{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T17:37:06Z","timestamp":1772127426561,"version":"3.50.1"},"reference-count":25,"publisher":"American Chemical Society (ACS)","issue":"9","license":[{"start":{"date-parts":[[2021,8,26]],"date-time":"2021-08-26T00:00:00Z","timestamp":1629936000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2021,8,26]],"date-time":"2021-08-26T00:00:00Z","timestamp":1629936000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2021,8,26]],"date-time":"2021-08-26T00:00:00Z","timestamp":1629936000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"funder":[{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","award":["RGPIN-2019-24734"],"award-info":[{"award-number":["RGPIN-2019-24734"]}],"id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R01GM106137"],"award-info":[{"award-number":["R01GM106137"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2021,9,27]]},"DOI":"10.1021\/acs.jcim.1c00696","type":"journal-article","created":{"date-parts":[[2021,8,26]],"date-time":"2021-08-26T11:43:36Z","timestamp":1629978216000},"page":"4139-4144","source":"Crossref","is-referenced-by-count":17,"title":["E2EDNA: Simulation Protocol for DNA Aptamers with Ligands"],"prefix":"10.1021","volume":"61","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6557-3297","authenticated-orcid":true,"given":"Michael","family":"Kilgour","sequence":"first","affiliation":[{"name":"Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada"}]},{"given":"Tao","family":"Liu","sequence":"additional","affiliation":[{"name":"Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada"}]},{"given":"Brandon D.","family":"Walker","sequence":"additional","affiliation":[{"name":"Department of Biomedical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5613-1910","authenticated-orcid":true,"given":"Pengyu","family":"Ren","sequence":"additional","affiliation":[{"name":"Department of Biomedical Engineering, The University of Texas at Austin, Austin, Texas 78712, United States"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8188-0550","authenticated-orcid":true,"given":"Lena","family":"Simine","sequence":"additional","affiliation":[{"name":"Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada"}]}],"member":"316","published-online":{"date-parts":[[2021,8,26]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.3390\/bios8020054"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1007\/s12038-020-0017-x"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1002\/ange.202008284"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1002\/anie.202103440"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.7b00063"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1021\/ac049858n"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx517"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1021\/bi00002a033"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.3390\/s131216292"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1016\/j.aca.2018.10.058"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.anchem.1.031207.112851"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2013.09.014"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21228420"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-01348-5"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1913242117"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq282"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh291"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz897"},{"key":"ref19\/cit19","unstructured":"Fernanzes-Arias, A. M.\n                      Aptafolding: Gan That Folds Aptamers\n                      ; Universidad Politecnica de Madrid: 2020."},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1186\/1748-7188-6-26"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1016\/bs.mie.2014.10.051"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1038\/s41570-017-0076"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr093"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.21596"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.7b01169"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.1c00696","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,17]],"date-time":"2023-04-17T17:03:25Z","timestamp":1681751005000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.1c00696"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,26]]},"references-count":25,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2021,9,27]]}},"alternative-id":["10.1021\/acs.jcim.1c00696"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.1c00696","relation":{"has-preprint":[{"id-type":"doi","id":"10.26434\/chemrxiv-2021-v9rzc","asserted-by":"object"}]},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,8,26]]}}}