{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T14:35:50Z","timestamp":1761921350760,"version":"3.43.0"},"reference-count":47,"publisher":"American Chemical Society (ACS)","issue":"15","license":[{"start":{"date-parts":[[2025,7,22]],"date-time":"2025-07-22T00:00:00Z","timestamp":1753142400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,7,22]],"date-time":"2025-07-22T00:00:00Z","timestamp":1753142400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,7,22]],"date-time":"2025-07-22T00:00:00Z","timestamp":1753142400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62450002"],"award-info":[{"award-number":["62450002"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2025,8,11]]},"DOI":"10.1021\/acs.jcim.5c01237","type":"journal-article","created":{"date-parts":[[2025,7,22]],"date-time":"2025-07-22T11:16:39Z","timestamp":1753182999000},"page":"8079-8096","source":"Crossref","is-referenced-by-count":1,"title":["m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites"],"prefix":"10.1021","volume":"65","author":[{"given":"Xinyu","family":"Li","sequence":"first","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"given":"Zhenjie","family":"Luo","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"given":"Jingwei","family":"Lv","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"given":"Chao","family":"Yang","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"given":"Shankai","family":"Yan","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"given":"Junlin","family":"Xu","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Wuhan, China"]},{"name":"Wuhan University of Science and Technology","place":["Wuhan, China"]}]},{"given":"Yajie","family":"Meng","sequence":"additional","affiliation":[{"name":"School of Computer Science and Artificial Intelligence","place":["Wuhan, China"]},{"name":"Wuhan Textile University","place":["Wuhan, China"]}]},{"given":"Leyi","family":"Wei","sequence":"additional","affiliation":[{"name":"Centre for Artificial Intelligence driven Drug Discovery, Faculty of Applied Science","place":["Macao SAR, China"]},{"name":"Macao Polytechnic University","place":["Macao SAR, China"]},{"name":"School of Informatics","place":["Xiamen, China"]},{"name":"Xiamen University","place":["Xiamen, China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4934-1258","authenticated-orcid":true,"given":"Zilong","family":"Zhang","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6406-1142","authenticated-orcid":true,"given":"Quan","family":"Zou","sequence":"additional","affiliation":[{"name":"Institute of Fundamental and Frontier Sciences","place":["Chengdu, China"]},{"name":"University of Electronic Science and Technology of China","place":["Chengdu, China"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7055-3813","authenticated-orcid":true,"given":"Feifei","family":"Cui","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology","place":["Haikou, China"]},{"name":"Hainan University","place":["Haikou, China"]}]}],"member":"316","published-online":{"date-parts":[[2025,7,22]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijbiomac.2023.126773"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1016\/j.csbj.2021.03.015"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh564"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1007\/s10989-019-09893-5"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1080\/15476286.2020.1712544"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbrc.2018.11.104"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1128\/jb.142.2.371-379.1980"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm205"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1261\/rna.063503.117"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.3389\/fcell.2020.00430"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz658"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2021.04.013"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1277099"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1175925"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2024.3352823"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2020.09.031"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-023-01596-0"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.2204.00300"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1109\/TNNLS.2021.3084827"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1810.04805"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.3934\/mbe.2023428"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1706.03762"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-024-00836-4"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1101\/2025.03.06.641765"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2024.3383438"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1905.11946"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2024.3425644"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2025.169005"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.2174\/0115748936272040231117114252"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-024-05727-4"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1412.6980"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-023-35663-x"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1007\/s11432-024-4171-9"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2023.107202"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac023"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae297"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1012229"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl151"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1109\/MWSCAS.2017.8053243"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.2405.13956"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-24797-2_4"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2005.09.001"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.71.10.3971"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1038\/nature12730"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2018.03.008"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-24313-3"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-024-02135-0"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.5c01237","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.5c01237","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,8,11]],"date-time":"2025-08-11T08:12:45Z","timestamp":1754899965000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.5c01237"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,7,22]]},"references-count":47,"journal-issue":{"issue":"15","published-print":{"date-parts":[[2025,8,11]]}},"alternative-id":["10.1021\/acs.jcim.5c01237"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.5c01237","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"type":"print","value":"1549-9596"},{"type":"electronic","value":"1549-960X"}],"subject":[],"published":{"date-parts":[[2025,7,22]]}}}