{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,28]],"date-time":"2026-04-28T14:34:04Z","timestamp":1777386844107,"version":"3.51.4"},"reference-count":78,"publisher":"American Chemical Society (ACS)","issue":"3","license":[{"start":{"date-parts":[[2020,9,1]],"date-time":"2020-09-01T00:00:00Z","timestamp":1598918400000},"content-version":"vor","delay-in-days":215,"URL":"http:\/\/pubs.acs.org\/page\/policy\/authorchoice_ccby_termsofuse.html"}],"funder":[{"DOI":"10.13039\/501100003725","name":"National Research Foundation of Korea","doi-asserted-by":"publisher","award":["2008-0061987"],"award-info":[{"award-number":["2008-0061987"]}],"id":[{"id":"10.13039\/501100003725","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["UMO-2017\/25\/B\/ST4\/01026"],"award-info":[{"award-number":["UMO-2017\/25\/B\/ST4\/01026"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["UMO-2017\/26\/M\/ST4\/00044"],"award-info":[{"award-number":["UMO-2017\/26\/M\/ST4\/00044"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["UMO-2017\/27\/B\/ST4\/00926"],"award-info":[{"award-number":["UMO-2017\/27\/B\/ST4\/00926"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["UMO-2018\/30\/E\/ST4\/00037"],"award-info":[{"award-number":["UMO-2018\/30\/E\/ST4\/00037"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2020,3,23]]},"DOI":"10.1021\/acs.jcim.9b00864","type":"journal-article","created":{"date-parts":[[2020,1,30]],"date-time":"2020-01-30T22:17:53Z","timestamp":1580422673000},"page":"1844-1864","source":"Crossref","is-referenced-by-count":15,"title":["Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13"],"prefix":"10.1021","volume":"60","author":[{"given":"Agnieszka S.","family":"Karczy\u0144ska","sequence":"first","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karolina","family":"Zi\u0229ba","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Urszula","family":"Uciechowska","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Magdalena A.","family":"Mozolewska","sequence":"additional","affiliation":[{"name":"Institute of Computer Science, Polish Academy of Sciences, ul. Jana Kazimierza 5, Warsaw PL-02668, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9710-7837","authenticated-orcid":true,"given":"Pawe\u0142","family":"Krupa","sequence":"additional","affiliation":[{"name":"Institute of Physics, Polish Academy of Sciences, Aleja Lotnik\u00f3w 32\/46, Warsaw PL-02668, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emilia A.","family":"Lubecka","sequence":"additional","affiliation":[{"name":"Institute of Informatics, Faculty of Mathematics, Physics, and Informatics, University of Gda\u0144sk, Wita Stwosza 57, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Agnieszka G.","family":"Lipska","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8288-166X","authenticated-orcid":true,"given":"Celina","family":"Sikorska","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5166-4849","authenticated-orcid":true,"given":"Sergey A.","family":"Samsonov","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2426-3644","authenticated-orcid":true,"given":"Adam K.","family":"Sieradzan","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"},{"name":"School of Computational Sciences, Korea Institute for Advanced Study, 85 Hoegiro, Dongdaemun-gu, Seoul 130-722, Republic of Korea"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Artur","family":"Gie\u0142do\u0144","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6942-2226","authenticated-orcid":true,"given":"Adam","family":"Liwo","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"},{"name":"School of Computational Sciences, Korea Institute for Advanced Study, 85 Hoegiro, Dongdaemun-gu, Seoul 130-722, Republic of Korea"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rafa\u0142","family":"\u015alusarz","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Magdalena","family":"\u015alusarz","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4432-6163","authenticated-orcid":true,"given":"Jooyoung","family":"Lee","sequence":"additional","affiliation":[{"name":"School of Computational Sciences, Korea Institute for Advanced Study, 85 Hoegiro, Dongdaemun-gu, Seoul 130-722, Republic of Korea"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Keehyoung","family":"Joo","sequence":"additional","affiliation":[{"name":"Center for Advanced Computation, Korea Institute for Advanced Study, 85 Hoegiro, Dongdaemun-gu, Seoul 130-722, Republic of Korea"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0294-3403","authenticated-orcid":true,"given":"Cezary","family":"Czaplewski","sequence":"additional","affiliation":[{"name":"Faculty of Chemistry, University of Gda\u0144sk, Wita Stwosza 63, Gda\u0144sk 80-308, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2020,1,30]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"crossref","unstructured":"Tramontano, A. The Ten Most Wanted Solutions in Protein Bioinformatics; Taylor & Francis: Boca Raton, 2005; pp 69\u201388.","DOI":"10.1201\/9781420035001"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1107\/S0021889800014126"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2013.04.020"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25452"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1021\/ac991081o"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1320298111"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1002\/prot.24452"},{"key":"ref8\/cit8","unstructured":"Scheraga, H. A. In  Current Topics in Biochemistry; Anfinsen, C. B., Schechter, A. N., Eds. Academic Press: New York, 1974; pp 1\u201342."},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.6b00163"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw404"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1314045110"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25425"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25423"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25800"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25787"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25824"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25792"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25064"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1016\/S0076-6879(04)83004-0"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1126\/science.aah4043"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.5b00117"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.6b00189"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1007\/s00894-014-2306-5"},{"key":"ref24\/cit24","unstructured":"Fiser, A. \u0160ali, A. In  Methods in Enzymology; Carter, C., Sweet, R., Eds. Academic Press: San Diego, 2003; Vol. 374; pp 463\u2013493."},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-016-1405-y"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2018.05.008"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25421"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1016\/j.cplett.2004.11.134"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbrc.2008.02.048"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.7b00254"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25816"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25838"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg571"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25408"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25795"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1016\/0378-4371(94)90342-5"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1016\/S0006-3495(03)74897-8"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1021\/ct800397z"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540130812"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1021\/jp065380a"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20906"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.1038\/nprot.2008.184"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5b00255"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1038\/nprot.2016.169"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25219"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1063\/1.4978680"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1002\/prot.24917"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1002\/prot.24930"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1002\/prot.23175"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005324"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty278"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1021\/jp058008o"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1021\/jp058007w"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1063\/1.2399526"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1063\/1.2186639"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2017.12.007"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1021\/ct9004068"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","DOI":"10.14529\/jsfi180206"},{"key":"ref59\/cit59","doi-asserted-by":"crossref","DOI":"10.1007\/978-94-009-3789-5","volume-title":"Multivariate Data Analysis","author":"Murtagh F.","year":"1987"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gki408"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25403"},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25775"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1002\/prot.24470"},{"key":"ref64\/cit64","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz422"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1002\/prot.23183"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti630"},{"key":"ref67\/cit67","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-26812-8"},{"key":"ref68\/cit68","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty1037"},{"key":"ref69\/cit69","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv581"},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv357"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1021\/jp212541y"},{"key":"ref72\/cit72","volume-title":"Analysis of Biological Data: A Soft Computing Approach","author":"Ba\u00fa D.","year":"2007"},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-198"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv458"},{"key":"ref75\/cit75","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbx165"},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz740"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.1063\/1.5093015"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2019.07.013"}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.9b00864","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jcim.9b00864","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,26]],"date-time":"2023-04-26T04:57:15Z","timestamp":1682485035000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.9b00864"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,1,30]]},"references-count":78,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2020,3,23]]}},"alternative-id":["10.1021\/acs.jcim.9b00864"],"URL":"https:\/\/doi.org\/10.1021\/acs.jcim.9b00864","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,1,30]]}}}