{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,20]],"date-time":"2026-05-20T11:12:46Z","timestamp":1779275566373,"version":"3.51.4"},"reference-count":34,"publisher":"American Chemical Society (ACS)","issue":"8","funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002855","name":"Ministry of Science and Technology of the People's Republic of China","doi-asserted-by":"publisher","award":["2014CB54160"],"award-info":[{"award-number":["2014CB54160"]}],"id":[{"id":"10.13039\/501100002855","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005230","name":"Natural Science Foundation of Chongqing","doi-asserted-by":"crossref","award":["2013jcyjA10063"],"award-info":[{"award-number":["2013jcyjA10063"]}],"id":[{"id":"10.13039\/501100005230","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Fundamental Research Funds for the Central Universities China","award":["CQDXWL-2012-121"],"award-info":[{"award-number":["CQDXWL-2012-121"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Inf. Model."],"published-print":{"date-parts":[[2014,8,25]]},"DOI":"10.1021\/ci500393h","type":"journal-article","created":{"date-parts":[[2014,7,22]],"date-time":"2014-07-22T12:37:33Z","timestamp":1406032653000},"page":"2233-2242","source":"Crossref","is-referenced-by-count":35,"title":["Subangstrom Accuracy in pHLA-I Modeling by Rosetta FlexPepDock Refinement Protocol"],"prefix":"10.1021","volume":"54","author":[{"given":"Tengfei","family":"Liu","sequence":"first","affiliation":[{"name":"Key\rLaboratory of Biorheological Science and Technology (Ministry of Education), Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xianchao","family":"Pan","sequence":"additional","affiliation":[{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Li","family":"Chao","sequence":"additional","affiliation":[{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wen","family":"Tan","sequence":"additional","affiliation":[{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sujun","family":"Qu","sequence":"additional","affiliation":[{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Li","family":"Yang","sequence":"additional","affiliation":[{"name":"Key\rLaboratory of Biorheological Science and Technology (Ministry of Education), Chongqing University, Chongqing 400044, China"},{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bochu","family":"Wang","sequence":"additional","affiliation":[{"name":"Key\rLaboratory of Biorheological Science and Technology (Ministry of Education), Chongqing University, Chongqing 400044, China"},{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hu","family":"Mei","sequence":"additional","affiliation":[{"name":"Key\rLaboratory of Biorheological Science and Technology (Ministry of Education), Chongqing University, Chongqing 400044, China"},{"name":"College\rof Bioengineering, Chongqing University, Chongqing 400044, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"316","published-online":{"date-parts":[[2014,7,29]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1126\/science.1083653","volume":"300","author":"Pawson T.","year":"2003","journal-title":"Science"},{"key":"ref2\/cit2","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1016\/j.copbio.2008.06.004","volume":"19","author":"Petsalaki E.","year":"2008","journal-title":"Curr. Opin. Biotechnol."},{"key":"ref3\/cit3","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1038\/nature11147","volume":"486","author":"Illing P. T.","year":"2012","journal-title":"Nature"},{"key":"ref4\/cit4","doi-asserted-by":"crossref","first-page":"9959","DOI":"10.1073\/pnas.1207934109","volume":"109","author":"Ostrov D. A.","year":"2012","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"ref5\/cit5","doi-asserted-by":"crossref","first-page":"47844","DOI":"10.1074\/jbc.M206392200","volume":"277","author":"Hulsmeyer M.","year":"2002","journal-title":"J. Biol. Chem."},{"key":"ref6\/cit6","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1016\/j.jmb.2008.01.098","volume":"377","author":"Hoare H. L.","year":"2008","journal-title":"J. Mol. Biol."},{"key":"ref7\/cit7","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1016\/j.immuni.2009.09.025","volume":"31","author":"Macdonald W. A.","year":"2009","journal-title":"Immunity"},{"key":"ref8\/cit8","doi-asserted-by":"crossref","first-page":"188","DOI":"10.1016\/j.str.2009.11.012","volume":"18","author":"London N.","year":"2010","journal-title":"Structure"},{"key":"ref9\/cit9","doi-asserted-by":"crossref","first-page":"D545","DOI":"10.1093\/nar\/gkp893","volume":"38","author":"Vanhee P.","year":"2010","journal-title":"Nucleic Acids. Res."},{"key":"ref10\/cit10","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1111\/j.1399-0039.2008.01183.x","volume":"73","author":"Holdsworth R.","year":"2009","journal-title":"Tissue Antigens"},{"key":"ref11\/cit11","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.4155\/fmc.12.99","volume":"4","author":"Audie J.","year":"2012","journal-title":"Future Med. Chem."},{"key":"ref12\/cit12","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1002\/prot.10389","volume":"52","author":"Chen R.","year":"2003","journal-title":"Proteins"},{"key":"ref13\/cit13","doi-asserted-by":"crossref","first-page":"e1000138","DOI":"10.1371\/journal.pcbi.1000138","volume":"4","author":"Hao J.","year":"2008","journal-title":"PLoS Comput. Biol."},{"key":"ref14\/cit14","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1080\/07391102.2010.10507360","volume":"28","author":"Banappagari S.","year":"2010","journal-title":"J. Biomol. Struct. Dyn."},{"key":"ref15\/cit15","doi-asserted-by":"crossref","first-page":"968","DOI":"10.1002\/jmv.23924","volume":"86","author":"Gokhale P. S.","year":"2014","journal-title":"J. Med. Virol."},{"key":"ref16\/cit16","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1002\/prot.20831","volume":"63","author":"Bordner A. J.","year":"2006","journal-title":"Proteins"},{"key":"ref17\/cit17","doi-asserted-by":"crossref","first-page":"14072","DOI":"10.1021\/ja054195s","volume":"127","author":"Niv M. Y.","year":"2005","journal-title":"J. Am. Chem. Soc."},{"key":"ref18\/cit18","doi-asserted-by":"crossref","first-page":"2836","DOI":"10.1093\/bioinformatics\/btr498","volume":"27","author":"Donsky E.","year":"2011","journal-title":"Bioinformatics"},{"key":"ref19\/cit19","doi-asserted-by":"crossref","first-page":"1084","DOI":"10.1002\/prot.22629","volume":"78","author":"Antes I.","year":"2010","journal-title":"Proteins"},{"key":"ref20\/cit20","doi-asserted-by":"crossref","first-page":"1837","DOI":"10.1016\/j.str.2011.09.014","volume":"19","author":"Dagliyan O.","year":"2011","journal-title":"Structure"},{"key":"ref21\/cit21","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1186\/1471-2105-11-90","volume":"11","author":"Roomp K.","year":"2010","journal-title":"BMC Bioinf."},{"key":"ref22\/cit22","doi-asserted-by":"crossref","first-page":"6981","DOI":"10.1073\/pnas.1018165108","volume":"108","author":"Yanover C.","year":"2011","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"ref23\/cit23","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1186\/1472-6807-12-20","volume":"12","author":"Patronov A.","year":"2012","journal-title":"BMC Struct. Biol."},{"key":"ref24\/cit24","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1002\/pro.2181","volume":"22","author":"Pierce B. G.","year":"2013","journal-title":"Protein Sci."},{"key":"ref25\/cit25","doi-asserted-by":"crossref","first-page":"2029","DOI":"10.1002\/prot.22716","volume":"78","author":"Raveh B.","year":"2010","journal-title":"Proteins"},{"key":"ref26\/cit26","doi-asserted-by":"crossref","first-page":"e18934","DOI":"10.1371\/journal.pone.0018934","volume":"6","author":"Raveh B.","year":"2011","journal-title":"PLoS One"},{"key":"ref27\/cit27","doi-asserted-by":"crossref","first-page":"W249","DOI":"10.1093\/nar\/gkr431","volume":"39","author":"London N.","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"ref28\/cit28","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","volume":"28","author":"Berman H. M.","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"ref29\/cit29","unstructured":"Sybyl 8.1, Tripos Inc.: St. Louis, MO, USA, 2008. Available online:http:\/\/www.tripos.com(accessed January 26, 2011)."},{"key":"ref30\/cit30","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/0263-7855(96)00018-5","volume":"14","author":"Humphrey W.","year":"1996","journal-title":"J. Mol. Graphics"},{"key":"ref31\/cit31","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1002\/prot.10381","volume":"52","author":"Janin J.","year":"2003","journal-title":"Proteins"},{"key":"ref32\/cit32","doi-asserted-by":"crossref","first-page":"704","DOI":"10.1002\/prot.21804","volume":"69","author":"Lensink M. F.","year":"2007","journal-title":"Proteins"},{"key":"ref33\/cit33","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1016\/S0076-6879(04)83004-0","volume":"383","author":"Rohl C. A.","year":"2004","journal-title":"Methods Enzymol."},{"key":"ref34\/cit34","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1016\/S0022-2836(03)00670-3","volume":"331","author":"Gray J. J.","year":"2003","journal-title":"J. Mol. Biol."}],"container-title":["Journal of Chemical Information and Modeling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/ci500393h","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,22]],"date-time":"2023-04-22T08:32:32Z","timestamp":1682152352000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/ci500393h"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,7,29]]},"references-count":34,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2014,8,25]]}},"alternative-id":["10.1021\/ci500393h"],"URL":"https:\/\/doi.org\/10.1021\/ci500393h","relation":{},"ISSN":["1549-9596","1549-960X"],"issn-type":[{"value":"1549-9596","type":"print"},{"value":"1549-960X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,7,29]]}}}