{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T16:03:38Z","timestamp":1783008218798,"version":"3.54.5"},"reference-count":67,"publisher":"American Chemical Society (ACS)","issue":"2","license":[{"start":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T00:00:00Z","timestamp":1736467200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T00:00:00Z","timestamp":1736467200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T00:00:00Z","timestamp":1736467200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62102004"],"award-info":[{"award-number":["62102004"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62472005"],"award-info":[{"award-number":["62472005"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Undergraduate Innovation and Entrepreneurship Training Program Project of Anhui Agricultural University","award":["202410364124"],"award-info":[{"award-number":["202410364124"]}]},{"name":"Open Fund of Anhui Provincial Engineering Laboratory for Beidou Precision Agriculture Information","award":["BDSY2023001"],"award-info":[{"award-number":["BDSY2023001"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2025,1,27]]},"DOI":"10.1021\/acs.jcim.4c01913","type":"journal-article","created":{"date-parts":[[2025,1,10]],"date-time":"2025-01-10T16:42:42Z","timestamp":1736527362000},"page":"997-1008","source":"Crossref","is-referenced-by-count":25,"title":["deep-AMPpred: A Deep Learning Method for Identifying Antimicrobial Peptides and Their Functional Activities"],"prefix":"10.1021","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-5191-747X","authenticated-orcid":true,"given":"Jun","family":"Zhao","sequence":"first","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hangcheng","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leyao","family":"Kang","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0001-5745-3372","authenticated-orcid":true,"given":"Wanling","family":"Gao","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Quan","family":"Lu","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuan","family":"Rao","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhenyu","family":"Yue","sequence":"additional","affiliation":[{"name":"School of Information and Artificial Intelligence, Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, Key Laboratory of Agricultural Sensors for Ministry of Agriculture and Rural Affairs, Anhui Agricultural University, Hefei, Anhui 230036, China"},{"name":"Research Center for Biological Breeding Technology, Advance Academy, Anhui Agricultural University, Hefei, Anhui 230036, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2025,1,10]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1038\/nature10388"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1038\/nrd3591"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad336"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijbiomac.2022.07.103"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1021\/jacs.2c03858"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(20)30327-3"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv1278"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1030"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab1080"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0066557"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baaa061"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1191"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1002\/advs.202404049"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2024.05.013"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2018.00276"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbv033"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty1047"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2018.00515"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.00476"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv1051"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1038\/srep42362"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-19752-w"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-S1-S19"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0051444"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1016\/S0021-9673(98)00721-3"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2007.10.012"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1016\/j.patter.2023.100702"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1016\/j.artmed.2024.102860"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks450"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.1c00251"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac711"},{"key":"ref32\/cit32","unstructured":"Devlin, J. Bert: Pre-Training of Deep Bidirectional Transformers for Language Understanding.  ArXiv Prepr. ArXiv181004805 2018."},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab209"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad240"},{"key":"ref35\/cit35","unstructured":"Vaswani, A.; Shazeer, N.; Parmar, N.; Uszkoreit, J.; Jones, L.; Gomez, A. N.; Kaiser, \u0141.; Polosukhin, I. Attention Is All You Need."},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab200"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1093\/bioadv\/vbac021"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-022-01226-0"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.4c00507"},{"key":"ref40\/cit40","unstructured":"Lin, Z.; Akin, H.; Rao, R.; Hie, B.; Zhu, Z.; Lu, W.; Fazel-Zarandi, M.; Sercu, T.; Candido, S.; Rives, A. Language Models of Protein Sequences at the Scale of Evolution Enable Accurate Structure Prediction.  bioRxiv."},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.2174\/0109298673287899240303164403"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1016\/j.artmed.2024.102951"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiolchem.2024.108091"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbz043"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.26508\/lsa.201900512"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac933"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1038\/s41597-019-0154-y"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm895"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku989"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1049"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac1052"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkp846"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.3390\/app13158623"},{"key":"ref54\/cit54","unstructured":"Woo, S.; Park, J.; Lee, J.Y.; Kweon, I. S. CBAM: Convolutional Block Attention Module.  arXiv July 18, 2018. http:\/\/arxiv.org\/abs\/1807.06521 (accessed 2024\u201310\u201301)."},{"key":"ref55\/cit55","doi-asserted-by":"crossref","unstructured":"Sun, M.; Wang, Z. A Person Re-Identification Network Based upon Channel Attention and Self-Attention. In  2021 IEEE 6th International Conference on Signal and Image Processing (ICSIP); IEEE: Nanjing, China, 2021; pp 61\u201365. https:\/\/doi.org\/10.1109\/ICSIP52628.2021.9688968.","DOI":"10.1109\/ICSIP52628.2021.9688968"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1007\/s12539-022-00503-5"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.3c01017"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","unstructured":"Liang, X.; Zhao, H.; Wang, J. KT-AMP: Enhancing Antimicrobial Peptide Functions Prediction Through Knowledge Transfer on Protein Language Model. In  Bioinformatics Research and Applications; Peng, W., Cai, Z., Skums, P., Eds. Lecture Notes in Computer Science; Springer Nature Singapore: Singapore, 2024; Vol. 14955, pp 59\u201370.10.1007\/978-981-97-5131-0_6.","DOI":"10.1007\/978-981-97-5131-0_6"},{"key":"ref59\/cit59","doi-asserted-by":"crossref","unstructured":"Hayes, T.; Rao, R.; Akin, H.; Sofroniew, N. J.; Oktay, D.; Lin, Z.; Verkuil, R.; Tran, V. Q.; Deaton, J.; Wiggert, M.; Badkundri, R.; Shafkat, I.; Gong, J.; Derry, A.; Molina, R. S.; Thomas, N.; Khan, Y.; Mishra, C.; Kim, C.; Bartie, L. J.; Nemeth, M.; Hsu, P. D.; Sercu, T.; Candido, S.; Rives, A. Simulating 500 Million Years of Evolution with a Language Model. July 2, 2024. https:\/\/doi.org\/10.1101\/2024.07.01.600583.","DOI":"10.1101\/2024.07.01.600583"},{"key":"ref60\/cit60","doi-asserted-by":"crossref","unstructured":"Rao, R.; Bhattacharya, N.; Thomas, N.; Duan, Y.; Chen, P.; Canny, J.; Abbeel, P.; Song, Y. Evaluating Protein Transfer Learning with TAPE. In  Advances in Neural Information Processing Systems; Curran Associates, Inc., 2019; Vol. 32.","DOI":"10.1101\/676825"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.374"},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1016\/j.bdr.2015.12.001"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2018.2858826"},{"key":"ref64\/cit64","doi-asserted-by":"crossref","unstructured":"Li, X.; Sun, X.; Meng, Y.; Liang, J.; Wu, F.; Li, J. Dice Loss for Data-Imbalanced NLP Tasks.  arXiv August 29, 2020. https:\/\/doi.org\/10.48550\/arXiv.1911.02855.","DOI":"10.18653\/v1\/2020.acl-main.45"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac711"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btad334"},{"key":"ref67\/cit67","unstructured":"Li, Q.; Jia, X.; Zhou, J.; Shen, L.; Duan, J. Rediscovering BCE Loss for Uniform Classification.  arXiv March 12, 2024. https:\/\/doi.org\/10.48550\/arXiv.2403.07289."}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.4c01913","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.4c01913","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,27]],"date-time":"2025-01-27T09:14:35Z","timestamp":1737969275000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.4c01913"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1,10]]},"references-count":67,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2025,1,27]]}},"alternative-id":["10.1021\/acs.jcim.4c01913"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.4c01913","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,1,10]]}}}