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A."},{"key":"ref27\/cit27","doi-asserted-by":"crossref","first-page":"i97","DOI":"10.1093\/bioinformatics\/bts223","volume":"28","author":"Konagurthu A. S.","year":"2012","journal-title":"Bioinformatics"},{"key":"ref28\/cit28","doi-asserted-by":"crossref","first-page":"1869","DOI":"10.1002\/pro.198","volume":"18","author":"Tyagi M.","year":"2009","journal-title":"Protein Sci."},{"key":"ref29\/cit29","first-page":"341","volume":"44","author":"Andersen C. A. F.","year":"2003","journal-title":"Methods Biochem. Anal."},{"key":"ref30\/cit30","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1186\/1471-2105-6-202","volume":"6","author":"Majumdar I.","year":"2005","journal-title":"BMC Bioinf."},{"key":"ref31\/cit31","doi-asserted-by":"crossref","first-page":"232","DOI":"10.1016\/j.jmb.2010.09.034","volume":"404","author":"Cooley R. B.","year":"2010","journal-title":"J. Mol. 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