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Here, we performed a genome-wide identification of the MATE family in sweet cherry and characterized two key anthocyanin-related transporters. A total of 54 PavMATE genes were identified and classified into five subgroups with distinct structures and expression patterns. Expression levels of PavMATE50 and PavMATE51 gradually increased with fruit ripening and color deepening. Subcellular localization revealed that PavMATE50 targeted the Golgi apparatus and PavMATE51 targeted the endoplasmic reticulum. Ectopic overexpression in tobacco significantly enhanced the anthocyanin accumulation and petal pigmentation. Dual-luciferase, protein-DNA complex prediction, and EMSA assays confirmed that PavMYB10.1 directly activates the transcription of both genes. This study reveals a novel regulatory module for anthocyanin transport and provides valuable gene resources for the quality breeding of sweet cherry.<\/jats:p>","DOI":"10.1021\/acs.jafc.6c07607","type":"journal-article","created":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T19:01:35Z","timestamp":1789412495000},"page":"29153-29168","source":"Crossref","is-referenced-by-count":0,"title":["Genome-Wide Identification\nof the\n                    <i>MATE<\/i>\n                    Gene Family in Sweet Cherry and Functional\nCharacterization of\n                    <i>PavMATE50\/51<\/i>\n                    Involved in Anthocyanin\nAccumulation Regulated\nby PavMYB10.1"],"prefix":"10.1021","volume":"74","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3429-5807","authenticated-orcid":true,"given":"Chen","family":"Feng","sequence":"first","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yaxin","family":"Chen","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"China Agricultural University , , ,","place":["Beijing, China, 100193"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jixia","family":"Luo","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Beijing University of Agriculture , , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chuanbao","family":"Wu","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Wang","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"Wang","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoming","family":"Zhang","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xuwei","family":"Duan","sequence":"additional","affiliation":[{"name":"Beijing Academy of Agriculture and Forestry Sciences , , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs , ,","place":["Beijing, China, 100093"]},{"name":"Beijing Engineering Research Center for Deciduous Fruit Trees , ,","place":["Beijing, China, 100093"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2026,9,14]]},"reference":[{"key":"2026092310075695300_cit1","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1146\/annurev-food-041715-033346","article-title":"Unraveling Anthocyanin\nBioavailability for Human Health","volume":"7","author":"Lila","year":"2016","journal-title":"Annu. Rev.\nFood Sci. Technol."},{"key":"2026092310075695300_cit2","doi-asserted-by":"publisher","first-page":"124898","DOI":"10.1016\/j.foodchem.2019.05.172","article-title":"Computational\naspects of anthocyanidins\nand anthocyanins: A review","volume":"297","author":"Sinopoli","year":"2019","journal-title":"Food Chem."},{"key":"2026092310075695300_cit3","doi-asserted-by":"publisher","first-page":"101883","DOI":"10.1016\/j.fochx.2024.101883","article-title":"Factors affecting the\nstability of\nanthocyanins and strategies for improving their stability: A review","volume":"24","author":"Xue","year":"2024","journal-title":"Food Chem. X"},{"key":"2026092310075695300_cit4","doi-asserted-by":"publisher","first-page":"111661","DOI":"10.1016\/j.postharvbio.2021.111661","article-title":"Anthocyanins\ncontribute to fruit defense against postharvest green\nmold","volume":"181","author":"Lin","year":"2021","journal-title":"Postharvest Biol. Technol."},{"key":"2026092310075695300_cit5","doi-asserted-by":"publisher","first-page":"2856","DOI":"10.1111\/pce.70435","article-title":"High Light\nPromotes Anthocyanin Biosynthesis via MsCOP1-MsMYB17-MsDFR\/MsANS Module\nin Alfalfa","volume":"49","author":"Feng","year":"2026","journal-title":"Plant, Cell Environ."},{"key":"2026092310075695300_cit6","doi-asserted-by":"publisher","first-page":"5491","DOI":"10.1021\/acs.jafc.3c07741","article-title":"The Role of\nAnthocyanins in Alleviating Intestinal Diseases: A Mini Review","volume":"72","author":"Liu","year":"2024","journal-title":"J. Agric. Food Chem."},{"key":"2026092310075695300_cit7","doi-asserted-by":"publisher","first-page":"414","DOI":"10.1111\/j.1365-313X.2006.02964.x","article-title":"Red colouration in apple fruit is\ndue to the activity of the MYB transcription factor, MdMYB10","volume":"49","author":"Espley","year":"2007","journal-title":"Plant J."},{"key":"2026092310075695300_cit8","doi-asserted-by":"publisher","first-page":"901","DOI":"10.1007\/s00344-013-9355-3","article-title":"Expression Analysis\nof Anthocyanin\nBiosynthetic Genes in Different Colored Sweet Cherries (Prunus avium\nL.) During Fruit Development","volume":"32","author":"Liu","year":"2013","journal-title":"J. Plant Growth\nRegul."},{"key":"2026092310075695300_cit9","doi-asserted-by":"publisher","first-page":"663","DOI":"10.1016\/j.plaphy.2018.08.016","article-title":"Transcriptomic\nanalysis of light-dependent anthocyanin accumulation in bicolored\ncherry fruits","volume":"130","author":"Guo","year":"2018","journal-title":"Plant Physiol. Bioch."},{"key":"2026092310075695300_cit10","doi-asserted-by":"publisher","first-page":"100103","DOI":"10.1016\/j.agrcom.2025.100103","article-title":"Effect\nof bagging treatment on fruit anthocyanin biosynthesis in sweet cherry","volume":"3","author":"Feng","year":"2025","journal-title":"Agric. Commun."},{"key":"2026092310075695300_cit11","doi-asserted-by":"publisher","first-page":"112316","DOI":"10.1016\/j.scienta.2023.112316","article-title":"Effects of water-saving\nridging and film-covering cultivation methods on fruit anthocyanin\nbiosynthesis in apple fruit","volume":"321","author":"Feng","year":"2023","journal-title":"Sci. Hortic."},{"key":"2026092310075695300_cit12","doi-asserted-by":"publisher","first-page":"868","DOI":"10.1111\/ppl.13378","article-title":"Spotlight on the overlapping routes\nand partners for anthocyanin\ntransport in plants","volume":"171","author":"Kaur","year":"2021","journal-title":"Physiol. 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Rep."},{"key":"2026092310075695300_cit16","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1186\/s12870-026-08395-z","article-title":"AaMYB114 promotes the\ncoloration of Actinidia arguta by synthesizing and transporting anthocyanins","volume":"26","author":"Ye","year":"2026","journal-title":"BMC Plant Biol."},{"key":"2026092310075695300_cit17","doi-asserted-by":"publisher","first-page":"4643","DOI":"10.1093\/jxb\/erz246","article-title":"The multitasking abilities\nof MATE transporters in plants","volume":"70","author":"Upadhyay","year":"2019","journal-title":"J. Exp. Bot."},{"key":"2026092310075695300_cit18","doi-asserted-by":"publisher","first-page":"878","DOI":"10.3390\/agronomy12040878","article-title":"The Roles of Multidrug\nand Toxic Compound Extrusion (MATE) Transporters in Regulating Agronomic\nTraits","volume":"12","author":"Ku","year":"2022","journal-title":"Agronomy"},{"key":"2026092310075695300_cit19","doi-asserted-by":"publisher","first-page":"774885","DOI":"10.3389\/fpls.2022.774885","article-title":"A Systematic\nPhylogenomic Classification of the Multidrug and Toxic Compound Extrusion\nTransporter Gene Family in Plants","volume":"13","author":"Nimmy","year":"2022","journal-title":"Front. Plant\nSci."},{"key":"2026092310075695300_cit20","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/s12870-016-0895-0","article-title":"The similar\nand different evolutionary trends of MATE family occurred between\nrice and Arabidopsis thaliana","volume":"16","author":"Wang","year":"2016","journal-title":"BMC Plant Biol."},{"key":"2026092310075695300_cit21","doi-asserted-by":"publisher","first-page":"853","DOI":"10.1105\/tpc.13.4.853","article-title":"The TRANSPARENT\nTESTA12 Gene of Arabidopsis Encodes a Multidrug Secondary Transporter-like\nProtein Required for Flavonoid Sequestration in Vacuoles of the Seed\nCoat. Endothelium","volume":"13","author":"Debeaujon","year":"2001","journal-title":"Plant Cell"},{"key":"2026092310075695300_cit22","doi-asserted-by":"publisher","first-page":"2323","DOI":"10.1105\/tpc.109.067819","article-title":"MATE Transporters Facilitate Vacuolar Uptake of Epicatechin\n3\u2032-O-Glucoside for Proanthocyanidin Biosynthesis in Medicago\ntruncatula and Arabidopsis","volume":"21","author":"Zhao","year":"2009","journal-title":"Plant Cell"},{"key":"2026092310075695300_cit23","doi-asserted-by":"publisher","first-page":"113254","DOI":"10.1016\/j.scienta.2024.113254","article-title":"Genome-wide\ncharacterization of MATE\nfamily members in common bean (Phaseolus vulgaris Linn.) and their\nexpression profiles in response to abiotic stress","volume":"333","author":"Zhao","year":"2024","journal-title":"Sci. Hortic."},{"key":"2026092310075695300_cit24","doi-asserted-by":"publisher","first-page":"1079","DOI":"10.1016\/j.hpj.2023.01.006","article-title":"Genome-wide identification\nof the\nMATE gene family and functional characterization of PbrMATE9 related\nto anthocyanin in pear","volume":"9","author":"Sheng","year":"2023","journal-title":"Hortic. Plant J."},{"key":"2026092310075695300_cit25","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1104\/pp.109.135624","article-title":"Grapevine MATE-Type Proteins Act as Vacuolar H+-Dependent\nAcylated\nAnthocyanin Transporters Plant Physiol","volume":"150","author":"Gomez","year":"2009"},{"key":"2026092310075695300_cit26","doi-asserted-by":"publisher","first-page":"113676","DOI":"10.1016\/j.phytochem.2023.113676","article-title":"Genome-wide identification\nof MATE,\nfunctional analysis and molecular dynamics of DcMATE21 involved in\nanthocyanin accumulation in Daucus carota","volume":"210","author":"Saad","year":"2023","journal-title":"Phytochemistry"},{"key":"2026092310075695300_cit27","doi-asserted-by":"publisher","first-page":"418","DOI":"10.3390\/genes11040418","article-title":"Cloning and\nFunctional Characterization of a Flavonoid\nTransport-Related MATE Gene in Asiatic Hybrid Lilies (Lilium spp.)","volume":"11","author":"Xu","year":"2020","journal-title":"Genes"},{"key":"2026092310075695300_cit28","doi-asserted-by":"publisher","first-page":"1703357","DOI":"10.3389\/fpls.2025.1703357","article-title":"PdMATE16 and\nPdMATE35 are essential for the accumulation of multiple flavonoids\nin tree peonies","volume":"16","author":"Yuan","year":"2025","journal-title":"Front. Plant Sci."},{"key":"2026092310075695300_cit29","doi-asserted-by":"publisher","first-page":"1147","DOI":"10.1007\/s00299-014-1604-9","article-title":"VvMATE1 and\nVvMATE2 encode putative proanthocyanidin transporters expressed during\nberry development in Vitis vinifera L","volume":"33","author":"Pe\u0301rez-Di\u0301az","year":"2014","journal-title":"Plant\nCell Rep."},{"key":"2026092310075695300_cit30","doi-asserted-by":"publisher","first-page":"158","DOI":"10.1016\/j.scienta.2017.12.032","article-title":"FaTT12-1, a multidrug\nand toxin extrusion (MATE) member involved in proanthocyanidin transport\nin strawberry fruits","volume":"231","author":"Chen","year":"2018","journal-title":"Sci. Hortic."},{"key":"2026092310075695300_cit31","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1016\/j.plaphy.2016.07.016","article-title":"Molecular cloning and\nfunctional characterization of\nDkMATE1 involved in proanthocyanidin precursor transport in persimmon\n(Diospyros kaki Thunb.) fruit","volume":"108","author":"Yang","year":"2016","journal-title":"Plant Physiol.\nBioch"},{"key":"2026092310075695300_cit32","doi-asserted-by":"publisher","first-page":"109483","DOI":"10.1016\/j.plaphy.2025.109483","article-title":"The Multidrug and toxin\ncompound extrusion gene GhTT12 promotes the accumulation of both proanthocyanidins\nand anthocyanins in Gossypium hirsutum","volume":"220","author":"Cai","year":"2025","journal-title":"Plant\nPhysiol. Biochem."},{"key":"2026092310075695300_cit33","doi-asserted-by":"publisher","first-page":"2420","DOI":"10.1111\/tpj.17120","article-title":"Effects\nof phosphorylation on CsTT12 transport function: A comparative phosphoproteomic\nanalysis of flavonoid biosynthesis in tea plants (Camellia sinensis)","volume":"120","author":"Wang","year":"2024","journal-title":"Plant J."},{"key":"2026092310075695300_cit34","doi-asserted-by":"publisher","first-page":"102632","DOI":"10.1016\/j.fochx.2025.102632","article-title":"Characterization of\nvolatile profiles in cherry fruits: Integration of E-nose and HS-SPME-GC\u2013MS","volume":"28","author":"Feng","year":"2025","journal-title":"Food Chem. X"},{"key":"2026092310075695300_cit35","doi-asserted-by":"publisher","first-page":"109219","DOI":"10.1016\/j.jfca.2026.109219","article-title":"Flavor and mineral\nprofiles of different colored sweet cherries: A combined analysis\nusing sugar-acid ratio, electronic tongue, ICP-MS, and multivariate\nstatistics","volume":"154","author":"Feng","year":"2026","journal-title":"J. Food Compos. Anal."},{"key":"2026092310075695300_cit36","doi-asserted-by":"publisher","first-page":"2120","DOI":"10.1111\/pbi.12568","article-title":"The R2R3MYB transcription factor PavMYB10.1 involves\nin anthocyanin biosynthesis and determines fruit skin colour in sweet\ncherry (Prunus avium L.)","volume":"14","author":"Jin","year":"2016","journal-title":"Plant\nBiotechnol. J."},{"key":"2026092310075695300_cit37","doi-asserted-by":"publisher","first-page":"C633","DOI":"10.1111\/j.1750-3841.2011.02150.x","article-title":"Comparative\nStudy of Phenolic Compounds and Antioxidant Activity\nin Different Species of Cherries","volume":"76","author":"Liu","year":"2011","journal-title":"J. Food Sci."},{"key":"2026092310075695300_cit38","doi-asserted-by":"publisher","first-page":"2030","DOI":"10.1093\/plphys\/kiad137","article-title":"Two B-box proteins,\nPavBBX6\/9, positively regulate\nlight-induced anthocyanin accumulation in sweet cherry","volume":"192","author":"Wang","year":"2023","journal-title":"Plant Physiol."},{"key":"2026092310075695300_cit39","doi-asserted-by":"publisher","first-page":"kiaf616","DOI":"10.1093\/plphys\/kiaf616","article-title":"The PavDREB1E\u2013PavD8\u2013PavHY5 module integrates light\nand gibberellin signals to regulate sweet cherry anthocyanin biosynthesis","volume":"199","author":"Xiao","year":"2025","journal-title":"Plant Physiol."},{"key":"2026092310075695300_cit40","doi-asserted-by":"publisher","first-page":"595","DOI":"10.1007\/s13580-021-00413-3","article-title":"Genome-wide\nidentification and comparative analysis of MATE gene family in Cucurbitaceae\nspecies and their regulatory role in melon (Cucumis melo) under salt\nstress","volume":"63","author":"Shah","year":"2022","journal-title":"Hortic. Environ. Biotechnol."},{"key":"2026092310075695300_cit41","doi-asserted-by":"publisher","first-page":"632","DOI":"10.1186\/s12864-021-07943-1","article-title":"Genome-wide\nidentification, characterization and expression analysis of MATE family\ngenes in apple (Malus \u00d7 domestica Borkh)","volume":"22","author":"Zhang","year":"2021","journal-title":"BMC Genomics"},{"key":"2026092310075695300_cit42","doi-asserted-by":"publisher","first-page":"1163","DOI":"10.1111\/ppl.13511","article-title":"Genome-wide investigation\nand comparative analysis of MATE gene family\nin Rosaceae species and their regulatory role in abiotic stress responses\nin Chinese pear (Pyrus bretschneideri)","volume":"173","author":"Manzoor","year":"2021","journal-title":"Physiol.\nPlant."},{"key":"2026092310075695300_cit43","doi-asserted-by":"publisher","first-page":"139270","DOI":"10.1016\/j.jhazmat.2025.139270","article-title":"PpMATE49, a multidrug\nand toxic compound extrusion transporter, confers manganese toxicity\ntolerance in peach (Prunus persica)","volume":"496","author":"Zhu","year":"2025","journal-title":"J. Hazard.\nMater."},{"key":"2026092310075695300_cit44","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1038\/s41438-020-00343-8","article-title":"Chromosome-scale\ngenome assembly of sweet cherry (Prunus avium L.)\ncv. Tieton obtained using long-read and Hi-C sequencing","volume":"7","author":"Wang","year":"2020","journal-title":"Hortic. Res."},{"key":"2026092310075695300_cit45","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1016\/j.molp.2020.06.009","article-title":"TBtools: An\nIntegrative Toolkit Developed for Interactive\nAnalyses of Big Biological Data","volume":"13","author":"Chen","year":"2020","journal-title":"Mol. Plant"},{"key":"2026092310075695300_cit46","doi-asserted-by":"publisher","first-page":"143062","DOI":"10.1016\/j.ijbiomac.2025.143062","article-title":"Identification\nand characteristic analysis of PavUGT48 as a novel\nUDP-glycosyltransferase with dual functions on anthocyanin and amygdalin\nbiosynthesis in sweet cherry","volume":"309","author":"Feng","year":"2025","journal-title":"Int. J. 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