{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,24]],"date-time":"2026-01-24T05:21:45Z","timestamp":1769232105349,"version":"3.49.0"},"reference-count":53,"publisher":"American Chemical Society (ACS)","issue":"2","license":[{"start":{"date-parts":[[2025,1,8]],"date-time":"2025-01-08T00:00:00Z","timestamp":1736294400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001824","name":"Grantov? Agentura Cesk? Republiky","doi-asserted-by":"publisher","award":["GA20-20152S"],"award-info":[{"award-number":["GA20-20152S"]}],"id":[{"id":"10.13039\/501100001824","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100031478","name":"NextGenerationEU","doi-asserted-by":"publisher","award":["LX22NPO5103"],"award-info":[{"award-number":["LX22NPO5103"]}],"id":[{"id":"10.13039\/100031478","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010663","name":"H2020 European Research Council","doi-asserted-by":"publisher","award":["101001470"],"award-info":[{"award-number":["101001470"]}],"id":[{"id":"10.13039\/100010663","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2025,1,27]]},"DOI":"10.1021\/acs.jcim.4c01664","type":"journal-article","created":{"date-parts":[[2025,1,9]],"date-time":"2025-01-09T02:25:16Z","timestamp":1736389516000},"page":"845-856","source":"Crossref","is-referenced-by-count":2,"title":["Split Membrane: A New Model to Accelerate All-Atom MD Simulation of Phospholipid Bilayers"],"prefix":"10.1021","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0563-0947","authenticated-orcid":true,"given":"Mehrnoosh Khodam","family":"Hazrati","sequence":"first","affiliation":[{"name":"CEITEC\u2500Central European Institute of Technology, Masaryk University, Kamenice 753\/5, 625 00 Brno, Czech Republic"}]},{"given":"Luk\u00e1\u0161","family":"Suken\u00edk","sequence":"additional","affiliation":[{"name":"CEITEC\u2500Central European Institute of Technology, Masaryk University, Kamenice 753\/5, 625 00 Brno, Czech Republic"},{"name":"Department of Condensed Matter Physics, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 267\/2, 611 37 Brno, Czech Republic"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7610-658X","authenticated-orcid":true,"given":"Robert","family":"V\u00e1cha","sequence":"additional","affiliation":[{"name":"CEITEC\u2500Central European Institute of Technology, Masaryk University, Kamenice 753\/5, 625 00 Brno, Czech Republic"},{"name":"Department of Condensed Matter Physics, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 267\/2, 611 37 Brno, Czech Republic"},{"name":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic"}]}],"member":"316","published-online":{"date-parts":[[2025,1,8]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.1c01514"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2017.10.017"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1038\/newbio236011a0"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1042\/bj2940001"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1152\/physrev.00028.2012"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1016\/j.plipres.2006.01.005"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.8b00460"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1021\/ja507832e"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.2139\/ssrn.3365009"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.3389\/fcell.2016.00106\/full"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbamem.2008.08.016"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1002\/iub.223"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1021\/jp212503e"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1039\/c3cs60093a"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1063\/1.5027078"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1063\/5.0014176"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2011.11.054"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.6b11378"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1021\/ja4003525"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1021\/jp4089113"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2015.10.008"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1016\/j.softx.2015.06.001"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","unstructured":"Lindahl, E.; Abraham, M. J.; Hess, B.; van der Spoel, D. GROMACS Source code2021. 2021 10.5281\/zenodo.4457626.","DOI":"10.5281\/zenodo.4457626"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","unstructured":"P\u00e1ll, S.; Abraham, M. J.; Kutzner, C.; Hess, B.; Lindahl, E.Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS. In  Solving Software Challenges for Exascale: International Conference on Exascale Applications and Software, EASC 2014, Stockholm, Sweden, April 2-3, 2014, Revised Selected Papers 2; Springer International Publishing, 2015; pp 3\u201327 10.1007\/978-3-319-15976-8_1.","DOI":"10.1007\/978-3-319-15976-8_1"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1063\/1.2408420"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.45.1196"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1063\/1.464397"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540130805"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1038\/s41589-020-0529-6"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20945"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.21287"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2015.11.3431"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.23702"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1021\/jp101759q"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1021\/ct300342n"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1021\/jz4007993"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.3390\/membranes5040702"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbamem.2022.183983"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2010.07.010"},{"key":"ref41\/cit41","unstructured":"Schr\u00f6dinger, L.; DeLano, W. Pymol 2020 http:\/\/www.pymol.org\/pymol."},{"key":"ref42\/cit42","unstructured":"Case, D. AMBER 2018; University of California: San Francisco, 2018."},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1002\/prot.22711"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1038\/nature08144"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2021.11.005"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1126\/science.1164772"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1021\/jp405418y"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1021\/acs.biochem.6b01085"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.12.030"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1529\/biophysj.103.034322"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1007\/s00894-019-3964-0"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5b00967"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1039\/C7CP08185E"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.4c01664","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.4c01664","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,27]],"date-time":"2025-01-27T09:14:56Z","timestamp":1737969296000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.4c01664"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1,8]]},"references-count":53,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2025,1,27]]}},"alternative-id":["10.1021\/acs.jcim.4c01664"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.4c01664","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,1,8]]}}}