{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T17:38:32Z","timestamp":1772127512412,"version":"3.50.1"},"reference-count":84,"publisher":"American Chemical Society (ACS)","issue":"5","funder":[{"DOI":"10.13039\/100000052","name":"NIH Office of the Director","doi-asserted-by":"publisher","award":["DP2 OD007237"],"award-info":[{"award-number":["DP2 OD007237"]}],"id":[{"id":"10.13039\/100000052","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R01 GM118000"],"award-info":[{"award-number":["R01 GM118000"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R01 GM110129"],"award-info":[{"award-number":["R01 GM110129"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["P41 GM103426"],"award-info":[{"award-number":["P41 GM103426"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2019,5,28]]},"DOI":"10.1021\/acs.jcim.8b00427","type":"journal-article","created":{"date-parts":[[2018,8,21]],"date-time":"2018-08-21T14:20:33Z","timestamp":1534861233000},"page":"2264-2273","source":"Crossref","is-referenced-by-count":15,"title":["Determinants of Oligonucleotide Selectivity of APOBEC3B"],"prefix":"10.1021","volume":"59","author":[{"given":"Jeffrey R.","family":"Wagner","sequence":"first","affiliation":[{"name":"Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0340, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3317-4731","authenticated-orcid":true,"given":"\u00d6zlem","family":"Demir","sequence":"additional","affiliation":[{"name":"Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0340, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael A.","family":"Carpenter","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota 55455, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hideki","family":"Aihara","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota 55455, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5950-931X","authenticated-orcid":true,"given":"Daniel A.","family":"Harki","sequence":"additional","affiliation":[{"name":"Department of Medicinal Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Reuben S.","family":"Harris","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota 55455, United States"},{"name":"Howard Hughes Medical Institute, University of Minnesota, Minneapolis, Minnesota 55455, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9275-9553","authenticated-orcid":true,"given":"Rommie E.","family":"Amaro","sequence":"additional","affiliation":[{"name":"Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0340, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2018,8,21]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.6b00296"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1093\/annonc\/mdy003"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3729"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2008.04.008"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2015.03.012"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1021\/cb200440y"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1002\/cmdc.201200411"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1016\/j.chembiol.2017.10.007"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0171343"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1007\/s12672-014-0196-8"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1424869112"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.1601737"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms7997"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1038\/leu.2015.22"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1016\/j.urolonc.2015.05.009"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1038\/leu.2017.345"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1038\/nature11881"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2701"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2702"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1038\/nature12477"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.04.024"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1126\/science.1253462"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-1042-9"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1158\/0008-5472.CAN-13-1753"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.4161\/cc.23713"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02645-10"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.02471-07"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2014.02.011"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2014.09.023"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1021\/acs.biochem.6b00382"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M115.679951"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-17694-3"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1038\/nsmb.3344"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/29.13.2860"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1112"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.3390\/ijms150712335"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1021\/bi982362d"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M109.025536"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1084\/jem.20092238"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2013.07.040"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms15024"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1306345110"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M112.385161"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1042\/BJ20150382"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks685"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0063461"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1016\/j.dnarep.2010.02.010"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.1042"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1155\/2015\/183918"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1002\/wrna.1396"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1002\/0471142700.nc0705s54"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2010.10507372"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1021\/ct5008108"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1016\/j.sbi.2013.12.006"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-12-800168-4.00007-X"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1016\/j.pbiomolbio.2013.06.004"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1016\/j.abb.2015.08.002"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","DOI":"10.1529\/biophysj.106.097782"},{"key":"ref59\/cit59","doi-asserted-by":"publisher","DOI":"10.1021\/ja0753546"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5b00255"},{"key":"ref61\/cit61","unstructured":"Case, D. A.; Cerutti, D. S.; Cheatham, T. E., III; Darden, T. A.; Duke, R. E.; Giese, T. J.; Gohlke, H.; Goetz, A. W.; Greene, D.; Homeyer, N.; Izadi, S.; Kovalenko, A.; Lee, T. S.; LeGrand, S.; Li, P.; Lin, C.; Liu, J.; Luchko, T.; Luo, R.; Mermelstein, D.; Merz, K.\nM.; Monard, G.; Nguyen, H.; Omelyan, I.; Onufriev, A.; Pan, F.; Qi, R.; Roe, D. R.; Roitberg, A.; Sagui, C.; Simmerling, C. L.; Botello-Smith, W. M.; Swails, J.; Walker, R. C.; Wang, J.; Wolf, R. M.; Wu, X.; Xiao, L.; York, D. M.; Kollman, P. A.\n                      AMBER 16 and AMBER Tools 17\n                      ; University of California, San Francisco, 2017."},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1002\/wcms.1121"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20290"},{"key":"ref64\/cit64","doi-asserted-by":"publisher","DOI":"10.1021\/ct100481h"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1002\/prot.10613"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(02)00470-9"},{"key":"ref67\/cit67","doi-asserted-by":"publisher","DOI":"10.1021\/ct200133y"},{"key":"ref68\/cit68","doi-asserted-by":"publisher","DOI":"10.1021\/ct100578z"},{"key":"ref69\/cit69","doi-asserted-by":"publisher","DOI":"10.1007\/s008940050119"},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1021\/ja00778a043"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1021\/ja00280a004"},{"key":"ref72\/cit72","doi-asserted-by":"publisher","DOI":"10.1021\/ct400341p"},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2015.08.015"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1109\/MCSE.2007.55"},{"key":"ref75\/cit75","doi-asserted-by":"publisher","DOI":"10.1016\/0079-6107(84)90007-5"},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.7b00500"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2010.10.007"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1021\/ct500381c"},{"key":"ref79\/cit79","doi-asserted-by":"publisher","DOI":"10.1016\/0263-7855(96)00018-5"},{"key":"ref80\/cit80","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2013.03.003"},{"key":"ref81\/cit81","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.03173-12"},{"key":"ref82\/cit82","doi-asserted-by":"publisher","DOI":"10.1038\/nature06638"},{"key":"ref83\/cit83","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky332"},{"key":"ref84\/cit84","author":"Gerhke J. M.","year":"2018","journal-title":"bioRxiv"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.8b00427","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,26]],"date-time":"2023-04-26T10:42:33Z","timestamp":1682505753000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.8b00427"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,8,21]]},"references-count":84,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2019,5,28]]}},"alternative-id":["10.1021\/acs.jcim.8b00427"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.8b00427","relation":{"has-preprint":[{"id-type":"doi","id":"10.26434\/chemrxiv.6217427.v1","asserted-by":"object"}]},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,8,21]]}}}