{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T05:31:45Z","timestamp":1773207105199,"version":"3.50.1"},"reference-count":80,"publisher":"American Chemical Society (ACS)","issue":"5","license":[{"start":{"date-parts":[[2026,2,24]],"date-time":"2026-02-24T00:00:00Z","timestamp":1771891200000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000165","name":"Division of Chemistry","doi-asserted-by":"publisher","award":["2136142"],"award-info":[{"award-number":["2136142"]}],"id":[{"id":"10.13039\/100000165","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006462","name":"City University of New York","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100006462","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["1R15GM146228-01"],"award-info":[{"award-number":["1R15GM146228-01"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2026,3,9]]},"DOI":"10.1021\/acs.jcim.6c00317","type":"journal-article","created":{"date-parts":[[2026,2,24]],"date-time":"2026-02-24T15:41:46Z","timestamp":1771947706000},"page":"2889-2899","source":"Crossref","is-referenced-by-count":0,"title":["Mapping Allosteric Communication in the Nucleosome with Conditional Activity"],"prefix":"10.1021","volume":"66","author":[{"given":"Augustine C.","family":"Onyema","sequence":"first","affiliation":[{"name":"Department of Chemistry, College of Staten Island, The City University of New York, 2800 Victory Boulevard, Staten Island, New York 10314, United States"},{"name":"Ph.D. Program in Biochemistry","place":["New York, United States"]},{"name":"The Graduate Center of the City University of New York","place":["New York, United States"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chukwuebuka","family":"Dikeocha","sequence":"additional","affiliation":[{"name":"Department of Computer Science, College of Staten Island, The City University of New York, 2800 Victory Boulevard, Staten Island, New York 10314, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-0177-0062","authenticated-orcid":true,"given":"Rutika","family":"Patel","sequence":"additional","affiliation":[{"name":"Department of Chemistry, College of Staten Island, The City University of New York, 2800 Victory Boulevard, Staten Island, New York 10314, United States"},{"name":"Ph.D. Program in Biochemistry","place":["New York, United States"]},{"name":"The Graduate Center of the City University of New York","place":["New York, United States"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3701-1830","authenticated-orcid":true,"given":"Jonathan","family":"Moussa","sequence":"additional","affiliation":[{"name":"The Molecular Science Software Institute (MolSSI)","place":["Blacksburg, United States"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7643-6498","authenticated-orcid":true,"given":"Sharon M.","family":"Loverde","sequence":"additional","affiliation":[{"name":"Department of Chemistry, College of Staten Island, The City University of New York, 2800 Victory Boulevard, Staten Island, New York 10314, United States"},{"name":"Ph.D. Program in Chemistry, Biochemistry, and Physics","place":["New York, United States"]},{"name":"The Graduate Center of the City University of New York","place":["New York, United States"]},{"name":"Ph.D. Program in Biochemistry","place":["New York, United States"]},{"name":"The Graduate Center of the City University of New York","place":["New York, United States"]}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2026,2,24]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1225829"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2022.167518"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1126\/science.8023157"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.96.1.91"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.3c07363"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.7b00427"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(65)80285-6"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1038\/nsmb1132"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1021\/jacs.5b08814"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1016\/S0006-3495(01)76033-X"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.95.19.11163"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1098\/rsta.2015.0202"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1901692116"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaf601"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1017\/s0033583524000143"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1063\/1.4811489"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5c00196"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1009253"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1063\/1.5063851"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1016\/j.semcdb.2015.12.007"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.6b01181"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.physchem.51.1.99"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-3093(00)00225-8"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0810961106"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1021\/jacs.7b05313"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.122653799"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.7554\/elife.73601"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1038\/nature09775"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1010113"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004746"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004620"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.5b00541"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21030847"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.8b00760"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.1c00279"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2015.12.015"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.4c00059"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2009.12.2590"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2016.11.015"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky526"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.5b09734"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-36467-3"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2025.06.011"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad532"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1063\/5.0235544"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5c00445"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2023.08.010"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-330"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.3390\/proceedings2019033031"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1107\/S0567740882004075"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(00)81307-0"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(02)00386-8"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2010.08.039"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.3390\/ijms23031454"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1038\/38444"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.02.001"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1021\/jacs.4c14136"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","DOI":"10.1038\/nature24046"},{"key":"ref59\/cit59","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2008.05.006"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2015.10.070"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.1534\/genetics.117.201939"},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1042\/BST20210773"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.2c01520"},{"key":"ref64\/cit64","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1705685114"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1126\/science.aau9904"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.02.001"},{"key":"ref67\/cit67","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.8b05067"},{"key":"ref68\/cit68","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-22636-9"},{"key":"ref69\/cit69","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-019-1029-2"},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0268760"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-018-0029-y"},{"key":"ref72\/cit72","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-025-57915-2"},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms14860"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-019-1669-2"},{"key":"ref75\/cit75","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2018.12.014"},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.1002\/wcms.1529"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.3390\/ijms242015194"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1016\/j.pnmrs.2019.01.002"},{"key":"ref79\/cit79","doi-asserted-by":"publisher","DOI":"10.1038\/s41573-025-01220-6"},{"key":"ref80\/cit80","doi-asserted-by":"publisher","DOI":"10.1172\/jci183391"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.6c00317","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.6c00317","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,3,10]],"date-time":"2026-03-10T07:40:57Z","timestamp":1773128457000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.6c00317"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,2,24]]},"references-count":80,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2026,3,9]]}},"alternative-id":["10.1021\/acs.jcim.6c00317"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.6c00317","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,2,24]]}}}