{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T12:21:06Z","timestamp":1793103666028,"version":"4.5.0"},"reference-count":57,"publisher":"American Chemical Society (ACS)","issue":"22","license":[{"start":{"date-parts":[[2024,11,6]],"date-time":"2024-11-06T00:00:00Z","timestamp":1730851200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000923","name":"Silicon Valley Community Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000923","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100014989","name":"Chan Zuckerberg Initiative","doi-asserted-by":"publisher","award":["2023-332391"],"award-info":[{"award-number":["2023-332391"]}],"id":[{"id":"10.13039\/100014989","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000078","name":"Division of Materials Research","doi-asserted-by":"publisher","award":["DMR-2011750"],"award-info":[{"award-number":["DMR-2011750"]}],"id":[{"id":"10.13039\/100000078","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Omenn-Darling Bioengineering Institute, Princeton University"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Chem. Theory Comput."],"published-print":{"date-parts":[[2024,11,26]]},"DOI":"10.1021\/acs.jctc.4c00803","type":"journal-article","created":{"date-parts":[[2024,11,6]],"date-time":"2024-11-06T19:47:40Z","timestamp":1730922460000},"page":"10209-10222","source":"Crossref","is-referenced-by-count":23,"title":["Accelerated Simulations Reveal Physicochemical Factors Governing Stability and Composition of RNA Clusters"],"prefix":"10.1021","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1727-5759","authenticated-orcid":true,"given":"Dilimulati","family":"Aierken","sequence":"first","affiliation":[{"name":"Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, United States"},{"name":"Omenn\u2212Darling Bioengineering Institute, Princeton University, Princeton, New Jersey 08544, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4525-180X","authenticated-orcid":true,"given":"Jerelle A.","family":"Joseph","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, United States"},{"name":"Omenn\u2212Darling Bioengineering Institute, Princeton University, Princeton, New Jersey 08544, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2024,11,6]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1038\/s41580-020-0264-6"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aar7366"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2018.05.003"},{"key":"ref4\/cit4","doi-asserted-by":"publisher","DOI":"10.1016\/j.molcel.2015.10.006"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-biophys-052118-115508"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1038\/nature22386"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1800038115"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1038\/s41557-023-01353-4"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1038\/s41589-021-00904-5"},{"key":"ref10\/cit10","doi-asserted-by":"publisher","DOI":"10.1016\/j.molcel.2023.08.006"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1038\/s41580-021-00382-6"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw784"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1038\/nprot.2015.103"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-020-01010-5"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.3c00198"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005941"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.0c01064"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-21181-9"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1038\/s41557-022-00934-z"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2021.11.003"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2021.01.031"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1038\/s43588-021-00155-3"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa1099"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2021.01.031"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-25132-1"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1261\/rna.078875.121"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1021\/acs.chemrev.7b00427"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005659"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1016\/j.cpc.2021.108171"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540130508"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1016\/j.crmeth.2022.100334"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-35803-x"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkad957"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1063\/1.1674820"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1088\/0965-0393\/18\/1\/015012"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1063\/5.0008312"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.0c10489"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq700"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1063\/1.2719690"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1177\/10943420231213013"},{"key":"ref41\/cit41","unstructured":"Deep learning gpu benchmarks\n                      , https:\/\/lambdalabs.com\/gpu-benchmarks (2024\u201304\u201330)."},{"key":"ref42\/cit42","unstructured":"Openmm benchmarks of simulation\nspeed on typical biochemical systems\n                      , 2024, https:\/\/openmm.org\/benchmarks."},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2202222119"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.30294"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1007028"},{"key":"ref46\/cit46","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/S0076-6879(09)69020-0","volume-title":"Biophysical, Chemical, and Functional Probes of RNA Structure, Interactions and Folding: Part B, Methods in Enzymology","volume":"469","author":"Chen A. A.","year":"2009"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2009.05.071"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz978"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1021\/jacs.2c11362"},{"key":"ref50\/cit50","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-18224-y"},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-21089-4"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1922365117"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1002\/ange.201703191"},{"key":"ref54\/cit54","doi-asserted-by":"publisher","DOI":"10.1126\/science.aar7432"},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-41274-x"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.03.050"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2301409120"}],"container-title":["Journal of Chemical Theory and Computation"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jctc.4c00803","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acs.jctc.4c00803","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,26]],"date-time":"2024-11-26T04:23:41Z","timestamp":1732595021000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jctc.4c00803"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,11,6]]},"references-count":57,"journal-issue":{"issue":"22","published-print":{"date-parts":[[2024,11,26]]}},"alternative-id":["10.1021\/acs.jctc.4c00803"],"URL":"https:\/\/doi.org\/10.1021\/acs.jctc.4c00803","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2023.12.23.573204","asserted-by":"object"}]},"ISSN":["1549-9618","1549-9626"],"issn-type":[{"value":"1549-9618","type":"print"},{"value":"1549-9626","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,11,6]]}}}