{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T23:01:34Z","timestamp":1773270094957,"version":"3.50.1"},"reference-count":57,"publisher":"American Chemical Society (ACS)","issue":"9","funder":[{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1121629"],"award-info":[{"award-number":["1121629"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000923","name":"Australian Research Council","doi-asserted-by":"publisher","award":["DP180102060"],"award-info":[{"award-number":["DP180102060"]}],"id":[{"id":"10.13039\/501100000923","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2018,9,24]]},"DOI":"10.1021\/acs.jcim.8b00442","type":"journal-article","created":{"date-parts":[[2018,8,17]],"date-time":"2018-08-17T23:53:12Z","timestamp":1534549992000},"page":"2033-2042","source":"Crossref","is-referenced-by-count":14,"title":["Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning"],"prefix":"10.1021","volume":"58","author":[{"given":"Jaswinder","family":"Singh","sequence":"first","affiliation":[{"name":"Signal Processing Laboratory, Griffith University, Brisbane, QLD 4122, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6956-6748","authenticated-orcid":true,"given":"Jack","family":"Hanson","sequence":"additional","affiliation":[{"name":"Signal Processing Laboratory, Griffith University, Brisbane, QLD 4122, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rhys","family":"Heffernan","sequence":"additional","affiliation":[{"name":"Signal Processing Laboratory, Griffith University, Brisbane, QLD 4122, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kuldip","family":"Paliwal","sequence":"additional","affiliation":[{"name":"Signal Processing Laboratory, Griffith University, Brisbane, QLD 4122, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yuedong","family":"Yang","sequence":"additional","affiliation":[{"name":"Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, QLD 4222, Australia"},{"name":"School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, Guangdong 510006, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9958-5699","authenticated-orcid":true,"given":"Yaoqi","family":"Zhou","sequence":"additional","affiliation":[{"name":"Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, QLD 4222, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2018,8,17]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1998.2459"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1007\/s00726-013-1511-3"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1016\/S0014-5793(98)00098-2"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2011.06.022"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.151103798"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1002\/prot.20342"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.494"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1038\/nature04130"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1002\/pro.5560050917"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2006.07.026"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbw129"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1016\/0014-5793(90)80833-5"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1999.3217"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1046\/j.1399-3011.2004.00100.x"},{"key":"ref15\/cit15","volume-title":"Statistical Learning Theory","author":"Vapnik V. N.","year":"1998"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-7-124"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-113"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2369040"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2013.132"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti089"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2008.05.006"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw678"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty481"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005324"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1145\/2975167.2975212"},{"key":"ref26\/cit26","unstructured":"Park, S.; Min, S.; Choi, H.; Yoon, S. deepMiRGene: Deep Neural Network based Precursor microRNA Prediction. 2016, arXiv:1605.00017 [cs.LG]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1605.00017."},{"key":"ref27\/cit27","unstructured":"S\u00f8nderby, S. K.; Winther, O. Protein Secondary Structure Prediction with Long Short Term Memory Networks. 2014, arXiv:1412.7828 [q-bio.QM]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1412.7828."},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1038\/srep18962"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1038\/srep11476"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv665"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx218"},{"key":"ref32\/cit32","author":"Heffernan R.","year":"2018","journal-title":"J. Comput. Chem."},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1109\/78.650093"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1162\/neco.1997.9.8.1735"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1038\/323533a0"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1162\/neco.1989.1.4.541"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2016.90"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-46493-0_38"},{"key":"ref39\/cit39","doi-asserted-by":"crossref","unstructured":"Kim, J.; El-Khamy, M.; Lee, J. Residual LSTM: Design of a Deep Recurrent Architecture for Distant Speech Recognition. 2017, arXiv:1701.03360 [cs.LG]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1701.03360.","DOI":"10.21437\/Interspeech.2017-477"},{"key":"ref40\/cit40","unstructured":"Clevert, D.A.; Unterthiner, T.; Hochreiter, S. Fast and Accurate Deep Network Learning by Exponential Linear Units (ELUs). 2015, arXiv:1511.07289 [cs.LG]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1511.07289."},{"key":"ref41\/cit41","first-page":"1929","volume":"15","author":"Srivastava N.","year":"2014","journal-title":"J. Mach. Learn. Res."},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1109\/34.58871"},{"key":"ref43\/cit43","unstructured":"Abadi, M.; Agarwal, A.; Barham, P.; Brevdo, E.; Chen, Z.; Citro, C.; Corrado, G. S.; Davis, A.; Dean, J.; Devin, M.; Ghemawat, S.; Goodfellow, I.; Harp, A.; Irving, G.; Isard, M.; Jia, Y.; J\u00f3zefowicz, R.; Kaiser, L.; Kudlur, M.; Levenberg, J.; Man\u00e9, D.; Monga, R.; Moore, S.; Murray, D.; Olah, C.; Schuster, M.; Shlens, J.; Steiner, B.; Sutskever, I.; Talwar, K.; Tucker, P.; Vanhoucke, V.; Vasudevan, V.; Vi\u00e9gas, F. B.; Vinyals, O.; Warden, P.; Wattenberg, M.; Wicke, M.; Yu, Y.; Zheng, X. TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems. 2016, arXiv:1603.04467 [cs.DC]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1603.04467."},{"key":"ref44\/cit44","unstructured":"Kingma, D. P.; Ba, J. Adam: A Method for Stochastic Optimization. 2014, arXiv:1412.6980 [cs.LG]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1412.6980."},{"key":"ref45\/cit45","unstructured":"Ba, J. L.; Kiros, J. R.; Hinton, G. E. Layer Normalization. 2016, arXiv:1607.06450 [stat.ML]. arXiv.org e-Print archive. https:\/\/arxiv.org\/abs\/1607.06450."},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1016\/j.patcog.2004.01.013"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr981"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1818"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1016\/0005-2795(75)90109-9"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1145\/1143844.1143874"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkm998"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(88)90564-5"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1101\/gr.849004"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1148\/radiology.143.1.7063747"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1613\/jair.953"},{"key":"ref57\/cit57","doi-asserted-by":"crossref","first-page":"429","DOI":"10.3233\/IDA-2002-6504","volume":"6","author":"Japkowicz N.","year":"2002","journal-title":"Intell. Data Anal."}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.8b00442","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,16]],"date-time":"2023-04-16T16:10:10Z","timestamp":1681661410000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.8b00442"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,8,17]]},"references-count":57,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2018,9,24]]}},"alternative-id":["10.1021\/acs.jcim.8b00442"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.8b00442","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,8,17]]}}}