{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,19]],"date-time":"2026-01-19T11:07:06Z","timestamp":1768820826533,"version":"3.49.0"},"reference-count":80,"publisher":"American Chemical Society (ACS)","issue":"2","license":[{"start":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T00:00:00Z","timestamp":1641772800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T00:00:00Z","timestamp":1641772800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T00:00:00Z","timestamp":1641772800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"funder":[{"DOI":"10.13039\/501100004608","name":"Natural Science Foundation of Jiangsu Province","doi-asserted-by":"publisher","award":["BK20211102"],"award-info":[{"award-number":["BK20211102"]}],"id":[{"id":"10.13039\/501100004608","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61303108"],"award-info":[{"award-number":["61303108"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012246","name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012246","id-type":"DOI","asserted-by":"publisher"}]},{"name":"MOE Key Laboratory of Systems Biomedicine, Shanghai Jiao Tong University","award":["KLSB2019KF-02"],"award-info":[{"award-number":["KLSB2019KF-02"]}]},{"name":"Natural Science Foundation of Jiangsu Higher Education Institutions","award":["17KJA520004"],"award-info":[{"award-number":["17KJA520004"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2022,1,24]]},"DOI":"10.1021\/acs.jcim.1c00982","type":"journal-article","created":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T15:36:05Z","timestamp":1641828965000},"page":"258-273","source":"Crossref","is-referenced-by-count":9,"title":["Protein Interaction Network Reconstruction with a Structural Gated Attention Deep Model by Incorporating Network Structure Information"],"prefix":"10.1021","volume":"62","author":[{"given":"Fei","family":"Zhu","sequence":"first","affiliation":[{"name":"School of Computer Science and Technology, Soochow University, Suzhou 215 006, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Feifei","family":"Li","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Soochow University, Suzhou 215 006, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lei","family":"Deng","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Soochow University, Suzhou 215 006, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fanwang","family":"Meng","sequence":"additional","affiliation":[{"name":"Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario L8S 4L8, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0763-5407","authenticated-orcid":true,"given":"Zhongjie","family":"Liang","sequence":"additional","affiliation":[{"name":"Center for Systems Biology, Department of Bioinformatics, School of Biology and Basic Medical Sciences, Soochow University, Suzhou 215 006, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2022,1,10]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1038\/nature22366"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms15586"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3178"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1038\/s41392-020-00315-3"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-018-0658-1"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.4155\/fmc.09.12"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1080\/17460441.2017.1346608"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1016\/j.ejmech.2015.01.014"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1038\/s41573-020-0086-4"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0708078105"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1002\/med.21774"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1038\/nature16963"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1016\/j.sbi.2017.02.005"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.3762\/bjoc.14.267"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.370"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1016\/j.tips.2013.04.007"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1037"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.2174\/1568026615666150112103510"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2286-9"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.5b00683"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.3390\/ijms160510855"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.7b00028"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty573"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemolab.2019.06.003"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1016\/j.neucom.2018.02.097"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1021\/pr100618t"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2018.11.011"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.3390\/molecules23081923"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1038\/nature01254"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1126\/scisignal.2001965"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2006.11.003"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa012"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz718"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0238915"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1126\/science.290.5500.2319"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1162\/089976603321780317"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1145\/2736277.2741093"},{"key":"ref38\/cit38","doi-asserted-by":"crossref","DOI":"10.1561\/9781601982957","volume-title":"Learning Deep Architectures for AI","author":"Bengio Y.","year":"2009"},{"issue":"1","key":"ref39\/cit39","first-page":"8916","volume":"28","author":"Tian F.","year":"2014","journal-title":"Proceedings of the AAAI Conference on Artificial Intelligence"},{"issue":"1","key":"ref40\/cit40","doi-asserted-by":"crossref","first-page":"10913","DOI":"10.1609\/aaai.v31i1.10913","volume":"31","author":"Mhaskar H.","year":"2017","journal-title":"Proceedings of the AAAI Conference on Artificial Intelligence"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1016\/j.gpb.2017.07.003"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1002\/prot.10082"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts475"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20184458"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2016.07.007"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1145\/3285029"},{"key":"ref47\/cit47","unstructured":"Devlin, J.; Chang, M.W.; Lee, K.; Toutanova, K. Bert: Pre-training of deep bidirectional transformers for language understanding. ArXiv preprint, arXiv:1810.04805, 2018. https:\/\/arxiv.org\/abs\/1810.04805."},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1109\/MSP.2012.2205597"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1145\/2939672.2939753"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/K16-1024"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-99501-4_21"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1049"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl958"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/30.1.303"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.3389\/fbioe.2020.00390"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn159"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0607879104"},{"key":"ref58\/cit58","doi-asserted-by":"crossref","unstructured":"Zhou, Y. Z.; Gao, Y.; Zheng, Y. Y. Advances in Computer Science and Education Applications; Springer, 2011; pp 254\u2013262.","DOI":"10.1007\/978-3-642-22456-0_37"},{"key":"ref59\/cit59","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.289"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1115"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.15406\/iratj.2018.04.00113"},{"key":"ref62\/cit62","unstructured":"Vaswani, A.; Shazeer, N.; Parmar, N.; Uszkoreit, J.; Jones, L.; Gomez, A. N.; Kaiser, L.; Polosukhin, I. Attention is all you need. arXiv preprint, arXiv:1706.03762, 2017. https:\/\/arxiv.org\/abs\/1706.03762."},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.2174\/092986610791760306"},{"issue":"2","key":"ref64\/cit64","first-page":"1253","volume":"8","author":"Xu H.","year":"2016","journal-title":"Am. J. Transl. Res."},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1131"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.2174\/157489209788452830"},{"key":"ref67\/cit67","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2984"},{"key":"ref68\/cit68","doi-asserted-by":"publisher","DOI":"10.1158\/1541-7786.MCR-08-0251"},{"key":"ref69\/cit69","doi-asserted-by":"publisher","DOI":"10.2337\/db07-1241"},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1007\/s00018-010-0460-1"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1016\/j.expneurol.2011.06.018"},{"key":"ref72\/cit72","first-page":"5324","volume":"11","author":"Deng Z.","year":"2019","journal-title":"Am. J. Transl. Res."},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-04004-2"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1186\/1478-811X-12-38"},{"issue":"6","key":"ref75\/cit75","first-page":"1206","volume":"21","author":"Liu J.","year":"2017","journal-title":"Eur. Rev. Med. Pharmacol. Sci."},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2015.08.035"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.1186\/s12964-019-0454-z"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.04.010"},{"key":"ref79\/cit79","doi-asserted-by":"publisher","DOI":"10.1021\/acs.accounts.8b00036"},{"key":"ref80\/cit80","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-biodatasci-011720-104428"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.1c00982","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,27]],"date-time":"2023-04-27T00:19:43Z","timestamp":1682554783000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.1c00982"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,1,10]]},"references-count":80,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2022,1,24]]}},"alternative-id":["10.1021\/acs.jcim.1c00982"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.1c00982","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,1,10]]}}}