{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T19:25:30Z","timestamp":1786994730460,"version":"build-2736575974"},"reference-count":61,"publisher":"American Chemical Society (ACS)","issue":"11","license":[{"start":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T00:00:00Z","timestamp":1592352000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-001"},{"start":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T00:00:00Z","timestamp":1592352000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-009"},{"start":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T00:00:00Z","timestamp":1592352000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31872723"],"award-info":[{"award-number":["31872723"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012246","name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012246","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,11,6]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>SARS-CoV-2 has caused the largest pandemic of the twenty-first century (COVID-19), threatening the life and economy of all countries in the world. The identification of novel therapies and vaccines that can mitigate or control this global health threat is among the most important challenges facing biomedical sciences. To construct a long-term strategy to fight both SARS-CoV-2 and other possible future threats from coronaviruses, it is critical to understand the molecular mechanisms underlying the virus action. The viral entry and associated infectivity stems from the formation of the SARS-CoV-2 spike protein complex with angiotensin-converting enzyme 2 (ACE2). The detection of putative allosteric sites on the viral spike protein molecule can be used to elucidate the molecular pathways that can be targeted with allosteric drugs to weaken the spike-ACE2 interaction and, thus, reduce viral infectivity. In this study, we present the results of the application of different computational methods aimed at detecting allosteric sites on the SARS-CoV-2 spike protein. The adopted tools consisted of the protein contact networks (PCNs), SEPAS (Affinity by Flexibility), and perturbation response scanning (PRS) based on elastic network modes. All of these methods were applied to the ACE2 complex with both the SARS-CoV2 and SARS-CoV spike proteins. All of the adopted analyses converged toward a specific region (allosteric modulation region [AMR]), present in both complexes and predicted to act as an allosteric site modulating the binding of the spike protein with ACE2. Preliminary results on hepcidin (a molecule with strong structural and sequence with AMR) indicated an inhibitory effect on the binding affinity of the spike protein toward the ACE2 protein.<\/jats:p>","DOI":"10.1021\/acs.jproteome.0c00273","type":"journal-article","created":{"date-parts":[[2020,6,17]],"date-time":"2020-06-17T14:27:00Z","timestamp":1592404020000},"page":"4576-4586","source":"Crossref","is-referenced-by-count":72,"title":["The Discovery\nof a Putative Allosteric Site in the\nSARS-CoV\u20112 Spike Protein Using an Integrated Structural\/Dynamic\nApproach"],"prefix":"10.1021","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5329-8689","authenticated-orcid":true,"given":"Luisa","family":"Di Paola","sequence":"first","affiliation":[{"name":"Universita\u0300 Campus Bio-Medico di Roma , , via A\u0301lvaro del Portillo 21 , ,","place":["Rome, Italy, 00128"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hamid","family":"Hadi-Alijanvand","sequence":"additional","affiliation":[{"name":"Institute for Advanced Studies in Basic Sciences (IASBS) , , , ,","place":["Zanjan, Iran, 45137-66731"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xingyu","family":"Song","sequence":"additional","affiliation":[{"name":"Soochow University , , ,","place":["Suzhou, China, 215123"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8754-1541","authenticated-orcid":true,"given":"Guang","family":"Hu","sequence":"additional","affiliation":[{"name":"Soochow University , , ,","place":["Suzhou, China, 215123"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alessandro","family":"Giuliani","sequence":"additional","affiliation":[{"name":"Istituto Superiore di Sanita\u0300 , , ,","place":["Rome, Italy, 00161"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2020,6,17]]},"reference":[{"issue":"1","key":"2026081714254815500_cit1","doi-asserted-by":"publisher","first-page":"3","DOI":"10.30895\/2312-7821-2020-8-1-3-8","article-title":"Coronavirus\ndisease COVID-2019 (In Russ.)","volume":"8","author":"Romanov","year":"2020","journal-title":"Safety and Risk\nof Pharmacotherapy"},{"key":"2026081714254815500_cit2","doi-asserted-by":"publisher","first-page":"727","DOI":"10.1056\/NEJMoa2001017","article-title":"A Novel Coronavirus\nfrom Patients with Pneumonia in China, 2019","volume":"382","author":"Zhu","year":"2020","journal-title":"N. Engl. J. Med."},{"key":"2026081714254815500_cit3","doi-asserted-by":"publisher","first-page":"418","DOI":"10.1002\/jmv.25681","article-title":"Emerging Coronaviruses: Genome Structure, Replication,\nand Pathogenesis","volume":"92","author":"Chen","year":"2020","journal-title":"J. Med. Virol."},{"issue":"6","key":"2026081714254815500_cit4","doi-asserted-by":"publisher","first-page":"1011","DOI":"10.3390\/v4061011","article-title":"Mechanisms\nof Coronavirus Cell Entry Mediated by the Viral Spike Protein","volume":"4","author":"Belouzard","year":"2012","journal-title":"Viruses"},{"key":"2026081714254815500_cit5","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1002\/jmv.25688","article-title":"The 2019-new Coronavirus Epidemic: Evidence for Virus\nEvolution","volume":"92","author":"Benvenuto","year":"2020","journal-title":"J. Med. 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