{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T14:00:36Z","timestamp":1790776836527,"version":"4.1.0"},"reference-count":48,"publisher":"American Chemical Society (ACS)","issue":"38","license":[{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-045"}],"funder":[{"DOI":"10.13039\/501100004761","name":"Natural Science Foundation of Hainan Province","doi-asserted-by":"publisher","award":["NO. 323QN297"],"award-info":[{"award-number":["NO. 323QN297"]}],"id":[{"id":"10.13039\/501100004761","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Open Funds of National Key Laboratory for Tropical Crop Breeding","award":["No. NKLTCB202408"],"award-info":[{"award-number":["No. NKLTCB202408"]}]},{"name":"Project of State Key Laboratory of Tropical Crop Breeding","award":["No. SKLTCBQN202509"],"award-info":[{"award-number":["No. SKLTCBQN202509"]}]},{"name":"Project of Hainan Provincial Key Research and Development Program","award":["No. ZDYF2025XDNY100"],"award-info":[{"award-number":["No. ZDYF2025XDNY100"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,9,30]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Histone deacetylases (HDACs) are critical epigenetic modulators of fruit ripening. In plants, the RPD3\/HDA1 subfamily is the most evolutionarily dynamic and functionally diverse group within the HDAC superfamily. To decipher how the RPD3\/HDA1 subfamily coordinates fruit ripening, we conducted a pangenomic investigation of these members across 18 Musaceae genomes. A total of 199 RPD3\/HDA1-type members were identified, with 20 representatives unveiling a distinct subcellular landscape. Evolutionary analyses revealed a dichotomy within the subfamily: Class-I expanded via multiple duplications, while Class-II remained constrained, shaped primarily by dispersed and whole-genome duplications. Transcriptional and functional screening identified MaHDAC3 as a ripening inhibitor, and its silencing triggered premature degreening and accelerated sugar\/ROS accumulation. MaHDAC3 deficiency elevated global histone acetylation, derepressing rate-limiting genes and boosting glycolytic flux. Collectively, our study highlights the evolutionary plasticity of Musaceae RPD3\/HDA1 HDACs and defines MaHDAC3 as an epigenetic brake on carbon metabolism, offering a promising target for extending fruit shelf life.<\/jats:p>","DOI":"10.1021\/acs.jafc.6c06018","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T15:02:22Z","timestamp":1790002942000},"page":"30430-30444","source":"Crossref","is-referenced-by-count":0,"title":["A Pangenome Analysis\nof the RPD3\/HDA1-Type Histone\nDeacetylase (HDAC) Family in Musaceae Unveils MaHDAC3 as an Epigenetic\nRepressor of Fruit Ripening"],"prefix":"10.1021","volume":"74","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4243-3694","authenticated-orcid":true,"given":"Zhiwei","family":"Lu","sequence":"first","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-9694-6527","authenticated-orcid":true,"given":"Shiyu","family":"Lu","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Agricultural Sciences , ,","place":["Beijing, China, 100081"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-4751-0897","authenticated-orcid":true,"given":"Xiaowan","family":"Hou","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiang","family":"Chen","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Weijun","family":"Xiao","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Agricultural Sciences , ,","place":["Beijing, China, 100081"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhiwei","family":"Jia","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yajie","family":"Duan","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yulin","family":"Hu","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhencai","family":"Pang","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6553-2660","authenticated-orcid":true,"given":"Dequan","family":"Sun","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jianghui","family":"Xie","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huigang","family":"Hu","sequence":"additional","affiliation":[{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Chinese Academy of Tropical Agricultural Sciences , , ,","place":["Zhanjiang, China, 524091"]},{"name":"Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products , ,","place":["Zhanjiang, China, 524091"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2026,9,21]]},"reference":[{"key":"2026093009074163700_cit1","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1016\/j.tifs.2023.03.003","article-title":"Postharvest Quality, Technologies, and Strategies to\nReduce Losses along the Supply Chain of Banana: A Review","volume":"134","author":"Al-Dairi","year":"2023","journal-title":"Trends Food Sci. 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Technol."},{"key":"2026093009074163700_cit12","doi-asserted-by":"publisher","DOI":"10.1093\/hr\/uhaf172","article-title":"The MaASR3-MaHDT1 Module Modulates\nHigh Temperature-Inhibited Chlorophyll Breakdown in Banana Fruit by\nSuppressing the E3 Ligase MaNIP1","volume":"12","author":"Luo","year":"2025","journal-title":"Hortic. 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Plant Biol."},{"issue":"1","key":"2026093009074163700_cit22","doi-asserted-by":"publisher","first-page":"7930","DOI":"10.1038\/s41598-017-08512-x","article-title":"The Tomato Histone\nDeacetylase SlHDA1 Contributes to the Repression\nof Fruit Ripening and Carotenoid Accumulation","volume":"7","author":"Guo","year":"2017","journal-title":"Sci. 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Plant."},{"issue":"6","key":"2026093009074163700_cit28","doi-asserted-by":"publisher","DOI":"10.1111\/tpj.70267","article-title":"Cytokinin-mediated Repression of\nAnthocyanin Biosynthesis in Banana Fruits","volume":"122","author":"Rajput","year":"2025","journal-title":"Plant\nJ."},{"issue":"3","key":"2026093009074163700_cit29","doi-asserted-by":"publisher","first-page":"1108","DOI":"10.1111\/nph.18382","article-title":"Interplay between R2R3MYB-type\nActivators and Repressors Regulates Proanthocyanidin Biosynthesis\nin Banana (Musa acuminata)","volume":"236","author":"Rajput","year":"2022","journal-title":"New Phytol."},{"issue":"14","key":"2026093009074163700_cit30","doi-asserted-by":"publisher","first-page":"5171","DOI":"10.1093\/jxb\/ers178","article-title":"Molecular Characterization of Banana\nNAC Transcription Factors and Their Interactions with Ethylene Signalling\nComponent EIL during Fruit Ripening","volume":"63","author":"Shan","year":"2012","journal-title":"J. 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Biotechnol."},{"issue":"6","key":"2026093009074163700_cit36","doi-asserted-by":"publisher","first-page":"1044","DOI":"10.1038\/s41588-019-0410-2","article-title":"The Tomato Pan-Genome Uncovers New Genes and a Rare Allele Regulating\nFruit Flavor","volume":"51","author":"Gao","year":"2019","journal-title":"Nat. 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Biophys. Res. Commun."},{"issue":"7410","key":"2026093009074163700_cit40","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1038\/nature11241","article-title":"The Banana (Musa acuminata) Genome and the Evolution of Monocotyledonous Plants","volume":"488","author":"D\u2019Hont","year":"2012","journal-title":"Nature"},{"issue":"5","key":"2026093009074163700_cit41","doi-asserted-by":"publisher","first-page":"852","DOI":"10.1038\/s41588-023-01340-y","article-title":"Super-Pangenome Analyses Highlight Genomic Diversity\nand Structural Variation Across Wild and Cultivated Tomato Species","volume":"55","author":"Li","year":"2023","journal-title":"Nat. Genet."},{"key":"2026093009074163700_cit42","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1146\/annurev-arplant-042916-040906","article-title":"The Epigenome\nand Transcriptional Dynamics of Fruit Ripening","volume":"68","author":"Giovannoni","year":"2017","journal-title":"Annu. Rev. Plant Biol."},{"key":"2026093009074163700_cit43","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.plantsci.2017.09.013","article-title":"Silencing\nof Histone Deacetylase SlHDT3 Delays Fruit Ripening and\nSuppresses Carotenoid Accumulation in Tomato","volume":"265","author":"Guo","year":"2017","journal-title":"Plant Sci."},{"issue":"1","key":"2026093009074163700_cit44","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1111\/j.1432-1033.1991.tb15907.x","article-title":"Glycolysis at the Climacteric of\nBananas","volume":"197","author":"Ball","year":"1991","journal-title":"Eur. J. 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