{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,16]],"date-time":"2026-06-16T23:32:08Z","timestamp":1781652728974,"version":"3.54.5"},"reference-count":114,"publisher":"American Chemical Society (ACS)","issue":"21","license":[{"start":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T00:00:00Z","timestamp":1760745600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T00:00:00Z","timestamp":1760745600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T00:00:00Z","timestamp":1760745600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2025,11,10]]},"DOI":"10.1021\/acs.jcim.5c01968","type":"journal-article","created":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T14:05:00Z","timestamp":1760796300000},"page":"12099-12115","source":"Crossref","is-referenced-by-count":8,"title":["HCLAMCMI: Prediction of circRNA\u2013miRNA Interactions Based on Hypergraph Contrastive Learning and an Attention Mechanism"],"prefix":"10.1021","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3068-1583","authenticated-orcid":true,"given":"Lei","family":"Chen","sequence":"first","affiliation":[{"name":"College of Information Engineering","place":["Shanghai, China"]},{"name":"Shanghai Maritime University","place":["Shanghai, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Chen","sequence":"additional","affiliation":[{"name":"College of Information Engineering","place":["Shanghai, China"]},{"name":"Shanghai Maritime University","place":["Shanghai, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bo","family":"Zhou","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences","place":["Shanghai, China"]},{"name":"Shanghai University of Medicine and Health Sciences","place":["Shanghai, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2025,10,18]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1038\/280339a0"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.15252\/embj.2018100836"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.7150\/ijms.28047"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymthe.2021.01.018"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1016\/j.ebiom.2018.07.036"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1016\/j.canlet.2021.02.004"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2021.3111607"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab494"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac613"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1007\/s12539-025-00706-6"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2024.3387913"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2024.3488281"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.3934\/mbe.2023909"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(01)00431-7"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1016\/j.cub.2009.03.059"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1038\/nature11993"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2019.103358"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1016\/j.knosys.2023.110295"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2022.105322"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1155\/2016\/1579490"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baaa085"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1261\/rna.043687.113"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1080\/15476286.2019.1600395"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-29360-3"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1141"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2022.958096"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.3390\/biology11091350"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad111"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-024-05891-7"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiomed.2023.107421"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-024-05959-4"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2025.3561197"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2022.959701"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac391"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1093\/bfgp\/elad030"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.3c00852"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1016\/j.isci.2023.107478"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.4c01118"},{"key":"ref39\/cit39","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1109\/BIBM52615.2021.9669875","author":"Qian Y.","year":"2021","journal-title":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbae020"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2025.3531427"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v33i01.33013558"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baz003"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2007.1078"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac379"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2023.3299042"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty333"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-023-05365-2"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1093\/database\/bay044"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1038\/s41419-018-0503-3"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkad717"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq241"},{"key":"ref53\/cit53","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1145\/2939672.2939754","volume-title":"Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining","author":"Grover A.","year":"2016"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2022.3191972"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1049\/syb2.70023"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.3934\/mbe.2023018"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-021-04457-1"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.3c01486"},{"key":"ref59\/cit59","doi-asserted-by":"publisher","DOI":"10.1145\/2623330.2623732"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbae386"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2024.3415058"},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa243"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-024-81862-5"},{"key":"ref64\/cit64","doi-asserted-by":"publisher","DOI":"10.1186\/s12911-023-02384-0"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac164"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.1807.03748"},{"key":"ref67\/cit67","volume-title":"3rd International Conference on Learning Representations","author":"Kingma D. P.","year":"2019"},{"key":"ref68\/cit68","first-page":"1137","volume-title":"International joint Conference on artificial intelligence","author":"Kohavi R.","year":"1995"},{"key":"ref69\/cit69","doi-asserted-by":"publisher","DOI":"10.1016\/j.molimm.2024.12.004"},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1016\/j.cancergen.2024.12.004"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1002\/prca.70013"},{"key":"ref72\/cit72","first-page":"233","author":"Davis J.","year":"2006","journal-title":"23rd international conference on machine learning"},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.2174\/0115748936359702250120114240"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-87521-7"},{"key":"ref75\/cit75","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-025-06102-7"},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.2174\/0115748936387701250811024506"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-022-05053-7"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa577"},{"key":"ref79\/cit79","doi-asserted-by":"publisher","DOI":"10.48550\/arXiv.2010.16061"},{"key":"ref80\/cit80","doi-asserted-by":"publisher","DOI":"10.1186\/s40364-022-00419-8"},{"key":"ref81\/cit81","doi-asserted-by":"publisher","DOI":"10.1007\/s00432-023-04583-8"},{"key":"ref82\/cit82","doi-asserted-by":"publisher","DOI":"10.1007\/s10571-021-01107-1"},{"key":"ref83\/cit83","doi-asserted-by":"publisher","DOI":"10.1016\/j.ebiom.2019.09.051"},{"key":"ref84\/cit84","doi-asserted-by":"publisher","DOI":"10.1042\/CS20190940"},{"key":"ref85\/cit85","doi-asserted-by":"publisher","DOI":"10.1038\/s41420-021-00512-1"},{"key":"ref86\/cit86","doi-asserted-by":"publisher","DOI":"10.4149\/gpb_2022054"},{"key":"ref87\/cit87","doi-asserted-by":"publisher","DOI":"10.1155\/2021\/3823122"},{"key":"ref88\/cit88","doi-asserted-by":"publisher","DOI":"10.1016\/j.biopha.2019.109658"},{"key":"ref89\/cit89","doi-asserted-by":"publisher","DOI":"10.3390\/jpm13030550"},{"key":"ref90\/cit90","doi-asserted-by":"publisher","DOI":"10.3390\/biology10111182"},{"key":"ref91\/cit91","doi-asserted-by":"publisher","DOI":"10.53555\/jptcp.v29i02.4161"},{"key":"ref92\/cit92","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygyno.2024.05.001"},{"key":"ref93\/cit93","doi-asserted-by":"publisher","DOI":"10.1186\/1475-2867-14-47"},{"key":"ref94\/cit94","doi-asserted-by":"publisher","DOI":"10.1038\/srep35714"},{"key":"ref95\/cit95","doi-asserted-by":"publisher","DOI":"10.1055\/s-0040-1719030"},{"key":"ref96\/cit96","doi-asserted-by":"publisher","DOI":"10.1007\/s10753-021-01480-5"},{"key":"ref97\/cit97","doi-asserted-by":"publisher","DOI":"10.1097\/SHK.0b013e318241baf8"},{"key":"ref98\/cit98","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiaa399"},{"key":"ref99\/cit99","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijcard.2022.01.043"},{"key":"ref100\/cit100","doi-asserted-by":"publisher","DOI":"10.1016\/j.ncrna.2024.09.006"},{"key":"ref101\/cit101","doi-asserted-by":"publisher","DOI":"10.1007\/s11010-022-04455-8"},{"key":"ref102\/cit102","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2021.11.007"},{"key":"ref103\/cit103","doi-asserted-by":"publisher","DOI":"10.1007\/s10067-023-06560-5"},{"key":"ref104\/cit104","doi-asserted-by":"publisher","DOI":"10.1080\/15384101.2020.1839701"},{"key":"ref105\/cit105","doi-asserted-by":"publisher","DOI":"10.1007\/s00262-022-03235-z"},{"key":"ref106\/cit106","doi-asserted-by":"publisher","DOI":"10.1093\/toxsci\/kfaa173"},{"key":"ref107\/cit107","doi-asserted-by":"publisher","DOI":"10.3389\/fphys.2022.1008364"},{"key":"ref108\/cit108","unstructured":"Sabour, S.; Frosst, N.; Hinton, G. E. Dynamic routing between capsules.\n                      Adv. Neural Inf. Process.Syst.\n                      2017, 30."},{"key":"ref109\/cit109","doi-asserted-by":"publisher","DOI":"10.1186\/s12918-017-0390-8"},{"key":"ref110\/cit110","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv256"},{"key":"ref111\/cit111","doi-asserted-by":"publisher","DOI":"10.1007\/s42485-024-00171-7"},{"key":"ref112\/cit112","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2025.3530794"},{"key":"ref113\/cit113","doi-asserted-by":"publisher","DOI":"10.1109\/TSMC.2025.3572738"},{"key":"ref114\/cit114","doi-asserted-by":"publisher","DOI":"10.1038\/s41551-024-01312-5"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.5c01968","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.5c01968","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,10]],"date-time":"2025-11-10T09:12:00Z","timestamp":1762765920000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.5c01968"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10,18]]},"references-count":114,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2025,11,10]]}},"alternative-id":["10.1021\/acs.jcim.5c01968"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.5c01968","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,10,18]]}}}