{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T00:42:38Z","timestamp":1771634558986,"version":"3.50.1"},"reference-count":46,"publisher":"American Chemical Society (ACS)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2012,8,27]]},"DOI":"10.1021\/ci3001474","type":"journal-article","created":{"date-parts":[[2012,7,12]],"date-time":"2012-07-12T15:39:43Z","timestamp":1342107583000},"page":"2204-2214","source":"Crossref","is-referenced-by-count":6,"title":["Engineering Protein Therapeutics: Predictive Performances of a Structure-Based Virtual Affinity Maturation Protocol"],"prefix":"10.1021","volume":"52","author":[{"given":"Michael","family":"Oberlin","sequence":"first","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]},{"given":"Romano","family":"Kroemer","sequence":"additional","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]},{"given":"Vincent","family":"Mikol","sequence":"additional","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]},{"given":"Herv\u00e9","family":"Minoux","sequence":"additional","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]},{"given":"Erdogan","family":"Tastan","sequence":"additional","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]},{"given":"Nicolas","family":"Baurin","sequence":"additional","affiliation":[{"name":"SANOFI R&D, Centre de Recherche de Vitry\/Alfortville, LGCR\/SDI, 13 quai Jules Guesde - BP 14 - 94403 Vitry-sur-Seine Cedex, France"}]}],"member":"316","published-online":{"date-parts":[[2012,7,24]]},"reference":[{"issue":"3","key":"ref1\/cit1","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1111\/j.1476-5381.2011.01811.x","volume":"166","author":"Bugelski P. J.","year":"2012","journal-title":"Br. J. Pharmacol."},{"issue":"3","key":"ref2\/cit2","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1111\/j.1476-5381.2011.01812.x","volume":"166","author":"Martin P. L.","year":"2012","journal-title":"Br. J. Pharmacol."},{"issue":"3","key":"ref3\/cit3","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1038\/clpt.2011.332","volume":"91","author":"Honig P. K.","year":"2012","journal-title":"Clin. Pharmacol. Ther."},{"issue":"6","key":"ref4\/cit4","doi-asserted-by":"crossref","first-page":"423","DOI":"10.2174\/138920108786786358","volume":"9","author":"Reichert J. M.","year":"2008","journal-title":"Curr. Pharm. Biotechnol."},{"issue":"1","key":"ref5\/cit5","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1039\/B511782H","volume":"2","author":"Levin A. M.","year":"2006","journal-title":"Mol. Biosyst."},{"issue":"3","key":"ref6\/cit6","doi-asserted-by":"crossref","first-page":"604","DOI":"10.1038\/sj.leu.2402831","volume":"17","author":"Zhu Z.","year":"2003","journal-title":"Leukemia"},{"issue":"2","key":"ref7\/cit7","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1084\/jem.132.2.211","volume":"132","author":"Wu T. T.","year":"1970","journal-title":"J. Exp. Med."},{"issue":"2","key":"ref8\/cit8","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1016\/0022-2836(92)91010-M","volume":"224","author":"Foote J.","year":"1992","journal-title":"J. Mol. Biol."},{"issue":"1","key":"ref9\/cit9","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1002\/prot.10388","volume":"52","author":"Chen R.","year":"2003","journal-title":"Proteins"},{"issue":"10","key":"ref10\/cit10","doi-asserted-by":"crossref","first-page":"1744","DOI":"10.1107\/S0907444902012805","volume":"58","author":"Stura E. A.","year":"2002","journal-title":"Acta Crystallogr., Sect. D: Biol. Crystallogr."},{"issue":"3","key":"ref11\/cit11","doi-asserted-by":"crossref","first-page":"789","DOI":"10.1006\/jmbi.2000.3758","volume":"299","author":"Voigt C. A.","year":"2000","journal-title":"J. Mol. Biol."},{"issue":"6369","key":"ref12\/cit12","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/356539a0","volume":"356","author":"Desmet J.","year":"1992","journal-title":"Nature"},{"issue":"5","key":"ref13\/cit13","doi-asserted-by":"crossref","first-page":"1335","DOI":"10.1016\/S0006-3495(94)80923-3","volume":"66","author":"Goldstein R. F.","year":"1994","journal-title":"Biophys. J."},{"issue":"2","key":"ref14\/cit14","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1002\/(SICI)1097-0134(19981101)33:2<227::AID-PROT7>3.0.CO;2-F","volume":"33","author":"Leach A. R.","year":"1998","journal-title":"Proteins"},{"issue":"12","key":"ref15\/cit15","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1021\/ar000033j","volume":"33","author":"Kollman P. A.","year":"2000","journal-title":"Acc. Chem. Res."},{"issue":"10","key":"ref16\/cit16","doi-asserted-by":"crossref","first-page":"1171","DOI":"10.1038\/nbt1336","volume":"25","author":"Lippow S. M.","year":"2007","journal-title":"Nat. Biotechnol."},{"issue":"5","key":"ref17\/cit17","doi-asserted-by":"crossref","first-page":"949","DOI":"10.1110\/ps.052030506","volume":"15","author":"Clark L. A.","year":"2006","journal-title":"Protein Sci."},{"issue":"23","key":"ref18\/cit18","doi-asserted-by":"crossref","first-page":"6789","DOI":"10.1021\/jm0608356","volume":"49","author":"Huang N.","year":"2006","journal-title":"J. Med. Chem."},{"issue":"8","key":"ref19\/cit19","doi-asserted-by":"crossref","first-page":"1442","DOI":"10.1021\/ci100221g","volume":"50","author":"Cross S.","year":"2010","journal-title":"J. Chem. Inf. Model."},{"issue":"12","key":"ref20\/cit20","doi-asserted-by":"crossref","first-page":"2813","DOI":"10.1021\/ci9003078","volume":"49","author":"Paulsen J. L.","year":"2009","journal-title":"J. Chem. Inf. Model."},{"issue":"6","key":"ref21\/cit21","doi-asserted-by":"crossref","first-page":"1342","DOI":"10.1016\/j.molimm.2006.05.006","volume":"44","author":"David M. P.","year":"2007","journal-title":"Mol. Immunol."},{"issue":"4","key":"ref22\/cit22","doi-asserted-by":"crossref","first-page":"121","DOI":"10.6026\/97320630001121","volume":"1","author":"Li L.","year":"2006","journal-title":"Bioinformation"},{"issue":"10","key":"ref23\/cit23","doi-asserted-by":"crossref","first-page":"2329","DOI":"10.1002\/prot.22745","volume":"78","author":"Diller D. J.","year":"2010","journal-title":"Proteins"},{"key":"ref24\/cit24","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1146\/annurev.immunol.26.021607.090236","volume":"26","author":"Peled J. U.","year":"2008","journal-title":"Annu. Rev. Immunol."},{"issue":"4","key":"ref25\/cit25","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/j.it.2009.01.007","volume":"30","author":"Liu M.","year":"2009","journal-title":"Trends Immunol."},{"issue":"5921","key":"ref26\/cit26","doi-asserted-by":"crossref","first-page":"1610","DOI":"10.1126\/science.1165480","volume":"323","author":"Bostrom J.","year":"2009","journal-title":"Science"},{"issue":"1","key":"ref27\/cit27","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1002\/jcc.1153","volume":"23","author":"Huo S.","year":"2002","journal-title":"J. Comput. Chem."},{"issue":"2","key":"ref28\/cit28","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1002\/jmr.1005","volume":"23","author":"Zoete V.","year":"2010","journal-title":"J. Mol. Recognit."},{"issue":"14","key":"ref29\/cit29","doi-asserted-by":"crossref","first-page":"11090","DOI":"10.1074\/jbc.M111.319764","volume":"287","author":"Chaparro-Riggers J.","year":"2012","journal-title":"J. Biol. Chem."},{"issue":"3","key":"ref30\/cit30","doi-asserted-by":"crossref","first-page":"1089","DOI":"10.1073\/pnas.91.3.1089","volume":"91","author":"Bhat T. N.","year":"1994","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"issue":"4","key":"ref31\/cit31","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1016\/0022-2836(94)90046-9","volume":"243","author":"Braden B. C.","year":"1994","journal-title":"J. Mol. Biol."},{"issue":"21","key":"ref32\/cit32","doi-asserted-by":"crossref","first-page":"6296","DOI":"10.1021\/bi000054l","volume":"39","author":"Li Y.","year":"2000","journal-title":"Biochemistry"},{"issue":"4","key":"ref33\/cit33","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1016\/j.ccr.2005.03.003","volume":"7","author":"Li S.","year":"2005","journal-title":"Cancer Cell"},{"issue":"5","key":"ref34\/cit34","doi-asserted-by":"crossref","first-page":"1031","DOI":"10.1016\/S0022-2836(03)00203-1","volume":"327","author":"Karpusas M.","year":"2003","journal-title":"J. Mol. Biol."},{"issue":"30","key":"ref35\/cit35","doi-asserted-by":"crossref","first-page":"8878","DOI":"10.1021\/bi00196a004","volume":"33","author":"Buckle A. M.","year":"1994","journal-title":"Biochemistry"},{"key":"ref36\/cit36","unstructured":"Chemical Computing GroupMOE (Molecular Operating Environment), v2009.10;Montreal, Canada, 2009."},{"issue":"1","key":"ref37\/cit37","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1002\/prot.22234","volume":"75","author":"Labute P.","year":"2009","journal-title":"Proteins"},{"issue":"1","key":"ref38\/cit38","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/S1359-0278(97)00006-0","volume":"2","author":"De Maeyer M.","year":"1997","journal-title":"Folding Des."},{"issue":"10","key":"ref39\/cit39","doi-asserted-by":"crossref","first-page":"1545","DOI":"10.1002\/jcc.21287","volume":"30","author":"Brooks B. R.","year":"2009","journal-title":"J. Comput. Chem."},{"issue":"4","key":"ref40\/cit40","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1002\/1097-0282(2000)56:4<257::AID-BIP10029>3.0.CO;2-W","volume":"56","author":"MacKerell A. D.","year":"2000","journal-title":"Biopolymers"},{"issue":"16","key":"ref41\/cit41","doi-asserted-by":"crossref","first-page":"1668","DOI":"10.1002\/jcc.20290","volume":"26","author":"Case D. A.","year":"2005","journal-title":"J. Comput. Chem."},{"issue":"13","key":"ref42\/cit42","doi-asserted-by":"crossref","first-page":"1244","DOI":"10.1002\/jcc.10120","volume":"23","author":"Luo R.","year":"2002","journal-title":"J. Comput. Chem."},{"issue":"42","key":"ref43\/cit43","doi-asserted-by":"crossref","first-page":"12263","DOI":"10.1021\/jp073399n","volume":"111","author":"Tan C.","year":"2007","journal-title":"J. Phys. Chem. B"},{"issue":"9","key":"ref44\/cit44","doi-asserted-by":"crossref","first-page":"1682","DOI":"10.1021\/ci100036a","volume":"50","author":"Li Y.","year":"2010","journal-title":"J. Chem. Inf. Model."},{"issue":"1","key":"ref45\/cit45","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1016\/j.jmb.2004.12.019","volume":"347","author":"Pokala N.","year":"2005","journal-title":"J. Mol. Biol."},{"issue":"9","key":"ref46\/cit46","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1093\/protein\/gzp030","volume":"22","author":"Potapov V.","year":"2009","journal-title":"Protein Eng., Des. Sel."}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/ci3001474","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,24]],"date-time":"2023-04-24T06:46:35Z","timestamp":1682318795000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/ci3001474"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,7,24]]},"references-count":46,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2012,8,27]]}},"alternative-id":["10.1021\/ci3001474"],"URL":"https:\/\/doi.org\/10.1021\/ci3001474","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,7,24]]}}}