","article-title":"Environmental dissemination of antibiotic resistance genes and correlation to anthropogenic contamination with antibiotics","volume":"5","author":"Berglund","year":"2015","journal-title":"Infect. Ecol. Epidemiol."},{"issue":"7","key":"10.1016\/B978-0-12-814849-5.00025-3_bib21","doi-asserted-by":"crossref","first-page":"2647","DOI":"10.1128\/AEM.63.7.2647-2653.1997","article-title":"Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation","volume":"63","author":"Borneman","year":"1997","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib48","series-title":"Document Approved Standard M100\u2013S27","article-title":"Performance standard for antimicrobial susceptibility testing","author":"Clinical and Laboratory Standards Institute","year":"2017"},{"issue":"2","key":"10.1016\/B978-0-12-814849-5.00025-3_bib46","doi-asserted-by":"crossref","first-page":"786","DOI":"10.1073\/pnas.012399899","article-title":"Chemical warfare between microbes promotes biodiversity","volume":"99","author":"Cz\u00e1r\u00e1n","year":"2002","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"issue":"5872","key":"10.1016\/B978-0-12-814849-5.00025-3_bib17","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1126\/science.1155157","article-title":"Bacteria subsisting on antibiotics","volume":"320","author":"Dantas","year":"2008","journal-title":"Science"},{"issue":"5157","key":"10.1016\/B978-0-12-814849-5.00025-3_bib22","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1126\/science.8153624","article-title":"Inactivation of antibiotics and the dissemination of resistance genes","volume":"264","author":"Davies","year":"1994","journal-title":"Science"},{"issue":"4","key":"10.1016\/B978-0-12-814849-5.00025-3_bib41","doi-asserted-by":"crossref","first-page":"755","DOI":"10.1111\/j.1462-2920.2006.01017.x","article-title":"\u2018Everything is everywhere, but, the environment selects\u2019; what did Baas Becking and Beijerinck really say?","volume":"8","author":"De Wit","year":"2006","journal-title":"Environ. Microbiol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib15","unstructured":"European Centre for Disease Prevention and Control, 2018. \u27e8https:\/\/ecdc.europa.eu\/en\/home\u27e9 (accessed 03.03.2018)."},{"issue":"3","key":"10.1016\/B978-0-12-814849-5.00025-3_bib1","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1016\/S0732-8893(02)00470-4","article-title":"Urinary tract infection trends in Latin American hospitals: report from the SENTRY antimicrobial surveillance program (1997\u20132000)","volume":"44","author":"Gales","year":"2002","journal-title":"Diagn. Microbiol. Infect. Dis."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib18","unstructured":"Genomes Online Database (GOLD), 2018. \u27e8https:\/\/gold.jgi.doe.gov\/statistics\u27e9 (accessed 17.02.2018)."},{"issue":"8","key":"10.1016\/B978-0-12-814849-5.00025-3_bib42","doi-asserted-by":"crossref","first-page":"e23785","DOI":"10.1371\/journal.pone.0023785","article-title":"Metagenomics of the water column in the pristine upper course of the Amazon River","volume":"6","author":"Ghai","year":"2011","journal-title":"PLoS ONE"},{"issue":"6","key":"10.1016\/B978-0-12-814849-5.00025-3_bib39","doi-asserted-by":"crossref","first-page":"1269","DOI":"10.1038\/ismej.2014.226","article-title":"Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution","volume":"9","author":"Gillings","year":"2015","journal-title":"ISME J."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib9","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1007\/s00248-011-9906-8","article-title":"Microbial diversity of an anoxic zone of a hydroelectric power station reservoir in Brazilian Amazonia","volume":"62","author":"Gra\u00e7as","year":"2011","journal-title":"Microb. Ecol."},{"issue":"2","key":"10.1016\/B978-0-12-814849-5.00025-3_bib14","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1590\/S1517-83822012000200032","article-title":"Comparison of thermotolerant coliforms and Escherichia coli densities in freshwater bodies","volume":"43","author":"Hachich","year":"2012","journal-title":"Braz. J. Microbiol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib23","doi-asserted-by":"crossref","first-page":"R245","DOI":"10.1016\/S1074-5521(98)90108-9","article-title":"Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products","volume":"5","author":"Handelsman","year":"1998","journal-title":"Chem. Biol."},{"issue":"10","key":"10.1016\/B978-0-12-814849-5.00025-3_bib20","doi-asserted-by":"crossref","first-page":"938","DOI":"10.1016\/j.resmic.2006.09.003","article-title":"Occurrence and diversity of integrons and beta-lactamase genes among ampicillin-resistant isolates from estuarine waters","volume":"157","author":"Henriques","year":"2006","journal-title":"Res. Microbiol."},{"issue":"9","key":"10.1016\/B978-0-12-814849-5.00025-3_bib4","doi-asserted-by":"crossref","first-page":"3045","DOI":"10.1128\/AAC.46.9.3045-3049.2002","article-title":"\u03b2-lactamases of Kluyvera ascorbata, probable progenitors of some plasmid-encoded CTX-M types","volume":"46","author":"Humeniuk","year":"2002","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib44","doi-asserted-by":"crossref","first-page":"691","DOI":"10.1016\/S0045-6535(99)00438-5","article-title":"Drugs in the environment","volume":"40","author":"Jorgensen","year":"2000","journal-title":"Chemosphere"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib25","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1038\/nrmicro818","article-title":"Pathogenic Escherichia coli","volume":"2","author":"Kaper","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"issue":"7553","key":"10.1016\/B978-0-12-814849-5.00025-3_bib13","doi-asserted-by":"crossref","first-page":"516","DOI":"10.1038\/nature14485","article-title":"Counteraction of antibiotic production and degradation stabilizes microbial communities","volume":"521","author":"Kelsic","year":"2015","journal-title":"Nature"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib19","doi-asserted-by":"crossref","first-page":"981","DOI":"10.1016\/j.envpol.2016.11.059","article-title":"Exploring the contribution of bacteriophages to antibiotic resistance","volume":"220","author":"Lekunberri","year":"2017","journal-title":"Environ. Pollut."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib35","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/j.gdata.2016.11.015","article-title":"Metagenome sequencing of the microbial community of two Brazilian anthropogenic Amazon dark earth sites, Brazil","volume":"10","author":"Lemos","year":"2016","journal-title":"Genomics Data"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib38","doi-asserted-by":"crossref","DOI":"10.1186\/s12866-016-0798-0","article-title":"Multidrug resistant Pseudomonas aeruginosa survey in a stream receiving effluents from ineffective wastewater hospital plants","volume":"16","author":"Magalh\u00e3es","year":"2016","journal-title":"BMC Microbiol."},{"issue":"6","key":"10.1016\/B978-0-12-814849-5.00025-3_bib8","doi-asserted-by":"crossref","first-page":"470","DOI":"10.3855\/jidc.1456","article-title":"Genotypes and cephalosporin susceptibility in extended-spectrum beta-lactamase producing enterobacteriaceae in the community","volume":"6","author":"Maina","year":"2012","journal-title":"J. Infect. Dev. Countries"},{"issue":"1\u20132","key":"10.1016\/B978-0-12-814849-5.00025-3_bib36","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1016\/j.vetmic.2012.12.011","article-title":"Change of integrons over time in Escherichia coli isolates recovered from healthy pigs and chickens","volume":"163","author":"Marchant","year":"2013","journal-title":"Vet. Microbiol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib11","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/j.watres.2014.05.006","article-title":"Characterization of ciprofloxacin-resistant isolates from a wastewater treatment plant and its receiving river","volume":"61","author":"Marti","year":"2014","journal-title":"Water Res."},{"issue":"1667","key":"10.1016\/B978-0-12-814849-5.00025-3_bib30","doi-asserted-by":"crossref","first-page":"2521","DOI":"10.1098\/rspb.2009.0320","article-title":"The role of natural environments in the evolution of resistance traits in pathogenic bacteria","volume":"276","author":"Mart\u00ednez","year":"2009","journal-title":"Proc. Biol. Sci."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib29","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1038\/nrmicro3399","article-title":"What is a resistance gene? Ranking risk in resistomes","volume":"13","author":"Mart\u00ednez","year":"2015","journal-title":"Nat. Rev. Microbiol."},{"issue":"6","key":"10.1016\/B978-0-12-814849-5.00025-3_bib33","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1111\/mec.14011","article-title":"Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms","volume":"26","author":"Meyer","year":"2017","journal-title":"Mol. Ecol."},{"issue":"3","key":"10.1016\/B978-0-12-814849-5.00025-3_bib31","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1073\/pnas.1220608110","article-title":"Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil communities","volume":"110","author":"Rodrigues","year":"2013","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib7","doi-asserted-by":"crossref","first-page":"e01450","DOI":"10.1128\/genomeA.01450-16","article-title":"Metagenome sequencing of Prokaryotic microbiota collected from rivers in the upper Amazon basin","volume":"5","author":"Santos-J\u00fanior","year":"2017","journal-title":"Genome Announc."},{"issue":"17","key":"10.1016\/B978-0-12-814849-5.00025-3_bib3","article-title":"The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume","volume":"2","author":"Satinsky","year":"2010","journal-title":"Microbiome"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib6","unstructured":"Schwabe, C.W., 1984. Veterinary Medicine and Human Health. Williams & Wilkins, Baltimore, USA."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib49","doi-asserted-by":"crossref","first-page":"1028","DOI":"10.1016\/j.scitotenv.2018.05.229","article-title":"Fate of cefotaxime-resistant Enterobacteriaceae and ESBL-producers over a full-scale wastewater treatment process with UV disinfection","volume":"639","author":"Silva","year":"2018","journal-title":"Sci. Total Environ."},{"issue":"4","key":"10.1016\/B978-0-12-814849-5.00025-3_bib50","doi-asserted-by":"crossref","first-page":"879","DOI":"10.1128\/AAC.42.4.879","article-title":"Discriminatory detection of inhibitory-resistant β-lactamases in Escherichia coli by single-strand conformation polymorphism-PCR","volume":"42","author":"Speldooren","year":"1998","journal-title":"Antimicrob. Agents Chemother"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib37","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1016\/j.watres.2013.09.021","article-title":"Co-resistance to different classes of antibiotics among ESBL-producers from aquatic ecosystems","volume":"48","author":"Tac\u00e3o","year":"2014","journal-title":"Water Res."},{"issue":"3","key":"10.1016\/B978-0-12-814849-5.00025-3_bib40","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/nrmicro2298","article-title":"The population genetics of commensal Escherichia coli","volume":"8","author":"Tenaillon","year":"2010","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib12","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1007\/978-1-4684-7612-5_11","article-title":"Microbial plasticity. The relevance to microbial ecology","volume":"11","author":"Terzaghi","year":"1990","journal-title":"Adv. Microb. Ecol."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib28","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1038\/ismej.2010.80","article-title":"Survival of Escherichia coli in the environment: fundamental and public health aspects","volume":"5","author":"Van Elsas","year":"2011","journal-title":"ISME J."},{"issue":"5667","key":"10.1016\/B978-0-12-814849-5.00025-3_bib27","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1126\/science.1093857","article-title":"Environmental genome shotgun sequencing of the Sargasso Sea","volume":"304","author":"Venter","year":"2005","journal-title":"Science"},{"issue":"7","key":"10.1016\/B978-0-12-814849-5.00025-3_bib32","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1016\/j.toxicon.2005.02.008","article-title":"Toxic cyanobacteria and microcystin concentrations in a public water supply reservoir in the Brazilian Amazonia region","volume":"45","author":"Vieira","year":"2005","journal-title":"Toxicon"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib5","doi-asserted-by":"crossref","first-page":"1126","DOI":"10.1126\/science.1133420","article-title":"Quantitative phylogenetic assessment of microbial communities in diverse environments","volume":"315","author":"Von Mering","year":"2007","journal-title":"Science"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib10","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1038\/345063a0","article-title":"16S rRNA sequences reveal numerous uncultured microorganisms in a natural community","volume":"345","author":"Ward","year":"1990","journal-title":"Nature"},{"key":"10.1016\/B978-0-12-814849-5.00025-3_bib47","doi-asserted-by":"crossref","first-page":"6578","DOI":"10.1073\/pnas.95.12.6578","article-title":"Prokaryotes: the unseen majority","volume":"95","author":"Whitman","year":"1998","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"issue":"3\u20134","key":"10.1016\/B978-0-12-814849-5.00025-3_bib24","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1016\/j.prevetmed.2010.07.003","article-title":"From \u201cone medicine\u201d to \u201cone health\u201d and systemic approaches to health and well-being","volume":"101","author":"Zinsstag","year":"2011","journal-title":"Prev. Vet. Med."},{"key":"10.1016\/B978-0-12-814849-5.00025-3_fur1","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1111\/1574-6968.12332","article-title":"Discovery of two novel \u03b2-glucosidases from an Amazon soil metagenomic library","volume":"351","author":"Bergmann","year":"2014","journal-title":"FEMS Microbiol. Lett."}],"container-title":["Microbial Diversity in the Genomic Era"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:B9780128148495000253?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:B9780128148495000253?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,11,11]],"date-time":"2020-11-11T09:48:17Z","timestamp":1605088097000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/B9780128148495000253"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9780128148495"],"references-count":50,"URL":"https:\/\/doi.org\/10.1016\/b978-0-12-814849-5.00025-3","relation":{},"subject":[],"published":{"date-parts":[[2019]]}}}