{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,4]],"date-time":"2026-03-04T05:53:28Z","timestamp":1772603608963,"version":"3.50.1"},"reference-count":52,"publisher":"Cambridge University Press (CUP)","license":[{"start":{"date-parts":[[2024,9,18]],"date-time":"2024-09-18T00:00:00Z","timestamp":1726617600000},"content-version":"unspecified","delay-in-days":261,"URL":"https:\/\/www.cambridge.org\/core\/terms"}],"content-domain":{"domain":["cambridge.org"],"crossmark-restriction":true},"short-container-title":["Ex. Agric."],"published-print":{"date-parts":[[2024]]},"abstract":"<jats:title>Summary<\/jats:title>\n\t  <jats:p>The aim of this work was to compare gas exchanges from leaf to whole plant scales, in two Ethiopian accessions (\u2018E083\u2019 and \u2018E027\u2019), and two bred cultivars (Iapar 59 and Catua\u00ed 99) of Arabica coffee (<jats:italic>Coffea arabica<\/jats:italic> L.) cultivated under irrigated and rainfed conditions. Variations in gas exchanges were evaluated over four phenophases (leaf expansion \u2013 BE1 and BE2, and berry harvesting \u2013 BH1 and BH2), covering the first two production years in the coffee life cycle. We addressed the following questions: Are gas exchanges modified by water availability at leaf and\/or plant scales? Do bred cultivars and wild accessions differ in their physiological responses to water availability and phenophases? Photosynthesis (<jats:italic>A<\/jats:italic>), stomatal conductance (<jats:italic>g<\/jats:italic><jats:sub>s<\/jats:sub>), and transpiration (<jats:italic>E<\/jats:italic>) were measured on the recently fully expanded leaves at the upper canopy stratum. The functional-structural plant modelling (FSPM) was used to integrate <jats:italic>A<\/jats:italic> at whole plant photosynthesis (<jats:italic>A<\/jats:italic>\u201d<jats:sub>p<\/jats:sub>), based on 3D virtual trees constructed under VPlants modelling platform. Despite high <jats:italic>A<\/jats:italic> values of \u2018E083\u2019 overall phenophases, a strong decline in <jats:italic>A<\/jats:italic>\u201d<jats:sub>p<\/jats:sub> under rainfed condition was observed due to lower plant leaf area as compared to irrigated condition. Catua\u00ed 99 and \u2018E083\u2019 were more sensitive to drought than Iapar 59 and \u2018E027\u2019, considering photosynthesis at leaf and plant scales. At the last BH2 phenophase, <jats:italic>A<\/jats:italic>, <jats:italic>g<\/jats:italic><jats:sub>s<\/jats:sub>, <jats:italic>E,<\/jats:italic> and carboxylation efficiency were similar between irrigated and rainfed conditions for all genotypes, suggesting some acclimation of leaf gas exchange to the environment. However, <jats:italic>A<\/jats:italic>\u201d<jats:sub>p<\/jats:sub> benefited by water management in all phenophases as plant leaf area increased. These findings revealed the need to develop methodologies for structural and functional analyses at plant scale, an important step towards the realistic responses of plants and orchards to the surrounding environment.<\/jats:p>","DOI":"10.1017\/s0014479724000164","type":"journal-article","created":{"date-parts":[[2024,9,18]],"date-time":"2024-09-18T09:11:41Z","timestamp":1726650701000},"update-policy":"https:\/\/doi.org\/10.1017\/policypage","source":"Crossref","is-referenced-by-count":5,"title":["Drought responses in <i>Coffea arabica<\/i> as affected by genotype and phenophase. II \u2013 photosynthesis at leaf and plant scales"],"prefix":"10.1017","volume":"60","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2068-8821","authenticated-orcid":false,"given":"Miroslava","family":"Rakocevic","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4848-2745","authenticated-orcid":false,"given":"Evelyne","family":"Costes","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1329-1084","authenticated-orcid":false,"given":"Eliemar","family":"Campostrini","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7639-7214","authenticated-orcid":false,"given":"Jos\u00e9 Cochicho","family":"Ramalho","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1148-6777","authenticated-orcid":false,"given":"Rafael Vasconcelos","family":"Ribeiro","sequence":"additional","affiliation":[]}],"member":"56","published-online":{"date-parts":[[2024,9,18]]},"reference":[{"key":"S0014479724000164_ref30","doi-asserted-by":"crossref","first-page":"389","DOI":"10.25186\/cs.v12i3.1314","article-title":"Photosynthetic limitations in leaves of Arabic coffee promoted by the water deficit","volume":"12","author":"Peloso","year":"2017","journal-title":"Coffee Science"},{"key":"S0014479724000164_ref32","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.gmod.2008.10.001","article-title":"PlantGL: A Python\u2013based geometric library for 3D plant modelling at different scales","volume":"71","author":"Pradal","year":"2009","journal-title":"Graphical Models"},{"key":"S0014479724000164_ref4","doi-asserted-by":"crossref","first-page":"884","DOI":"10.1016\/j.plaphy.2008.05.005","article-title":"Limitations to photosynthesis in coffee leaves from different canopy positions","volume":"46","author":"Araujo","year":"2008","journal-title":"Plant Physiology and Biochemistry"},{"key":"S0014479724000164_ref44","doi-asserted-by":"crossref","first-page":"e7","DOI":"10.1017\/S0014479724000036","article-title":"Drought responses in Coffea arabica as affected by genotype and phenophase. I \u2013 leaf distribution and branching","volume":"60","author":"Rakocevic","year":"2024","journal-title":"Experimental Agriculture"},{"key":"S0014479724000164_ref49","doi-asserted-by":"crossref","first-page":"708","DOI":"10.1093\/treephys\/tpaa158","article-title":"Intrinsic non\u2013stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. can be strengthened by elevated air CO2","volume":"41","author":"Semedo","year":"2021","journal-title":"Tree Physiology"},{"key":"S0014479724000164_ref46","doi-asserted-by":"crossref","first-page":"e0198694","DOI":"10.1371\/journal.pone.0198694","article-title":"Stress cross\u2013response of the antioxidative system promoted by superimposed drought and cold conditions in Coffea spp","volume":"13","author":"Ramalho","year":"2018","journal-title":"PloS ONE"},{"key":"S0014479724000164_ref7","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.3390\/agriculture13091754","article-title":"Unraveling drought tolerance and sensitivity in coffee genotypes: insights from seed traits, germination, and growth-physiological responses","volume":"13","author":"Chekol","year":"2023","journal-title":"Agriculture"},{"key":"S0014479724000164_ref42","doi-asserted-by":"crossref","first-page":"215","DOI":"10.3390\/horticulturae9020215","article-title":"Variation in yield, berry distribution and chemical attributes of Coffea arabica beans among the canopy strata of four genotypes cultivated under contrasted water regimes","volume":"9","author":"Rakocevic","year":"2023","journal-title":"Horticulturae"},{"key":"S0014479724000164_ref9","unstructured":"Cheserek, J.J. and Gichimu, B.M. (2012) Drought and heat tolerance in coffee: a review. International Research Journal of Agricultural Science and Soil Science 2, 498\u2013501. https:\/\/www.interesjournals.org\/articles\/drought\u2013and\u2013heat\u2013tolerance\u2013in\u2013coffee\u2013a\u2013review.pdf"},{"key":"S0014479724000164_ref18","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1590\/S1677-04202006000100016","article-title":"Genetics of coffee quality","volume":"18","author":"Leroy","year":"2006","journal-title":"Brazilian Journal of Plant Physiology"},{"key":"S0014479724000164_ref15","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1590\/1984-70332018v18n4p69","article-title":"Alcides Carvalho and the selection of Catua\u00ed cultivar: interpreting the past and drawing lessons for the future","volume":"18","author":"Guerreiro\u2013Filho","year":"2018","journal-title":"Crop Breeding and Applied Biotechnology"},{"key":"S0014479724000164_ref28","doi-asserted-by":"crossref","first-page":"108145","DOI":"10.1016\/j.plaphy.2023.108145","article-title":"Carbon gain is coordinated with enhanced stomatal conductance and hydraulic architecture in coffee plants acclimated to elevated [CO2]: The interplay with irradiance supply","volume":"204","author":"Oliveira","year":"2023","journal-title":"Plant Physiology and Biochemistry"},{"key":"S0014479724000164_ref12","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1007\/s10584-018-2346-4","article-title":"Why could the coffee crop endure climate change and global warming to a greater extent than previously estimated?","volume":"152","author":"DaMatta","year":"2019","journal-title":"Climatic Change"},{"key":"S0014479724000164_ref16","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1186\/s40677-015-0031-8","article-title":"Impact of climate change on the severity, duration, and frequency of drought in a semi-arid agricultural basin","volume":"2","author":"Hosseinizadeh","year":"2015","journal-title":"Geoenvironmental Disasters"},{"key":"S0014479724000164_ref25","first-page":"128","volume-title":"Fenologia do cafeeiro: condi\u00e7\u00f5es agrometeorol\u00f3gicas e balan\u00e7o h\u00eddrico do ano agr\u00edcola 2004\u20132005","author":"Meireles","year":"2009"},{"key":"S0014479724000164_ref40","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1071\/FP20298","article-title":"Leaf gas exchange and bean quality fluctuations over the whole canopy vertical profile of Arabic coffee cultivated under elevated CO2","volume":"48","author":"Rakocevic","year":"2021","journal-title":"Functional Plant Biology"},{"key":"S0014479724000164_ref41","doi-asserted-by":"crossref","first-page":"E30","DOI":"10.1017\/S0014479722000266","article-title":"High phosphorus supply enhances leaf gas exchange and growth of young Arabica coffee plants under water deficit","volume":"58","author":"Rakocevic","year":"2022","journal-title":"Experimental Agriculture"},{"key":"S0014479724000164_ref1","doi-asserted-by":"crossref","first-page":"E13","DOI":"10.1017\/S001447972300011X","article-title":"Kaolin particle film mitigates supra\u2013optimal temperature stress effects at leaf scale and increases bean size and productivity of Coffea canephora","volume":"59","author":"Abreu","year":"2023","journal-title":"Experimental Agriculture"},{"key":"S0014479724000164_ref21","doi-asserted-by":"crossref","first-page":"1905","DOI":"10.1175\/JAS-D-21-0172.1","article-title":"Water lifting and outflow gain of kinetic energy in tropical cyclones","volume":"80","author":"Makarieva","year":"2023","journal-title":"Journal of the Atmospheric Sciences"},{"key":"S0014479724000164_ref29","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1093\/jexbot\/50.330.127","article-title":"Acclimation to long\u2013 term water deficit in the leaves of two sunflower hybrids: photosynthesis, electron transport and carbon metabolism","volume":"50","author":"Pankovi\u0107","year":"1999","journal-title":"Journal of Experimental Botany"},{"key":"S0014479724000164_ref33","volume-title":"R: A Language and Environment for Statistical Computing","year":"2022"},{"key":"S0014479724000164_ref8","doi-asserted-by":"crossref","first-page":"828","DOI":"10.3390\/plants13060828","article-title":"Drought stress responses in Arabica coffee genotypes: physiological and metabolic insights","volume":"13","author":"Chekol","year":"2024","journal-title":"Plants"},{"key":"S0014479724000164_ref43","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1093\/treephys\/tpac138","article-title":"Correlating Coffea canephora 3D architecture to plant photosynthesis at a daily scale and vegetative biomass allocation","volume":"43","author":"Rakocevic","year":"2023","journal-title":"Tree Physiology"},{"key":"S0014479724000164_ref22","doi-asserted-by":"crossref","first-page":"e95571","DOI":"10.1371\/journal.pone.0095571","article-title":"Understanding the low photosynthetic rates of sun and shade coffee leaves: bridging the gap on the relative roles of hydraulic, diffusive and biochemical constraints to photosynthesis","volume":"9","author":"Martins","year":"2014","journal-title":"PLoS ONE"},{"key":"S0014479724000164_ref53","first-page":"121","article-title":"Effect of water stress on the growth and physiology of coffee plants","volume":"30","author":"Vu","year":"2018","journal-title":"Journal of Agricultural, Life and Environmental Sciences"},{"key":"S0014479724000164_ref2","unstructured":"Adam, B. , Dones, N. and Sinoquet, H. (2006) VegeSTAR: software qui calcule l\u2019interception lumineuse et la photosynth\u00e8se, version 3.2: INRA. https:\/\/piaf.clermont.hub.inrae.fr\/methodeset\u2013modeles\/vegestar"},{"key":"S0014479724000164_ref55","doi-asserted-by":"crossref","first-page":"860229","DOI":"10.3389\/fpls.2022.860229","article-title":"Variation of photosynthetic induction in major horticultural crops is mostly driven by differences in stomatal traits","volume":"13","author":"Zhang","year":"2022","journal-title":"Frontiers in Plant Science"},{"key":"S0014479724000164_ref5","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1590\/S0006-87052001000100008","article-title":"Definition and outline for the phenological phases of Arabic coffee under Brazilian tropical conditions","volume":"60","author":"Camargo","year":"2001","journal-title":"Bragantia"},{"key":"S0014479724000164_ref50","doi-asserted-by":"crossref","first-page":"549","DOI":"10.3389\/fpls.2017.00549","article-title":"Photosynthesis, light use efficiency, and yield of reduced\u2013 chlorophyll soybean mutants in field conditions","volume":"8","author":"Slattery","year":"2017","journal-title":"Frontiers in Plant Science"},{"key":"S0014479724000164_ref34","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1111\/j.1744-7348.2011.00484.x","article-title":"Structural and physiological sexual dimorphism estimated from three-dimensional virtual trees of yerba-mate (Ilex paraguariensis) is modified by cultivation environment","volume":"159","author":"Rakocevic","year":"2011","journal-title":"Annals of Applied Biology"},{"key":"S0014479724000164_ref35","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1093\/aob\/mcy042","article-title":"Variations in leaf growth parameters within the tree structure of adult Coffea arabica in relation to seasonal growth, water availability and air carbon dioxide concentration","volume":"122","author":"Rakocevic","year":"2018","journal-title":"Annals of Botany"},{"key":"S0014479724000164_ref48","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1016\/j.scienta.2016.08.022","article-title":"Whole\u2013canopy gas exchanges in Coffea sp. is affected by supra\u2013optimal temperature and light distribution within the canopy: the insights from an improved multi\u2013chamber system","volume":"211","author":"Rodrigues","year":"2016","journal-title":"Scientia Horticulturae"},{"key":"S0014479724000164_ref51","doi-asserted-by":"crossref","first-page":"e69865","DOI":"10.1590\/1983-40632021v5169865","article-title":"Effect of fruit load of the first coffee harvests on leaf gas exchange","volume":"51","author":"Unigarro Mu\u00f1oz","year":"2021","journal-title":"Pesquisa Agropecu\u00e1ria Tropical"},{"key":"S0014479724000164_ref17","doi-asserted-by":"crossref","first-page":"781","DOI":"10.1146\/annurev-arplant-042817-040305","article-title":"Water use efficiency as a constraint and target for improving the resilience and productivity of C3 and C4 crops","volume":"70","author":"Leakey","year":"2019","journal-title":"The Annual Review of Plant Biology"},{"key":"S0014479724000164_ref6","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1017\/S0014479701001090","article-title":"The water relations and irrigation requirements of coffee","volume":"37","author":"Carr","year":"2001","journal-title":"Experimental Agriculture"},{"key":"S0014479724000164_ref23","doi-asserted-by":"crossref","first-page":"2075","DOI":"10.1186\/s40064-016-3762-4","article-title":"Strategies to reconstruct 3D Coffea arabica L. plant structure","volume":"5","author":"Matsunaga","year":"2016","journal-title":"SpringerPlus"},{"key":"S0014479724000164_ref10","doi-asserted-by":"crossref","first-page":"2754","DOI":"10.1038\/s41467-021-22314-w","article-title":"Evidence of anthropogenic impacts on global drought frequency, duration, and intensity","volume":"12","author":"Chiang","year":"2021","journal-title":"Nature Communications"},{"key":"S0014479724000164_ref13","doi-asserted-by":"crossref","first-page":"2366","DOI":"10.1111\/nph.19558","article-title":"Uncoupling of stomatal conductance and photosynthesis at high temperatures: mechanistic insights from online stable isotope techniques","volume":"241","author":"Diao","year":"2024","journal-title":"New Phytologist"},{"key":"S0014479724000164_ref26","doi-asserted-by":"crossref","first-page":"4309","DOI":"10.1093\/jxb\/erx211","article-title":"Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee","volume":"68","author":"Menezes\u2013Silva","year":"2017","journal-title":"Journal of Experimental Botany"},{"key":"S0014479724000164_ref3","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1046\/j.1439-0523.2002.00748.x","article-title":"Detection by simple sequence repeat markers of introgression from Coffea canephora in Coffea arabica cultivars","volume":"121","author":"Anthony","year":"2002","journal-title":"Plant Breeding"},{"key":"S0014479724000164_ref36","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1080\/15538362.2017.1422448","article-title":"Berry distributions on coffee trees cultivated under high densities modulate the chemical composition of respective coffee beans during one biannual cycle","volume":"18","author":"Rakocevic","year":"2018","journal-title":"International Journal of Fruit Science"},{"key":"S0014479724000164_ref56","doi-asserted-by":"crossref","first-page":"1965","DOI":"10.3389\/fpls.2018.01965","article-title":"Bridging drought experiment and modeling: representing the differential sensitivities of leaf gas exchange to drought","volume":"9","author":"Zhou","year":"2019","journal-title":"Frontiers in Plant Science"},{"key":"S0014479724000164_ref39","doi-asserted-by":"crossref","first-page":"109934","DOI":"10.1016\/j.scienta.2021.109934","article-title":"Multiscale analyses of growth and berry distributions along four branching orders and vertical profile of Coffea arabica L. cultivated under high\u2013density planting systems","volume":"281","author":"Rakocevic","year":"2021","journal-title":"Scientia Horticulturae"},{"key":"S0014479724000164_ref57","doi-asserted-by":"crossref","first-page":"e20190150","DOI":"10.1590\/1678-992x-2019-0150","article-title":"Soil morphostructural characterization and coffee root distribution under agroforestry system with Hevea Brasiliensis","volume":"78","author":"Nunes","year":"2021","journal-title":"Scientia Agricola"},{"key":"S0014479724000164_ref27","doi-asserted-by":"crossref","first-page":"1052","DOI":"10.1111\/j.1365-3040.2007.01683.x","article-title":"Photosynthesis and resource distribution through plant canopies","volume":"30","author":"Niinemets","year":"2007","journal-title":"Plant, Cell and Environment"},{"key":"S0014479724000164_ref19","doi-asserted-by":"crossref","first-page":"850","DOI":"10.1111\/pbi.12681","article-title":"Ectopic expression of specific GA2 oxidase mutants promotes yield and stress tolerance in rice","volume":"15","author":"Lo","year":"2017","journal-title":"Plant Biotechnology Journal"},{"key":"S0014479724000164_ref37","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1093\/aob\/mcy011","article-title":"Structural and functional changes in coffee trees after 4 years under free air CO2 enrichment","volume":"21","author":"Rakocevic","year":"2018","journal-title":"Annals of Botany"},{"key":"S0014479724000164_ref11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1590\/S1677-04202004000100001","article-title":"Exploring drought tolerance in coffee: a physiological approach with some insights for plant breeding","volume":"16","author":"DaMatta","year":"2004","journal-title":"Brazilian Journal of Plant Physiology"},{"key":"S0014479724000164_ref31","doi-asserted-by":"crossref","first-page":"110118","DOI":"10.1016\/j.foodres.2021.110118","article-title":"Treasured exceptions: Association of morphoanatomical leaf traits with cup quality of Coffea arabica L. cv. \u201cCatua\u00ed\u201d","volume":"141","author":"P\u00e9rez\u2013Molina","year":"2021","journal-title":"Food Research International"},{"key":"S0014479724000164_ref45","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1071\/PP99013","article-title":"Photosynthetic acclimation to high light conditions in mature leaves of Coffea arabica L.: Role of xanthophylls, quenching mechanisms and nitrogen nutrition","volume":"27","author":"Ramalho","year":"2000","journal-title":"Functional Plant Biology (ex\u2013Australian Journal of Plant Physiology)"},{"key":"S0014479724000164_ref52","doi-asserted-by":"crossref","first-page":"2101","DOI":"10.1093\/jxb\/erp345","article-title":"Functional\u2013structural plant modelling: a new versatile tool in crop science","volume":"61","author":"Vos","year":"2010","journal-title":"Journal of Experimental Botany"},{"key":"S0014479724000164_ref20","doi-asserted-by":"crossref","first-page":"111928","DOI":"10.1016\/j.plantsci.2023.111928","article-title":"The balance of survival: comparative drought response in wild and domesticated tomatoes","volume":"339","author":"Lupo","year":"2024","journal-title":"Plant Science"}],"container-title":["Experimental Agriculture"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.cambridge.org\/core\/services\/aop-cambridge-core\/content\/view\/S0014479724000164","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,18]],"date-time":"2024-09-18T09:12:54Z","timestamp":1726650774000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.cambridge.org\/core\/product\/identifier\/S0014479724000164\/type\/journal_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024]]},"references-count":52,"alternative-id":["S0014479724000164"],"URL":"https:\/\/doi.org\/10.1017\/s0014479724000164","relation":{},"ISSN":["0014-4797","1469-4441"],"issn-type":[{"value":"0014-4797","type":"print"},{"value":"1469-4441","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024]]},"assertion":[{"value":"\u00a9 The Author(s), 2024. Published by Cambridge University Press","name":"copyright","label":"Copyright","group":{"name":"copyright_and_licensing","label":"Copyright and Licensing"}}],"article-number":"e22"}}